CSPI01G23410 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G23410
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Elongin-C
Location	Chr1: 18990448 .. 18992386 (+)
RNA-Seq Expression	CSPI01G23410
Synteny	CSPI01G23410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGATGACAAAGAAGACCAAAACAAGAATCGAAAGCTTTCTCTTCAAAGGGAGAGGGAACAAGCATCTCTCTCAACTACGACCGAAATGAAGAAGGAAGACACTGTAAAATTGATCAGCGCTGAAGGTTTCGAGTTCGTGATTCACAAGGATGCTGCCATGGTTTCTCAAACGATTCGAAACATGCTTACTTCCCCAGGTTTCCCTTTCTCATTCTCACTTTCTGTACATCAATCCATTTTTTTGAGGCATACGATCTCATTTTTTTCAATCCTTGTTTATGTACGATGAATTTGGTGAAAATTTGGAATAATGGGTGTTTTATTTTGGATTTTCCCCCCATGTTTAGGGCTTTGTTTTACTGTTTTCGTTTTCATGGATAGGAAATTTTGCTGAATCGCAGCATAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTCACTGGAATCTTCAATTCGCGAGGTTTTCATTTCTTCTTTATTATGTCAATTTTTCTCTGTTTCTGATTAATCTGTGGAATTTCCTAACTTTCTGGTTATTTTGCTTAAACTGGCCATATTCTGATGGTTACTATTTGAAAATGTATATTGTTTATTGAAAGTTTTGATGCTTAATGTATGTTTGAATAGACTTTCTAAGTGCTTAAAAAAGTGCTTTTAGGTGCAAAGAAAATAATCCTTTCAAGCAACAAACAGTCCTTAGTTTCTCAACCTACCTCACAAATTAGTTCTGAAAAAGATGAGTTATGGATGTTATTGCACTTGTTGCCACCATTCTTGTCCATCATCTCGAAGGGTTATTAGAGGGTAATCGACTTTTAGTTTGTTACTTTTGGAATTTAGCAAATGTAGTGACATGGGTTCTATTATCATAATTTATTTTGCTATTTTTGCAAGCATCCCTTTTTTAAAATAGAAAACTGGTGTGCAGGACATCTAATTCTGCCATTTGACCTGTGCAGATTGATCTTGTTAGTCTGAAATCTTAGATTTGTATAGGAAAAGAAAAGAGAAATTTTCTGGGAAACTAGATAGAATGAATAGAAAACTACAGTGCTGTTTAATCCAGATTAATTTGGCCCGTCACCATCCATGTTTCTATAGTTACGTACTTTCTGTAGTTTCTTCTATAAGAGAGGTGTTGTAGGCATGGTGATAAGGACATGCCTCCTAGATTATAATTTACCTCACACCTATTTGAAGAATTATTCATAAATGCGTAAACAGAATTGAGACGGAGTAAGCTCTTCTCACTATTTTGCAACTTGTAACTTCCCAAAGTGTTTTTGTGGCATGTGGGAGAGCGACAAATTTTGTAGAAAGTTTTGATTGACAAGCCTCCTAGACTGTCTCACGCCCATTTGGATCCTTATTCATCCATATGTAAACAGAATTAGGCTAGAGTAAGCTCTTCTCATTATTGCAACTCGCCAGTGTTTCTATGGCAAGTGGGGGAGAGCATACTTATGGATTTAGGTAAATATTGTACAAAGGTTTGGATGGACAACAGATGAAATTAAACTTTTCATATAAACTTATGTACTTCTCATTTTCTGGCAATCTTATGTGGAATTAACTGATTAAAGATTATGTTGTCAATATTTACGCGTCCTCTTTATCTAGTTCGTTCTTGTTTCATTCTTTAACTCCATTGTCACTGATTGATTTCTTCCTTTTGTCAGTGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATATGTAACCTCTATGCACTCTTCCACCCATTTGACATTGTAATCAGATGGCAATTTTATGTGATAGATATAGATTTCCTTGACTAATAGATTGTCAGTGAAGTTCATTACAATACTACCCTTGTTTTTTTTTTTTTTTTGGTTTGGGGGGG

mRNA sequence

GTGATGACAAAGAAGACCAAAACAAGAATCGAAAGCTTTCTCTTCAAAGGGAGAGGGAACAAGCATCTCTCTCAACTACGACCGAAATGAAGAAGGAAGACACTGTAAAATTGATCAGCGCTGAAGGTTTCGAGTTCGTGATTCACAAGGATGCTGCCATGGTTTCTCAAACGATTCGAAACATGCTTACTTCCCCAGGAAATTTTGCTGAATCGCAGCATAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTCACTGGAATCTTCAATTCGCGAGTGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATATGTAACCTCTATGCACTCTTCCACCCATTTGACATTGTAATCAGATGGCAATTTTATGTGATAGATATAGATTTCCTTGACTAATAGATTGTCAGTGAAGTTCATTACAATACTACCCTTGTTTTTTTTTTTTTTTTGGTTTGGGGGGG

Coding sequence (CDS)

ATGAAGAAGGAAGACACTGTAAAATTGATCAGCGCTGAAGGTTTCGAGTTCGTGATTCACAAGGATGCTGCCATGGTTTCTCAAACGATTCGAAACATGCTTACTTCCCCAGGAAATTTTGCTGAATCGCAGCATAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTCACTGGAATCTTCAATTCGCGAGTGGGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

Protein sequence

MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT*

Homology

[Close]

BLAST of CSPI01G23410 vs. ExPASy Swiss-Prot
Match: Q2KII4 (Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-19
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFH 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CSPI01G23410 vs. ExPASy Swiss-Prot
Match: Q15369 (Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-19
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFH 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CSPI01G23410 vs. ExPASy Swiss-Prot
Match: P83940 (Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-19
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFH 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CSPI01G23410 vs. ExPASy Swiss-Prot
Match: P83941 (Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.1e-19
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 7   VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFH 66
           VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF 
Sbjct: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78

Query: 67  WNLQF--ASGKETEFPIEPELTLELMMAANYL 97
           + +++  +S +  EFPI PE+ LEL+MAAN+L
Sbjct: 79  YKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110

[Close]

BLAST of CSPI01G23410 vs. ExPASy Swiss-Prot
Match: Q9USX9 (Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=elc1 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 41/95 (43.16%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 3  KEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKIC 62
          +++ V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C
Sbjct: 2  EKEYVRLISGDGFVFILEKEIACLSGTIRAIL-NEGIFSEAQKNECTFPDIRATLLEKVC 61

Query: 63 QYFHWNLQFASGKE-TEFPIEPELTLELMMAANYL 97
          +Y H+N ++ +  +  +F I PE+ LEL++ A YL
Sbjct: 62 EYLHYNYRYKNQLDIPKFDIPPEMVLELLVTAEYL 95

[Close]

BLAST of CSPI01G23410 vs. ExPASy TrEMBL
Match: A0A1S3C6T3 (Elongin-C OS=Cucumis melo OX=3656 GN=LOC103497125 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 5.9e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. ExPASy TrEMBL
Match: A0A0A0LY44 (Elongin-C OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 5.9e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. ExPASy TrEMBL
Match: A0A6J1DWE1 (Elongin-C OS=Momordica charantia OX=3673 GN=LOC111024690 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. ExPASy TrEMBL
Match: A0A6J1HJP6 (Elongin-C OS=Cucurbita moschata OX=3662 GN=LOC111464707 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. ExPASy TrEMBL
Match: A0A6J1KFM7 (Elongin-C OS=Cucurbita maxima OX=3661 GN=LOC111493436 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.5e-47
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTPILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWHLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. NCBI nr
Match: XP_008457436.1 (PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_008457437.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. NCBI nr
Match: XP_022158132.1 (elongin-C [Momordica charantia])

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. NCBI nr
Match: XP_038895699.1 (elongin-C [Benincasa hispida] >XP_038895700.1 elongin-C [Benincasa hispida])

HSP 1 Score: 199.1 bits (505), Expect = 1.7e-47
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. NCBI nr
Match: XP_031741205.1 (LOW QUALITY PROTEIN: elongin-C [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 1.7e-47
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYFHWNL F SGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFHWNLPFVSGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. NCBI nr
Match: XP_022964706.1 (elongin-C-like [Cucurbita moschata] >XP_023519299.1 elongin-C-like [Cucurbita pepo subsp. pepo] >XP_023521052.1 elongin-C-like [Cucurbita pepo subsp. pepo] >KAG6583404.1 Elongin-C, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019170.1 Elongin-C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.0 bits (502), Expect = 3.9e-47
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60
          MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK
Sbjct: 1  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEK 60

Query: 61 ICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          ICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Sbjct: 61 ICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT 98

[Close]

BLAST of CSPI01G23410 vs. TAIR 10
Match: AT5G59140.1 (BTB/POZ domain-containing protein )

HSP 1 Score: 156.8 bits (395), Expect = 9.3e-39
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 5  DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQY 64
          +TVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQY
Sbjct: 3  ETVKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62

Query: 65 FHWNLQFASGKETEFPIEPELTLELMMAANYLHT 99
          F+W+LQ++ GKETEF IEPELTLELMMAANYLHT
Sbjct: 63 FYWSLQYSRGKETEFHIEPELTLELMMAANYLHT 96

The following BLAST results are available for this feature:

BLAST of CSPI01G23410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2KII4	6.1e-19	47.83	Elongin-C OS=Bos taurus OX=9913 GN=ELOC PE=1 SV=1	[more]
Q15369	6.1e-19	47.83	Elongin-C OS=Homo sapiens OX=9606 GN=ELOC PE=1 SV=1	[more]
P83940	6.1e-19	47.83	Elongin-C OS=Mus musculus OX=10090 GN=Eloc PE=1 SV=1	[more]
P83941	6.1e-19	47.83	Elongin-C OS=Rattus norvegicus OX=10116 GN=Eloc PE=1 SV=1	[more]
Q9USX9	1.7e-16	43.16	Elongin-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=el...	[more]

BLAST of CSPI01G23410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C6T3	5.9e-49	100.00	Elongin-C OS=Cucumis melo OX=3656 GN=LOC103497125 PE=3 SV=1	[more]
A0A0A0LY44	5.9e-49	100.00	Elongin-C OS=Cucumis sativus OX=3659 GN=Csa_1G525280 PE=3 SV=1	[more]
A0A6J1DWE1	1.7e-48	98.98	Elongin-C OS=Momordica charantia OX=3673 GN=LOC111024690 PE=3 SV=1	[more]
A0A6J1HJP6	1.9e-47	96.94	Elongin-C OS=Cucurbita moschata OX=3662 GN=LOC111464707 PE=3 SV=1	[more]
A0A6J1KFM7	5.5e-47	96.94	Elongin-C OS=Cucurbita maxima OX=3661 GN=LOC111493436 PE=3 SV=1	[more]

BLAST of CSPI01G23410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457436.1	1.2e-48	100.00	PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo] >XP_00...	[more]
XP_022158132.1	3.5e-48	98.98	elongin-C [Momordica charantia]	[more]
XP_038895699.1	1.7e-47	97.96	elongin-C [Benincasa hispida] >XP_038895700.1 elongin-C [Benincasa hispida]	[more]
XP_031741205.1	1.7e-47	97.96	LOW QUALITY PROTEIN: elongin-C [Cucumis sativus]	[more]
XP_022964706.1	3.9e-47	96.94	elongin-C-like [Cucurbita moschata] >XP_023519299.1 elongin-C-like [Cucurbita pe...	[more]

BLAST of CSPI01G23410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59140.1	9.3e-39	79.79	BTB/POZ domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..98 e-value: 2.5E-7 score: 40.4
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 5..98 e-value: 4.9E-28 score: 99.5
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 4..97
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..67 e-value: 9.8E-9 score: 35.3
None	No IPR available	PANTHER	PTHR20648:SF0	ELONGIN-C	coord: 2..98
None	No IPR available	CDD	cd18321	BTB_POZ_EloC	coord: 6..98 e-value: 1.05641E-47 score: 145.423
IPR039948	Elongin-C	PANTHER	PTHR20648	ELONGIN-C	coord: 2..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G23410.1	CSPI01G23410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0070449	elongin complex
molecular_function	GO:0003746	translation elongation factor activity