CSPI01G22240 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G22240
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionankyrin repeat-containing protein NPR4-like
LocationChr1: 17780159 .. 17780503 (+)
RNA-Seq ExpressionCSPI01G22240
SyntenyCSPI01G22240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATGTCTGATTTTAGCTGAAAACAACACCACCACTAAAATCCAAAACACTTCGGTGACCATTGCTCCTACATATACTGCCATCAACACTTCGTTTGGACATCCTTTGGACACATCTCTCTCTATTAAGCTTGATGACAAAAAACTTGGACTATGGAGAGGCATGGTTCTTGCTGTTCTTCGAGGCCAAAAGGTAGATGGGTATGTTCTTGGCGCAAAAAGTCAACCACCTCAATCCTTAAAGTCAAATGGTGAAGCTAGTTCTTCTACTTCAGTATTAATCCAGCCTTTGAAGAATAGACAGCAACAGATCAAACTCTTTTTGGATGGTTACTTGGTTCAG

mRNA sequence

ATGTCATGTCTGATTTTAGCTGAAAACAACACCACCACTAAAATCCAAAACACTTCGGTGACCATTGCTCCTACATATACTGCCATCAACACTTCGTTTGGACATCCTTTGGACACATCTCTCTCTATTAAGCTTGATGACAAAAAACTTGGACTATGGAGAGGCATGGTTCTTGCTGTTCTTCGAGGCCAAAAGGTAGATGGGTATGTTCTTGGCGCAAAAAGTCAACCACCTCAATCCTTAAAGTCAAATGGTGAAGCTAGTTCTTCTACTTCAGTATTAATCCAGCCTTTGAAGAATAGACAGCAACAGATCAAACTCTTTTTGGATGGTTACTTGGTTCAG

Coding sequence (CDS)

ATGTCATGTCTGATTTTAGCTGAAAACAACACCACCACTAAAATCCAAAACACTTCGGTGACCATTGCTCCTACATATACTGCCATCAACACTTCGTTTGGACATCCTTTGGACACATCTCTCTCTATTAAGCTTGATGACAAAAAACTTGGACTATGGAGAGGCATGGTTCTTGCTGTTCTTCGAGGCCAAAAGGTAGATGGGTATGTTCTTGGCGCAAAAAGTCAACCACCTCAATCCTTAAAGTCAAATGGTGAAGCTAGTTCTTCTACTTCAGTATTAATCCAGCCTTTGAAGAATAGACAGCAACAGATCAAACTCTTTTTGGATGGTTACTTGGTTCAG

Protein sequence

MSCLILAENNTTTKIQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAVLRGQKVDGYVLGAKSQPPQSLKSNGEASSSTSVLIQPLKNRQQQIKLFLDGYLVQ
Homology
[Close]
BLAST of CSPI01G22240 vs. ExPASy TrEMBL
Match: A0A0A0LXU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G477520 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.5e-53
Identity = 112/115 (97.39%), Postives = 113/115 (98.26%), Query Frame = 0 

Query: 1   MSCLILAENNTTTKIQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAV 60
           MSCLILAENNTTTKIQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKK GLWRGMVLAV
Sbjct: 1   MSCLILAENNTTTKIQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKKFGLWRGMVLAV 60

Query: 61  LRGQKVDGYVLGAKSQPPQSLKSNGEASSSTSVLIQPLKNRQQQIKLFLDGYLVQ 116
           LRGQKVDGYVLGAKSQPPQSLKSN EASSSTSVLIQPLKNRQQQIKLFLDGY+VQ
Sbjct: 61  LRGQKVDGYVLGAKSQPPQSLKSNDEASSSTSVLIQPLKNRQQQIKLFLDGYMVQ 115

[Close]
BLAST of CSPI01G22240 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.1e-14
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 0 

Query: 15  IQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAVLRGQKVDGYVLGAK 74
           + N +V         NTSFGHPL T L++KLDDK   LWRGMVLAVLRGQK DGYVLG  
Sbjct: 16  VTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTL 75

Query: 75  SQPPQSLKSNGEASSSTSVLIQPLKNRQQQIKLFLDGYL 114
           ++PPQ L S     +S  + + P     Q +   L G+L
Sbjct: 76  AKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWL 114

[Close]
BLAST of CSPI01G22240 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.1e-14
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 0 

Query: 15  IQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAVLRGQKVDGYVLGAK 74
           + N +V         NTSFGHPL T L++KLDDK   LWRGMVLAVLRGQK DGYVLG  
Sbjct: 16  VTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTL 75

Query: 75  SQPPQSLKSNGEASSSTSVLIQPLKNRQQQIKLFLDGYL 114
           ++PPQ L S     +S  + + P     Q +   L G+L
Sbjct: 76  AKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWL 114

[Close]
BLAST of CSPI01G22240 vs. ExPASy TrEMBL
Match: A0A6J1CPQ7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111013443 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 23  APTYTAINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAVLRGQKVDGYVLGAKSQPPQSLK 82
           A  ++AIN SFGHPL T+L++KLDDK   LW+GMVLAVL GQKVDGYVL  K+ P     
Sbjct: 17  ATVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCP----- 76

Query: 83  SNGEASSSTSVLIQPLKN 101
           S    ++S + +++P  N
Sbjct: 77  SKYTTTTSDTGMLEPTLN 89

[Close]
BLAST of CSPI01G22240 vs. ExPASy TrEMBL
Match: A0A5A7TWE0 (Retrotransposon polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001810 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.6e-05
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 28 AINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAVLRGQKVDGYVLGAKSQPPQSLKSNGEA 87
          A +T+FGH L + L +KLD+    LW  MV++VL  QK+DG+VLG K +P + +    E 
Sbjct: 23 ASSTTFGHLLSSVLIVKLDEINYSLWHNMVMSVLNSQKIDGFVLGTKLKPSKVIFYADEP 82

Query: 88 SSS 91
           SS
Sbjct: 83 GSS 85

[Close]
BLAST of CSPI01G22240 vs. NCBI nr
Match: KGN65642.1 (hypothetical protein Csa_019906 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 9.4e-53
Identity = 112/115 (97.39%), Postives = 113/115 (98.26%), Query Frame = 0 

Query: 1   MSCLILAENNTTTKIQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAV 60
           MSCLILAENNTTTKIQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKK GLWRGMVLAV
Sbjct: 1   MSCLILAENNTTTKIQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKKFGLWRGMVLAV 60

Query: 61  LRGQKVDGYVLGAKSQPPQSLKSNGEASSSTSVLIQPLKNRQQQIKLFLDGYLVQ 116
           LRGQKVDGYVLGAKSQPPQSLKSN EASSSTSVLIQPLKNRQQQIKLFLDGY+VQ
Sbjct: 61  LRGQKVDGYVLGAKSQPPQSLKSNDEASSSTSVLIQPLKNRQQQIKLFLDGYMVQ 115

[Close]
BLAST of CSPI01G22240 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 0 

Query: 15  IQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAVLRGQKVDGYVLGAK 74
           + N +V         NTSFGHPL T L++KLDDK   LWRGMVLAVLRGQK DGYVLG  
Sbjct: 16  VTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTL 75

Query: 75  SQPPQSLKSNGEASSSTSVLIQPLKNRQQQIKLFLDGYL 114
           ++PPQ L S     +S  + + P     Q +   L G+L
Sbjct: 76  AKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWL 114

[Close]
BLAST of CSPI01G22240 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 48/99 (48.48%), Postives = 59/99 (59.60%), Query Frame = 0 

Query: 15  IQNTSVTIAPTYTAINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAVLRGQKVDGYVLGAK 74
           + N +V         NTSFGHPL T L++KLDDK   LWRGMVLAVLRGQK DGYVLG  
Sbjct: 16  VTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTL 75

Query: 75  SQPPQSLKSNGEASSSTSVLIQPLKNRQQQIKLFLDGYL 114
           ++PPQ L S     +S  + + P     Q +   L G+L
Sbjct: 76  AKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWL 114

[Close]
BLAST of CSPI01G22240 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-11
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 23  APTYTAINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAVLRGQKVDGYVLGAKSQPPQSLK 82
           A  ++AIN SFGHPL T+L++KLDDK   LW+GMVLAVL GQKVDGYVL  K+ P     
Sbjct: 17  ATVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCP----- 76

Query: 83  SNGEASSSTSVLIQPLKN 101
           S    ++S + +++P  N
Sbjct: 77  SKYTTTTSDTGMLEPTLN 89

[Close]
BLAST of CSPI01G22240 vs. NCBI nr
Match: KAA0047903.1 (retrotransposon polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 9.5e-05
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 28 AINTSFGHPLDTSLSIKLDDKKLGLWRGMVLAVLRGQKVDGYVLGAKSQPPQSLKSNGEA 87
          A +T+FGH L + L +KLD+    LW  MV++VL  QK+DG+VLG K +P + +    E 
Sbjct: 23 ASSTTFGHLLSSVLIVKLDEINYSLWHNMVMSVLNSQKIDGFVLGTKLKPSKVIFYADEP 82

Query: 88 SSS 91
           SS
Sbjct: 83 GSS 85

The following BLAST results are available for this feature:
BLAST of CSPI01G22240 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G22240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXU04.5e-5397.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G477520 PE=4 SV=1[more]
A0A6J1DU777.1e-1448.48uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DTZ77.1e-1448.48uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CPQ71.5e-1152.56ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A5A7TWE04.6e-0544.44Retrotransposon polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of CSPI01G22240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65642.19.4e-5397.39hypothetical protein Csa_019906 [Cucumis sativus][more]
XP_022157748.11.5e-1348.48uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.11.5e-1348.48uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
XP_022143579.13.1e-1152.56ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
KAA0047903.19.5e-0544.44retrotransposon polyprotein [Cucumis melo var. makuwa][more]
BLAST of CSPI01G22240 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G22240.1CSPI01G22240.1mRNA