CSPI01G25400 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G25400
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 20886923 .. 20887618 (+)
RNA-Seq ExpressionCSPI01G25400
SyntenyCSPI01G25400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAATCAATCGATCCTCCACCTCCTTAACATAACCGTCAAATTACAGTTGGAATTTCAAACCTTAATTTACCCAAAACCTCTCATCTCCTATCAGAATTTCAACTTTTGATGAAGCATTTCCCTCTAGTCTCATGATTCCAATAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCTGATCCCTCACCCTTCCCTTCCCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCTCCAAATGTCGTTTCTTCTCTTACCACCATTTTCCATTGCTGCCTCTTTTCTATTACAATTGTGTTGGCAACCATAAGATACTCTGCAATCCCATTCCAATATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTACGAGCAGCACCAATCGCCTTGCTCGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGCGGTCTCAGGGCTTCCGTGTTTCGACCATTTCAGAACACAAGGCAGAGTATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGAATGATCGGCTCTACATGGTTAAAGAAAGAAAAGAACTAAAAGAAGTGGGCTGGTAGAGACTGATCGAC

mRNA sequence

GTTAATCAATCGATCCTCCACCTCCTTAACATAACCGTCAAATTACAGTTGGAATTTCAAACCTTAATTTACCCAAAACCTCTCATCTCCTATCAGAATTTCAACTTTTGATGAAGCATTTCCCTCTAGTCTCATGATTCCAATAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCTGATCCCTCACCCTTCCCTTCCCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCTCCAAATGTCGTTTCTTCTCTTACCACCATTTTCCATTGCTGCCTCTTTTCTATTACAATTGTGTTGGCAACCATAAGATACTCTGCAATCCCATTCCAATATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTACGAGCAGCACCAATCGCCTTGCTCGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGCGGTCTCAGGGCTTCCGTGTTTCGACCATTTCAGAACACAAGGCAGAGTATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGAATGATCGGCTCTACATGGTTAAAGAAAGAAAAGAACTAAAAGAAGTGGGCTGGTAGAGACTGATCGAC

Coding sequence (CDS)

ATGATTCCAATAATGCAAAAAGTCTCATCTTTTACACATTTTCTTACTTCTGATCCCTCACCCTTCCCTTCCCTTCTCCTTCTCCTCCTCATCTTCACCTTCCATATCTCCAAATGTCGTTTCTTCTCTTACCACCATTTTCCATTGCTGCCTCTTTTCTATTACAATTGTGTTGGCAACCATAAGATACTCTGCAATCCCATTCCAATATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTACGAGCAGCACCAATCGCCTTGCTCGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGCGGTCTCAGGGCTTCCGTGTTTCGACCATTTCAGAACACAAGGCAGAGTATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTGGGAATGATAGTACTACTATTCAATATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA

Protein sequence

MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM*
Homology
[Close]
BLAST of CSPI01G25400 vs. ExPASy TrEMBL
Match: A0A0A0LW23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 9.0e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 5   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 64
           MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 65  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 124
           CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 120

Query: 125 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 165
           AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

[Close]
BLAST of CSPI01G25400 vs. ExPASy TrEMBL
Match: A0A5A7TJ52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00210 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.3e-81
Identity = 152/164 (92.68%), Postives = 156/164 (95.12%), Query Frame = 0 

Query: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60
           MIP+MQKV SFT+FLTSDPSPFPSLLL+LLIFTFHI KCRFFSYHHFP LPLFYYNCVGN
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120
           HKILCNPIP SSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKW SQG  VSTI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 165
           SEHKAE EEIGGCTPWVLVG+IVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

[Close]
BLAST of CSPI01G25400 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 1.2e-88
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 

Query: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60
           MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN
Sbjct: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60

Query: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120
           HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI
Sbjct: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120

Query: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 165
           SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164

[Close]
BLAST of CSPI01G25400 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 9.0e-81
Identity = 152/164 (92.68%), Postives = 156/164 (95.12%), Query Frame = 0 

Query: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60
           MIP+MQKV SFT+FLTSDPSPFPSLLL+LLIFTFHI KCRFFSYHHFP LPLFYYNCVGN
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120
           HKILCNPIP SSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKW SQG  VSTI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 165
           SEHKAE EEIGGCTPWVLVG+IVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

[Close]
BLAST of CSPI01G25400 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-54
Identity = 114/164 (69.51%), Postives = 128/164 (78.05%), Query Frame = 0 

Query: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60
           MIPIM K+SS TH LTSDPSPFPSLLLLLLIFT HI  CRFFSY      P  YY+C G 
Sbjct: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSY-FLSASPSLYYHCAGR 60

Query: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120
              LCNP+ +SSP+RLP GGW+LR APIALLVVVSWL++K++ GVAAR W S+   V TI
Sbjct: 61  SNWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTI 120

Query: 121 ---SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFV 162
               +H+ E E IGGCTPWVLVGMI+LLFNMAQRQALIRHCLFV
Sbjct: 121 LDMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163

The following BLAST results are available for this feature:
BLAST of CSPI01G25400 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G25400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW239.0e-87100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554550 PE=4 SV=1[more]
A0A5A7TJ524.3e-8192.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CSPI01G25400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653331.11.2e-88100.00hypothetical protein Csa_023242 [Cucumis sativus][more]
KAA0043344.19.0e-8192.68hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... [more]
KAG6573437.11.9e-5469.51hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI01G25400 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G25400.1CSPI01G25400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane