CSPI01G25670 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G25670
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	hydrophobic protein LTI6B-like
Location	Chr1: 21087269 .. 21087677 (-)
RNA-Seq Expression	CSPI01G25670
Synteny	CSPI01G25670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACGAAGGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTCTGATAATCATCTCTTAACTTTATTTTTCATTTTCAAATCCCATTATTTCACTAACTCTCTCTTTTAATCACTTCATAATTTCAGGTTGAGTTTTGGATCTGCTTGGTCTTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGATCATCCAATTCAAAGTCCGTTTTATTCCCTCATCATCCTAATTTTGATCTTTTGTTAATTAAATACTTTTTTTACAAAAAAATTAAAATTGAATTATGTGTGTTGGTTCGATTTCACTTTTCAGGGATTGATGGAAGAAATTATTGGA

mRNA sequence

ATGGCAGACGAAGGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCTTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGATCATCCAATTCAAAGTCCGTTTTATTCCCTCATCATCCTAATTTTGATCTTTTGTTAATTAAATACTTTTTTTACAAAAAAATTAAAATTGAATTATGTGTGTTGGTTCGATTTCACTTTTCAGGGATTGATGGAAGAAATTATTGGA

Coding sequence (CDS)

ATGGCAGACGAAGGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCTTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGA

Protein sequence

MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK*

Homology

[Close]

BLAST of CSPI01G25670 vs. ExPASy Swiss-Prot
Match: A2Y075 (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 5  GTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          GT NCIDIL+AI+LPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

[Close]

BLAST of CSPI01G25670 vs. ExPASy Swiss-Prot
Match: Q0DKW8 (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 5  GTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          GT NCIDIL+AI+LPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

[Close]

BLAST of CSPI01G25670 vs. ExPASy Swiss-Prot
Match: Q8H5T6 (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.7e-19
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MAD  T  CIDI+LAI+LPPLGVF KFGC +EFWICL+LTFFGY+PGIIYAV+ ITK
Sbjct: 1  MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

[Close]

BLAST of CSPI01G25670 vs. ExPASy Swiss-Prot
Match: Q9ZNS6 (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.4e-17
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLKFGC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

[Close]

BLAST of CSPI01G25670 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.4e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

[Close]

BLAST of CSPI01G25670 vs. ExPASy TrEMBL
Match: A0A0A0M1D6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560745 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.0e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of CSPI01G25670 vs. ExPASy TrEMBL
Match: A0A1S3BNR9 (hydrophobic protein LTI6B-like OS=Cucumis melo OX=3656 GN=LOC103492093 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of CSPI01G25670 vs. ExPASy TrEMBL
Match: A0A1S2XTZ3 (hydrophobic protein LTI6B-like OS=Cicer arietinum OX=3827 GN=LOC101498830 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.4e-23
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDILLAILLPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYA+YAITK
Sbjct: 1  MADEGTANCIDILLAILLPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of CSPI01G25670 vs. ExPASy TrEMBL
Match: A0A4Y7IL50 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_017259 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.7e-22
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE T NCIDILLAI+LPPLGVFLKFGCQ+EFWICL+LTFFGYIPGIIYA+YAITK
Sbjct: 1  MADESTLNCIDILLAIILPPLGVFLKFGCQIEFWICLILTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of CSPI01G25670 vs. ExPASy TrEMBL
Match: A0A2K3L766 (Hydrophobic protein LTI6A-like OS=Trifolium pratense OX=57577 GN=L195_g030288 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-22
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDILLAI+LPPLGVFLKFGC VEFWICLVLT FGYIPGIIYAVYAITK
Sbjct: 1  MADEGTANCIDILLAIILPPLGVFLKFGCNVEFWICLVLTLFGYIPGIIYAVYAITK 57

[Close]

BLAST of CSPI01G25670 vs. NCBI nr
Match: KGN65991.1 (hypothetical protein Csa_007015 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.0e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of CSPI01G25670 vs. NCBI nr
Match: XP_038879764.1 (hydrophobic protein LTI6B-like [Benincasa hispida])

HSP 1 Score: 117.1 bits (292), Expect = 5.1e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 37 MADEATTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 93

[Close]

BLAST of CSPI01G25670 vs. NCBI nr
Match: XP_008450512.1 (PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 8.7e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of CSPI01G25670 vs. NCBI nr
Match: XP_004494506.1 (hydrophobic protein LTI6B-like [Cicer arietinum])

HSP 1 Score: 115.2 bits (287), Expect = 1.9e-22
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDILLAILLPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYA+YAITK
Sbjct: 1  MADEGTANCIDILLAILLPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of CSPI01G25670 vs. NCBI nr
Match: XP_038705733.1 (hydrophobic protein LTI6B-like [Tripterygium wilfordii])

HSP 1 Score: 113.2 bits (282), Expect = 7.4e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADEGT NCIDILLAILLPPLGVFLKFGC+VEFWICLVLT FGYIPGIIYA+YAITK
Sbjct: 1  MADEGTANCIDILLAILLPPLGVFLKFGCKVEFWICLVLTLFGYIPGIIYAIYAITK 57

[Close]

BLAST of CSPI01G25670 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-18
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLKFGC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

[Close]

BLAST of CSPI01G25670 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 87.0 bits (214), Expect = 5.3e-18
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

[Close]

BLAST of CSPI01G25670 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-15
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5  GTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAI 56
          G+   ++I+LAILLPP+GVFL++GC VEFWICL+LT  GYIPGIIYA+Y +
Sbjct: 2  GSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

[Close]

BLAST of CSPI01G25670 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-12
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 10 IDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          +++L AI +PP+GVFL++G  +EFW+CL+LT F +IPG+IYA+Y +TK
Sbjct: 5  LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

[Close]

BLAST of CSPI01G25670 vs. TAIR 10
Match: AT4G28088.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 66.2 bits (160), Expect = 9.6e-12
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 5  GTTNCIDILLAILLPPLGVFLKFG-CQVEFWICLVLTFFGYIPGIIYAVYAI 56
          G   C +I++AIL+PPLGV L+ G C  EF ICL+LT  GY+PGIIYA+YAI
Sbjct: 4  GCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAI 55

The following BLAST results are available for this feature:

BLAST of CSPI01G25670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Y075	2.5e-20	84.91	Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 S...	[more]
Q0DKW8	2.5e-20	84.91	Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2...	[more]
Q8H5T6	4.7e-19	77.19	Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2...	[more]
Q9ZNS6	4.4e-17	73.08	Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1	[more]
Q9ZNQ7	7.4e-17	75.00	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]

BLAST of CSPI01G25670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1D6	5.0e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560745 PE=3 SV=1	[more]
A0A1S3BNR9	4.2e-23	98.25	hydrophobic protein LTI6B-like OS=Cucumis melo OX=3656 GN=LOC103492093 PE=3 SV=1	[more]
A0A1S2XTZ3	9.4e-23	94.74	hydrophobic protein LTI6B-like OS=Cicer arietinum OX=3827 GN=LOC101498830 PE=3 S...	[more]
A0A4Y7IL50	4.7e-22	89.47	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_017259 PE=3 SV=1	[more]
A0A2K3L766	6.1e-22	92.98	Hydrophobic protein LTI6A-like OS=Trifolium pratense OX=57577 GN=L195_g030288 PE...	[more]

BLAST of CSPI01G25670 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65991.1	1.0e-23	100.00	hypothetical protein Csa_007015 [Cucumis sativus]	[more]
XP_038879764.1	5.1e-23	98.25	hydrophobic protein LTI6B-like [Benincasa hispida]	[more]
XP_008450512.1	8.7e-23	98.25	PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo]	[more]
XP_004494506.1	1.9e-22	94.74	hydrophobic protein LTI6B-like [Cicer arietinum]	[more]
XP_038705733.1	7.4e-22	92.98	hydrophobic protein LTI6B-like [Tripterygium wilfordii]	[more]

BLAST of CSPI01G25670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05890.1	3.1e-18	73.08	Low temperature and salt responsive protein family	[more]
AT3G05880.1	5.3e-18	75.00	Low temperature and salt responsive protein family	[more]
AT2G38905.1	1.9e-15	66.67	Low temperature and salt responsive protein family	[more]
AT1G57550.1	1.1e-12	56.25	Low temperature and salt responsive protein family	[more]
AT4G28088.1	9.6e-12	61.54	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 9..55 e-value: 3.7E-20 score: 71.9
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..57
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 13..28
None	No IPR available	PANTHER	PTHR21659:SF81	LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G25670.1	CSPI01G25670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane