CSPI01G23640 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G23640
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	serine/arginine-rich splicing factor SR45a-like
Location	Chr1: 19130805 .. 19134027 (-)
RNA-Seq Expression	CSPI01G23640
Synteny	CSPI01G23640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAACTTCTCTCCTCTCGAGGATATATATAATGGTTTTGGCTTTCGCACGCAAAATCTCTTCTAATGCGTCTGTCGTTGAAGGCATCCGTGATTGAGTGAGAATCGATAAGAACGCTTCGTCTACTTTAGCTTTGATTTGGGTTTTGCCTTCGCTGATCTGTACGGTAAGTTCCCTTTCTGTGTTTCGTTTTATTTTCGTTTGAGATGAAATGTTTGATCTGGATATGCATTTGATTCTGCTTTCGAACAGGAAGAATTAGGTTTGGGGTTATTGTTTTATTGTTTTTTCTGTGATGAGCATGTGCATCCCTTTTTGTTGTTTGAGATGATATGTTCGGGGTTCTGATCGACATGCGCGTTTGATTCCGCTCTCTGTAATGTTTATGGAAAGAAATATATTCTGGTTATTGAGCGGGTTTTGTTTACTCTATGATTCGCTAGTTATGGGATGCAAATGGAGTAGTTTCTATAATTTACTTGAAAATTTTATTGTTAAATTAGAACCACTTCGGAGATGTTGAAGTCAACCATATTTCTTTTTATTGGAGTCATGGATCTTAAATTGCTAATTTGGTATCATTTGGAGATCGTCCGAGTTTAATCAATTTGGTTTATAATTCTATTTAGATCGATAGAAGTATAGAACACTCGTAAATATTCCTTGCAGTATGAATTATCTATGAAATTTTTATTAACGCATAAGGACTATTTTTTGAGGTTTTATTAAATCAAACTTAATTCGATTTTTTTTTAAAACCATAGGACTAAACTAGCTTTCCCCAAACAATAGGAACTTAACTTGCAAGTTAATCTTTTCTTTACTTACGACAGCTCCTTGCGCTGTTCTGTTCAAGACGATATTCATACTTAATAGTACTCTTAACATTATGGTCTTCATCGACGCTTGTGCTTCTCGTTTTAAATCTCTGTTGAATTAAGTGATTTCTTGTTTGGTTCCAGATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGTACTTCCTGCCCAGGAACCACTTGCTTGATTTTCCCACCTTCTCTAAATGATACGATGATGCATTTATTCTTATTGTATGGATTCTTAATTCGTTTTTCAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTATGTTCCTGATCTCTCATTTTTTCTTCATTCCTTCTTTCTTTTTTTCCTGGCATGCTATTCTTAGTGGCCGTGTATGTATTTTGTCTTTTGTGTTGGTGATTTAAGTTGTGGACTATCCCCAGTTCATGAATGGATGTCTTTAACTCCAGGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAAGTGAACTAATTATCTTTTCATAGACTTGGGATGTTTCCTATCGTTACTGTTGTCTTGTTCTTTAATCTGAAATGGTGTACCTGGATGATTTGTTGTTAGAGATTTGAGTTTTTTTTGCCAAGTGTTTTTTTGGCAGCAGGTTAGCTGTGTGTAGCAGCTCTTCATCAAACTCAAACTACAACTAAACAATCAAAACAAACACATGAAGCCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGCATATGTGTTGAGTTATTAAAGTGTTTTAGCTTCTTTTTTCTTTTGTGAATCTCGACACTGTGACTTTGCATCCGTGCTATGGTATTTTTCTTGGATGGAAGCTTGAGTAGCTGGTCTCACTGTTTATCTTTAATTGTTTGACAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGTAGATATCTTGGACTTAGAACAGTTCATGGTGAGATTAAAATCCAATGTTTGGCATATTGCTGTGAAATATCTTTGATATTTCTGTCTAATCCTCATCATTCTGACAGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTATTCATCTGACCGGAGCAGGAGTAGATCCCGTTCCATTGACCAACATTGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCACCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAACGTTGAGAAACCACTATCGCAGCCCCTCACAGGAATTGAGTAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGATCAGGAAGCAGTATCTATTCATCCAGTATTTCTCCCGAACGAGGCAGGAGCTCAAGGAGTCGCTCTTGTAACCATACACCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCGAGAAGCCAAAGTGTAACTTCAAGATCTGTTAGTCTGGCTTGATTAACTGATCTACTTCCCCTCTGCTACATTCTCATGATGATGTACATTTGGAGCTTTTAATACAAATCAATCAGCTGCAGATGTAAACAACTATTCCCCTTGTCTTACGGATGCCTTAGCGTTTGAGATGAAATAGTGGGTTGTGGAATAATTTATTTCTGGTTTGGTTTAATGGCGTACTAGGTGAAACGGAGAAATGTCGACAGGGAAAATGTTGTACGCTCTCAACTAATGTTCGTTCTTAATTCTATTGGGTTAGTTTGTTAACGAGGGGTGTGAAATGTTTTGGTTTAATTTGCCATTTGGATTTCCTACACTATTTGGGTTGGATGTTATGCCTTATCTGAACATGAAAAGATGCCGTATATTTGTGGTTTACCCTAATTGGATAGATTGTGAAAATTTTAATGGATG

mRNA sequence

AGAAACTTCTCTCCTCTCGAGGATATATATAATGGTTTTGGCTTTCGCACGCAAAATCTCTTCTAATGCGTCTGTCGTTGAAGGCATCCGTGATTGAGTGAGAATCGATAAGAACGCTTCGTCTACTTTAGCTTTGATTTGGGTTTTGCCTTCGCTGATCTGTACGATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGTAGATATCTTGGACTTAGAACAGTTCATGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTATTCATCTGACCGGAGCAGGAGTAGATCCCGTTCCATTGACCAACATTGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCACCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAACGTTGAGAAACCACTATCGCAGCCCCTCACAGGAATTGAGTAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGATCAGGAAGCAGTATCTATTCATCCAGTATTTCTCCCGAACGAGGCAGGAGCTCAAGGAGTCGCTCTTGTAACCATACACCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCGAGAAGCCAAAGTGTAACTTCAAGATCTGTTAGTCTGGCTTGATTAACTGATCTACTTCCCCTCTGCTACATTCTCATGATGATGTACATTTGGAGCTTTTAATACAAATCAATCAGCTGCAGATGTAAACAACTATTCCCCTTGTCTTACGGATGCCTTAGCGTTTGAGATGAAATAGTGGGTTGTGGAATAATTTATTTCTGGTTTGGTTTAATGGCGTACTAGGTGAAACGGAGAAATGTCGACAGGGAAAATGTTGTACGCTCTCAACTAATGTTCGTTCTTAATTCTATTGGGTTAGTTTGTTAACGAGGGGTGTGAAATGTTTTGGTTTAATTTGCCATTTGGATTTCCTACACTATTTGGGTTGGATGTTATGCCTTATCTGAACATGAAAAGATGCCGTATATTTGTGGTTTACCCTAATTGGATAGATTGTGAAAATTTTAATGGATG

Coding sequence (CDS)

ATGTCGTACTCCCGAAGGTCTAGATACTCCCGCTCCCCATCATTCAAACGATCTGTCTCAAGGTCTCTCTCGAGGTCAAGAAGCCGTTCAAGGAGCCCATCAAGTGATGTTGAAAATCCTGGGAACAATTTGTATGTCACTGGGTTGTCACCTAGAATAACTAGAAGAGAACTCGAGAAGCATTTTTCTGCGGAGGGGACAGTTCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAATGATGAGGCGGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGGAGACGGAGAGGCAGAACTCCAACACCTGGTAGATATCTTGGACTTAGAACAGTTCATGGGAGGCGTAGGTCGCGTAGCTACTCATCTCGGCGTTCTCCCAGCTACTCTCCATATAGAAGAAGCTCTAGCCGCTCTACGCATTATTCATCTGACCGGAGCAGGAGTAGATCCCGTTCCATTGACCAACATTGTAGAGCATATGGTTCCCCATACCATCGTAGATCGTACTCTTATAGCCGGCGAAGATATGATTCTCCAGACTATAGGCGACGTTATGATTCTCCAGACTACTATAGGCATCATAAGTCATATTCTCGATCTCGCTCACCATATAGGAGGTGGAGCCGTGACAGGTCATACTCACCTTGTGATCACTATTCCCCTGATCCTTACTACAGAAGGCACAGGTACAGGTCAGTTTCTCGGAGCCTTTCACCGAAGTCAAGGAACAGCAGACATTACTCCCGAAGTTACTCTCCTGAGCCTAGGAGAACGTTGAGAAACCACTATCGCAGCCCCTCACAGGAATTGAGTAGTTATTCACGTAGTATTTCCCCTGAACGAAGCAGATCAGGAAGCAGTATCTATTCATCCAGTATTTCTCCCGAACGAGGCAGGAGCTCAAGGAGTCGCTCTTGTAACCATACACCAAGACGACACGAGAGCACACGTAAGAGAGGGTATTCTAGTAGGAGTCGATCGAGAAGCCAAAGTGTAACTTCAAGATCTGTTAGTCTGGCTTGA

Protein sequence

MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIDQHCRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSPCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRTLRNHYRSPSQELSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCNHTPRRHESTRKRGYSSRSRSRSQSVTSRSVSLA*

Homology

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BLAST of CSPI01G23640 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.5e-59
Identity = 201/379 (53.03%), Postives = 228/379 (60.16%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-FKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S + +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSR 180
           ARRRRGRTPTPG+YLGLRT  GR +S SYS RRS S      S SRS  YSSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSC-----SRSRSRSYSSDRGRSYSP 210

Query: 181 SIDQHCRAYG-SPYHRRSYSYSRRRYDSPD--YRRRYDSPDYYRHHKSYSRSRSP-YRRW 240
           S  +  R+   SP++RR   YS  R  SPD  Y RR D            RS SP YRR 
Sbjct: 211 SYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRD------------RSYSPYYRRR 270

Query: 241 SRDRSYS-PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRTLRNHYRSP 300
            R RSYS  C      PYY R RYRS SRS SP+ R        Y     R+   HY+  
Sbjct: 271 DRSRSYSRNCRARDRSPYYMR-RYRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGR 330

Query: 301 SQELSSYSRSISPERSRSGS-----SIYSSSISPERGR-SSRSRSCNHTPRRHESTRKRG 360
            +  S  SR     RS SGS        S SISP +GR  SRS+S     RRH+      
Sbjct: 331 DRSYSPESRYYRRHRSVSGSVSPGGRSMSRSISPRKGRKESRSKS-----RRHDR----- 381

Query: 361 YSSRSRSRS-QSVTSRSVS 365
            SS   SRS +S TSRSVS
Sbjct: 391 QSSMCHSRSARSSTSRSVS 381

[Close]

BLAST of CSPI01G23640 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-15
Identity = 74/227 (32.60%), Postives = 114/227 (50.22%), Query Frame = 0


Query: 20  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLT 79
           + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P+T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 80  RESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHG 139
           + SRGFGF++ S+ +EA + I  LN     GR++ V+KA+R R  +PTPG+Y+G      
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG---YDR 198

Query: 140 RRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIDQHCRAYGSPYHRRSYSYSR 199
           RR SR + S        YRR++ R      DR  +R               +R SY  SR
Sbjct: 199 RRNSRDFPSNNKD--GGYRRNNYR------DRDSNR---------------YRNSYRPSR 258

Query: 200 RRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYSPCDHYS 247
                    +R  SP  YR  +    SR    R    RS++  +H+S
Sbjct: 259 --------PQREHSPGNYRKERYNVDSRPRRERHFHGRSFAHAEHHS 271

[Close]

BLAST of CSPI01G23640 vs. ExPASy Swiss-Prot
Match: Q06A98 (Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-11
Identity = 81/212 (38.21%), Postives = 102/212 (48.11%), Query Frame = 0


Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  NDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHGRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIDQHCRAYGSPYHRRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+SRS  +      S    RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSP 230
           SR R  SP        P   R  KS SRS+SP
Sbjct: 186 SRSRSRSP-------PPASKRESKSRSRSKSP 209

[Close]

BLAST of CSPI01G23640 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-11
Identity = 81/212 (38.21%), Postives = 102/212 (48.11%), Query Frame = 0


Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  NDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHGRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIDQHCRAYGSPYHRRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+SRS  +      S    RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSP 230
           SR R  SP        P   R  KS SRS+SP
Sbjct: 186 SRSRSRSP-------PPVSKRESKSRSRSKSP 209

[Close]

BLAST of CSPI01G23640 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-11
Identity = 81/212 (38.21%), Postives = 102/212 (48.11%), Query Frame = 0


Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  NDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHGRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIDQHCRAYGSPYHRRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+SRS  +      S    RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSP 230
           SR R  SP        P   R  KS SRS+SP
Sbjct: 186 SRSRSRSP-------PPVSKRESKSRSRSKSP 209

[Close]

BLAST of CSPI01G23640 vs. ExPASy TrEMBL
Match: A0A0A0LXJ6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 659.1 bits (1699), Expect = 1.1e-185
Identity = 362/367 (98.64%), Postives = 363/367 (98.91%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTH SSDRSRSRSRSID
Sbjct: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180

Query: 181 QHCRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240
           QH RAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS
Sbjct: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240

Query: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEP-RRTLRNHYRSPSQELSSY 300
           PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEP RRTLRNHYRSPSQELSSY
Sbjct: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSY 300

Query: 301 SRSISPERSRSGSSIYSSSISPERGRSSRSRSCNHTPRRHESTRKRGYSSRSRSRSQSVT 360
           SRSISPERSRSGSSIYSSSISPERGRSSRSRSC+HTPRRHESTRKRGYSSRSRSRSQSVT
Sbjct: 301 SRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQSVT 360

Query: 361 SRSVSLA 367
           SRSVS A
Sbjct: 361 SRSVSPA 367

[Close]

BLAST of CSPI01G23640 vs. ExPASy TrEMBL
Match: A0A1S3C508 (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 612.8 bits (1579), Expect = 9.1e-172
Identity = 344/369 (93.22%), Postives = 354/369 (95.93%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSI+
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIN 180

Query: 181 QHCRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240
           +H R+YGSPYHRRSYSYSRRRYDSP YRRRYDSPDYYRHH+SYSRS SPYRRWSRDRSYS
Sbjct: 181 RHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWSRDRSYS 240

Query: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEP-RRTLRNHYRSPSQE-LSS 300
           P D+YSPDPYYRRHRYRSVSRSLSPKSRN RHYSRSYSPEP RRTLRN+  SPS+E   S
Sbjct: 241 PYDYYSPDPYYRRHRYRSVSRSLSPKSRNGRHYSRSYSPEPRRRTLRNYSHSPSRESRRS 300

Query: 301 YSRSISPERS-RSGSSIYSSSISPERGRSSRSRSCNHTPRRHESTRKRGYSSRSRSRSQS 360
           YSRSISPERS RSGSS+YSSSISPERGRS RSRSC+HTPRRHESTRKRGYSSRSRSRSQS
Sbjct: 301 YSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHESTRKRGYSSRSRSRSQS 360

Query: 361 VTSRSVSLA 367
           VTSRSVS A
Sbjct: 361 VTSRSVSPA 369

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BLAST of CSPI01G23640 vs. ExPASy TrEMBL
Match: A0A6J1D9V3 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018970 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 2.0e-118
Identity = 283/390 (72.56%), Postives = 306/390 (78.46%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSR+SRYSRSPS++RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEK
Sbjct: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADP TRESRGFGFITMSSN+EAE CIKYLNRSVLEGRIITVEKARR
Sbjct: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEKARR 121

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTV  RRRS SYS R SPSYSPYRRSSSRS+ YSS+RSRSRS S  
Sbjct: 122 RRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSHSPY 181

Query: 181 QHCRAYGSPYHRRSYS-YSRRRYDSPDYRRRYDSPDYYRHHKSYSR--SRSPYRR---WS 240
           +H R+YGSPYH RSYS YSRRRYDSP          YYR H+SYSR  SRSPY R     
Sbjct: 182 RHRRSYGSPYHHRSYSPYSRRRYDSP----------YYRCHRSYSRSGSRSPYCRSPTRR 241

Query: 241 RDRSYSP-CDHYSPDP-YYRRHRYRSVSRSLSPKSR-NSRHYSRSYSPEPRRTLRNHYRS 300
            DRSYS   D+YS D  YYRRHRYRSVSRS+SPK+R + R YSRSYSP PRRTLR++ RS
Sbjct: 242 HDRSYSSYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRS 301

Query: 301 PSQ----------ELSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCNHTPRRH-- 360
           PS           EL SYSRS+SPERS+   S      S  R   SRSRS +HT RRH  
Sbjct: 302 PSSVRIYSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSR---SRSRSRSHTFRRHSH 361

Query: 361 ---ESTRKRGYSSRSRSRSQSVTSRSVSLA 367
              E++ KR YS  SRSRS+SV SRSVS A
Sbjct: 362 KVYENSGKREYSGXSRSRSRSVVSRSVSPA 378

[Close]

BLAST of CSPI01G23640 vs. ExPASy TrEMBL
Match: A0A6J1HP51 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464732 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 6.6e-114
Identity = 285/410 (69.51%), Postives = 308/410 (75.12%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGL-RTVHGRRR-SRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRS 180
           RRGRTPTPG+YLGL RTV  R R S SYSSRRSPSYSPY +SSS S+HYSSDRSRSRS S
Sbjct: 121 RRGRTPTPGKYLGLVRTVSERHRSSHSYSSRRSPSYSPY-KSSSCSSHYSSDRSRSRSHS 180

Query: 181 IDQHCRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYR--RWSRD 240
           +D+H R++ SP       YSRRRYDSPD          YRHH+SYSRSRSPYR     RD
Sbjct: 181 VDRHQRSF-SP-------YSRRRYDSPD----------YRHHRSYSRSRSPYRLPTRRRD 240

Query: 241 RSYSPCDHYSPDPYYRRHRY--RSVSRSLSPKSRNSRHYSRSY----------------- 300
           RSYSP D YSP+PYYRRHR+  RS SRS +P    +R   RSY                 
Sbjct: 241 RSYSPYDCYSPEPYYRRHRHWSRSYSRSRTPYRTPTRRRDRSYSPYDCYSPEPYYRRHRH 300

Query: 301 -SPEP-----------------RRTLRNHYRSPSQE-LSSYSRSISPER-SRSGSSIYSS 360
            SPEP                 RRT+R++ RSPSQE  ++YS SIS ER SRSGS  YS 
Sbjct: 301 RSPEPYYRGHKYRSVSRSLSPRRRTIRSYSRSPSQESRNTYSHSISSERSSRSGS--YSR 360

Query: 361 SISPERGRSSRSRSCNHTPRRH-ESTRKRGYSSRSRSRSQSVTSRSVSLA 367
           S+SPE  R SRSRSC+HTPRRH ES RKRG S  SRSRSQSV SR+VS A
Sbjct: 361 SVSPE-SRGSRSRSCSHTPRRHYESPRKRGDSGGSRSRSQSVVSRTVSPA 388

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BLAST of CSPI01G23640 vs. ExPASy TrEMBL
Match: A0A6J1GBJ2 (serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 3.6e-112
Identity = 275/372 (73.92%), Postives = 294/372 (79.03%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSID 180
           RRGRTPTPGRY GLRTV  RRR RSYSSRRSPSYSPY RS S S++YSSDRSRSRS S +
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 181 QHCRAYGSPYHRRSYS-YSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRR---WSRD 240
           +  R+  SPY  RSYS YSRRRYDSP          YYR H+SYSRS SP  R     RD
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSP----------YYRRHRSYSRSHSPCSRSPTRRRD 240

Query: 241 RSYSPCDHYSPDPYYRRHRYRSVSRSLSPKSR-NSRHYSRSYSPEPRRTL-RNHYRSPSQ 300
           RSYSP D+ SPD YYRRHR RSVSRS+SPK+R +SR YS SYSP  RR+  R+H RS   
Sbjct: 241 RSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS--- 300

Query: 301 ELSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCNHTPRRHESTRKRGYSSRSRSR 360
              SYSRS+SPERSR   S +S SISPER RSSRSRS +HTPR H   ++ GYS      
Sbjct: 301 --RSYSRSLSPERSRRFRS-HSHSISPER-RSSRSRSRSHTPRHH---KRGGYS----GG 348

Query: 361 SQSVTSRSVSLA 367
           S SV SRSVS A
Sbjct: 361 SGSVASRSVSPA 348

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BLAST of CSPI01G23640 vs. NCBI nr
Match: XP_004145262.1 (serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothetical protein Csa_023227 [Cucumis sativus])

HSP 1 Score: 659.1 bits (1699), Expect = 2.3e-185
Identity = 362/367 (98.64%), Postives = 363/367 (98.91%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTH SSDRSRSRSRSID
Sbjct: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180

Query: 181 QHCRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240
           QH RAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS
Sbjct: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240

Query: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEP-RRTLRNHYRSPSQELSSY 300
           PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEP RRTLRNHYRSPSQELSSY
Sbjct: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRRTLRNHYRSPSQELSSY 300

Query: 301 SRSISPERSRSGSSIYSSSISPERGRSSRSRSCNHTPRRHESTRKRGYSSRSRSRSQSVT 360
           SRSISPERSRSGSSIYSSSISPERGRSSRSRSC+HTPRRHESTRKRGYSSRSRSRSQSVT
Sbjct: 301 SRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQSVT 360

Query: 361 SRSVSLA 367
           SRSVS A
Sbjct: 361 SRSVSPA 367

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BLAST of CSPI01G23640 vs. NCBI nr
Match: XP_008457405.1 (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo])

HSP 1 Score: 612.8 bits (1579), Expect = 1.9e-171
Identity = 344/369 (93.22%), Postives = 354/369 (95.93%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSI+
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIN 180

Query: 181 QHCRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240
           +H R+YGSPYHRRSYSYSRRRYDSP YRRRYDSPDYYRHH+SYSRS SPYRRWSRDRSYS
Sbjct: 181 RHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWSRDRSYS 240

Query: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEP-RRTLRNHYRSPSQE-LSS 300
           P D+YSPDPYYRRHRYRSVSRSLSPKSRN RHYSRSYSPEP RRTLRN+  SPS+E   S
Sbjct: 241 PYDYYSPDPYYRRHRYRSVSRSLSPKSRNGRHYSRSYSPEPRRRTLRNYSHSPSRESRRS 300

Query: 301 YSRSISPERS-RSGSSIYSSSISPERGRSSRSRSCNHTPRRHESTRKRGYSSRSRSRSQS 360
           YSRSISPERS RSGSS+YSSSISPERGRS RSRSC+HTPRRHESTRKRGYSSRSRSRSQS
Sbjct: 301 YSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHESTRKRGYSSRSRSRSQS 360

Query: 361 VTSRSVSLA 367
           VTSRSVS A
Sbjct: 361 VTSRSVSPA 369

[Close]

BLAST of CSPI01G23640 vs. NCBI nr
Match: XP_038894517.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida])

HSP 1 Score: 499.6 bits (1285), Expect = 2.3e-137
Identity = 306/370 (82.70%), Postives = 320/370 (86.49%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MS SRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSCSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DPLTRESRGFGFITMSSNDEA+NCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPLTRESRGFGFITMSSNDEADNCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRSSSRST YSS+RSRSRS S+D
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTDYSSNRSRSRSHSVD 180

Query: 181 QHCRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240
           +H R+YGS Y+ RSYSYSRRRYDSPD RR          HKSYSRSRSPYRR  RDRSYS
Sbjct: 181 RHRRSYGSSYNYRSYSYSRRRYDSPDCRR----------HKSYSRSRSPYRRRHRDRSYS 240

Query: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSR-NSRHYSRSYSPEP-RRTLRNHY-RSPSQE-L 300
           P D YSPDPYYRRHRYRSVSRSLSPK+R +SRHYSRSYSPEP RRTLR  Y RS S E  
Sbjct: 241 PYDDYSPDPYYRRHRYRSVSRSLSPKARISSRHYSRSYSPEPRRRTLRRSYSRSLSWESR 300

Query: 301 SSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCNHTPRRHESTRKRGYSSRSRSRSQ 360
            SYSRSISPERSR   S YS S+SPER RSSRSRS ++T RRH S +      RSRSRS+
Sbjct: 301 RSYSRSISPERSRRSWSSYSYSVSPERSRSSRSRSRSNTSRRH-SYKLYESRRRSRSRSR 359

Query: 361 SVTSRSVSLA 367
           SVTSRSVS A
Sbjct: 361 SVTSRSVSPA 359

[Close]

BLAST of CSPI01G23640 vs. NCBI nr
Match: XP_022150940.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia])

HSP 1 Score: 435.6 bits (1119), Expect = 4.1e-118
Identity = 283/390 (72.56%), Postives = 306/390 (78.46%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSR+SRYSRSPS++RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEK
Sbjct: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADP TRESRGFGFITMSSN+EAE CIKYLNRSVLEGRIITVEKARR
Sbjct: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEKARR 121

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSID 180
           RRGRTPTPGRYLGLRTV  RRRS SYS R SPSYSPYRRSSSRS+ YSS+RSRSRS S  
Sbjct: 122 RRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSHSPY 181

Query: 181 QHCRAYGSPYHRRSYS-YSRRRYDSPDYRRRYDSPDYYRHHKSYSR--SRSPYRR---WS 240
           +H R+YGSPYH RSYS YSRRRYDSP          YYR H+SYSR  SRSPY R     
Sbjct: 182 RHRRSYGSPYHHRSYSPYSRRRYDSP----------YYRCHRSYSRSGSRSPYCRSPTRR 241

Query: 241 RDRSYSP-CDHYSPDP-YYRRHRYRSVSRSLSPKSR-NSRHYSRSYSPEPRRTLRNHYRS 300
            DRSYS   D+YS D  YYRRHRYRSVSRS+SPK+R + R YSRSYSP PRRTLR++ RS
Sbjct: 242 HDRSYSSYYDYYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRPRRTLRSYSRS 301

Query: 301 PSQ----------ELSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCNHTPRRH-- 360
           PS           EL SYSRS+SPERS+   S      S  R   SRSRS +HT RRH  
Sbjct: 302 PSSVRIYSRSPSLELRSYSRSVSPERSKRSGSYLEGRSSRSR---SRSRSRSHTFRRHSH 361

Query: 361 ---ESTRKRGYSSRSRSRSQSVTSRSVSLA 367
              E++ KR YS  SRSRS+SV SRSVS A
Sbjct: 362 KVYENSGKREYSGXSRSRSRSVVSRSVSPA 378

[Close]

BLAST of CSPI01G23640 vs. NCBI nr
Match: KAG6607292.1 (Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 422.9 bits (1086), Expect = 2.8e-114
Identity = 274/371 (73.85%), Postives = 292/371 (78.71%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 33  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 92

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSSNDEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 93  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 152

Query: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSID 180
           RRGRTPTPGRY GLRTV  RRRSRSYSSRRSPSYSPY RS S S++YSSDRSRSRS S +
Sbjct: 153 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 212

Query: 181 QHCRAYGSPYHRRSYS-YSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRW---SRD 240
           +  R+  SPYH RSYS YS RRYDSP          YYR H+SYSRS SP  R      D
Sbjct: 213 RRRRSNDSPYHYRSYSPYSGRRYDSP----------YYRRHRSYSRSHSPCSRLPTRRHD 272

Query: 241 RSYSPCDHYSPDPYYRRHRYRSVSRSLSPKSR-NSRHYSRSYSPEPRRTLRNHYRSPSQE 300
           RSYSP D+ SPDPYYRRHR RSVSRS+SPK+R +SR YSRSYSP  RR+    Y      
Sbjct: 273 RSYSPYDYCSPDPYYRRHRDRSVSRSVSPKARVSSRRYSRSYSPRHRRSASRSY----SR 332

Query: 301 LSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCNHTPRRHESTRKRGYSSRSRSRS 360
             SYSRS+SPERSR   S +S SISPER RSSRSRS +HTPR H   ++ GYS      S
Sbjct: 333 SRSYSRSLSPERSRRFRS-HSHSISPER-RSSRSRSRSHTPRHH---KRGGYS----GGS 380

Query: 361 QSVTSRSVSLA 367
            SV SRSVS A
Sbjct: 393 GSVASRSVSPA 380

[Close]

BLAST of CSPI01G23640 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 229.9 bits (585), Expect = 3.2e-60
Identity = 201/379 (53.03%), Postives = 228/379 (60.16%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-FKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S + +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSR 180
           ARRRRGRTPTPG+YLGLRT  GR +S SYS RRS S      S SRS  YSSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSC-----SRSRSRSYSSDRGRSYSP 210

Query: 181 SIDQHCRAYG-SPYHRRSYSYSRRRYDSPD--YRRRYDSPDYYRHHKSYSRSRSP-YRRW 240
           S  +  R+   SP++RR   YS  R  SPD  Y RR D            RS SP YRR 
Sbjct: 211 SYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRD------------RSYSPYYRRR 270

Query: 241 SRDRSYS-PCDHYSPDPYYRRHRYRSVSRSLSPKSRNSRHYSRSYSPEPRRTLRNHYRSP 300
            R RSYS  C      PYY R RYRS SRS SP+ R        Y     R+   HY+  
Sbjct: 271 DRSRSYSRNCRARDRSPYYMR-RYRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGR 330

Query: 301 SQELSSYSRSISPERSRSGS-----SIYSSSISPERGR-SSRSRSCNHTPRRHESTRKRG 360
            +  S  SR     RS SGS        S SISP +GR  SRS+S     RRH+      
Sbjct: 331 DRSYSPESRYYRRHRSVSGSVSPGGRSMSRSISPRKGRKESRSKS-----RRHDR----- 381

Query: 361 YSSRSRSRS-QSVTSRSVS 365
            SS   SRS +S TSRSVS
Sbjct: 391 QSSMCHSRSARSSTSRSVS 381

[Close]

BLAST of CSPI01G23640 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.5 bits (384), Expect = 6.5e-37
Identity = 109/204 (53.43%), Postives = 126/204 (61.76%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKH 61
           S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE H
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAH 90

Query: 62  FSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARRR 121
           F+ EG V    LV +P TR SRGF F+TMSS  +AE CIKYLN+SVLEGR ITVE++RR+
Sbjct: 91  FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSRRK 150

Query: 122 RGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYR-RSSSRSTHYSSDRSRS-RSRSI 181
           R RTPTPG YLGL++     R    S  R      YR R S R  +   D  RS R RS 
Sbjct: 151 RPRTPTPGHYLGLKSSRDSDREGRSSRGRHYDRDDYRDRRSPRRDYSPRDERRSRRDRSY 210

Query: 182 DQHCRAYGSPYHRRSYSYSRRRYD 204
             H R+      RRS   S RRY+
Sbjct: 211 SPHGRSPERRSERRS-ERSERRYE 233

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BLAST of CSPI01G23640 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-35
Identity = 109/205 (53.17%), Postives = 126/205 (61.46%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 121
           HF+ EG V    LV +P TR SRGF F+TMSS  +AE CIKYLN+SVLEGR ITVE++RR
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSRR 150

Query: 122 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYR-RSSSRSTHYSSDRSRS-RSRS 181
           +R RTPTPG YLGL++     R    S  R      YR R S R  +   D  RS R RS
Sbjct: 151 KRPRTPTPGHYLGLKSSRDSDREGRSSRGRHYDRDDYRDRRSPRRDYSPRDERRSRRDRS 210

Query: 182 IDQHCRAYGSPYHRRSYSYSRRRYD 204
              H R+      RRS   S RRY+
Sbjct: 211 YSPHGRSPERRSERRS-ERSERRYE 234

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BLAST of CSPI01G23640 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 140.2 bits (352), Expect = 3.3e-33
Identity = 80/120 (66.67%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-FKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S + +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 118
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S  +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

[Close]

BLAST of CSPI01G23640 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-28
Identity = 73/117 (62.39%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 118
           HF+ EG V    LV +P TR SRGF F+TMSS  +AE CIKYLN+SVLEGR ITVE+
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

The following BLAST results are available for this feature:

BLAST of CSPI01G23640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	4.5e-59	53.03	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q10422	3.0e-15	32.60	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
Q06A98	1.6e-11	38.21	Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1	[more]
Q3MHR5	2.0e-11	38.21	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	2.0e-11	38.21	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]

BLAST of CSPI01G23640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXJ6	1.1e-185	98.64	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV...	[more]
A0A1S3C508	9.1e-172	93.22	serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1D9V3	2.0e-118	72.56	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charanti...	[more]
A0A6J1HP51	6.6e-114	69.51	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1GBJ2	3.6e-112	73.92	serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata...	[more]

BLAST of CSPI01G23640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145262.1	2.3e-185	98.64	serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothe...	[more]
XP_008457405.1	1.9e-171	93.22	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]	[more]
XP_038894517.1	2.3e-137	82.70	serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida]	[more]
XP_022150940.1	4.1e-118	72.56	serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia]	[more]
KAG6607292.1	2.8e-114	73.85	Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subs...	[more]

BLAST of CSPI01G23640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	3.2e-60	53.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	6.5e-37	53.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	1.6e-35	53.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.2	3.3e-33	66.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	4.2e-28	62.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 43..116 e-value: 2.0E-22 score: 90.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 44..113 e-value: 7.2E-15 score: 54.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 42..120 score: 17.097071
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..126 e-value: 1.3E-26 score: 95.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 351..366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..366
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 8..258
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 8..258
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G23640.1	CSPI01G23640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding