CSPI01G23390 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G23390
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 18981704 .. 18982007 (+)
RNA-Seq ExpressionCSPI01G23390
SyntenyCSPI01G23390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGATGTGGTGGATGGAAGTGGAAGGAAGGTTCCTAAAATCCGTTAAGAGTGGAAACGTGTAATTGGTGAGGGGATGAAGAAAAGAGGGTAGCCATTATCCATACGATCCGTTAAATTCCGACGAGGAGAAACCCAGGTGGCAGTAGGGTTCCGATACGGCGGCGACACGAGTCGCGGGGGAAAGGGGGGAGTTGGGGAAAAGGGGGATACGTGGAGAGGGGGAGCGGCGCATGGAAGGCAAATTGCGGGGCGGCGTAGGATTCAGTGCCGGCGGTGGGAAATGTGTAAGTGCAGGTGA

mRNA sequence

ATGATTAGATGTGGTGGATGGAAGTGGAAGGAAGGAGAAACCCAGGTGGCAGTAGGGTTCCGATACGGCGGCGACACGAGTCGCGGGGGAAAGGGGGGAGTTGGGGAAAAGGGGGATACGTGGAGAGGGGGAGCGGCGCATGGAAGGCAAATTGCGGGGCGGCGTAGGATTCAGTGCCGGCGGTGGGAAATGTGTAAGTGCAGGTGA

Coding sequence (CDS)

ATGATTAGATGTGGTGGATGGAAGTGGAAGGAAGGAGAAACCCAGGTGGCAGTAGGGTTCCGATACGGCGGCGACACGAGTCGCGGGGGAAAGGGGGGAGTTGGGGAAAAGGGGGATACGTGGAGAGGGGGAGCGGCGCATGGAAGGCAAATTGCGGGGCGGCGTAGGATTCAGTGCCGGCGGTGGGAAATGTGTAAGTGCAGGTGA

Protein sequence

MIRCGGWKWKEGETQVAVGFRYGGDTSRGGKGGVGEKGDTWRGGAAHGRQIAGRRRIQCRRWEMCKCR*
Homology
[Close]
BLAST of CSPI01G23390 vs. ExPASy TrEMBL
Match: A0A0A0LUZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525260 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MIRCGGWKWKEGETQVAVGFRYGGDTSRGGKGGVGEKGDTWRGGAAHGRQIAGRRRIQCR 60
          MIRCGGWKWKEGETQVAVGFRYGGDTSRGGKGGVGEKGDTWRGGAAHGRQIAGRRRIQCR
Sbjct: 1  MIRCGGWKWKEGETQVAVGFRYGGDTSRGGKGGVGEKGDTWRGGAAHGRQIAGRRRIQCR 60

Query: 61 RWEMCKCR 69
          RWEMCKCR
Sbjct: 61 RWEMCKCR 68

[Close]
BLAST of CSPI01G23390 vs. NCBI nr
Match: KGN65755.1 (hypothetical protein Csa_020053 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MIRCGGWKWKEGETQVAVGFRYGGDTSRGGKGGVGEKGDTWRGGAAHGRQIAGRRRIQCR 60
          MIRCGGWKWKEGETQVAVGFRYGGDTSRGGKGGVGEKGDTWRGGAAHGRQIAGRRRIQCR
Sbjct: 1  MIRCGGWKWKEGETQVAVGFRYGGDTSRGGKGGVGEKGDTWRGGAAHGRQIAGRRRIQCR 60

Query: 61 RWEMCKCR 69
          RWEMCKCR
Sbjct: 61 RWEMCKCR 68

The following BLAST results are available for this feature:
BLAST of CSPI01G23390 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G23390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUZ71.2e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525260 PE=4 SV=1[more]
BLAST of CSPI01G23390 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65755.12.5e-32100.00hypothetical protein Csa_020053 [Cucumis sativus][more]
BLAST of CSPI01G23390 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23390.1CSPI01G23390.1mRNA