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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCGATTGGAAGACACGGGATGCGCGCAGCTGCGGTTCATGCACGAAGACAAACGCAGACGAACGACGCTCCAACTTCAGCTCCAACGAAATGACGAACGGCTTGGGACGCGTTGTGTTTGGGTAGTTGTTGACTGTAAAGAGACGTGCGCGACGACGGCTTCACAAACGGAAAAATGGATGCGGTCAGAAACGAGTCGTCGGTGGCTGCGCTTCACGATCGAAGACCAACCGCGGTCAAAAGAGAATGGTCGGCGACTTCAACTGGACTTTGATCGGACACGAACTGCACGTGACACAACGGCTCGAGATGCGGCTGTTGAAGGCGAATGA mRNA sequence ATGCGATTGGAAGACACGGGATGCGCGCAGCTGCGGTTCATGCACGAAGACAAACGCAGACGAACGACGCTCCAACTTCAGCTCCAACGAAATGACGAACGGCTTGGGACGCGTTGTGTTTGGGTAGTTGTTGACTGTAAAGAGACGTGCGCGACGACGGCTTCACAAACGGAAAAATGGATGCGGTCAGAAACGAGTCGTCGGTGGCTGCGCTTCACGATCGAAGACCAACCGCGGTCAAAAGAGAATGGTCGGCGACTTCAACTGGACTTTGATCGGACACGAACTGCACGTGACACAACGGCTCGAGATGCGGCTGTTGAAGGCGAATGA Coding sequence (CDS) ATGCGATTGGAAGACACGGGATGCGCGCAGCTGCGGTTCATGCACGAAGACAAACGCAGACGAACGACGCTCCAACTTCAGCTCCAACGAAATGACGAACGGCTTGGGACGCGTTGTGTTTGGGTAGTTGTTGACTGTAAAGAGACGTGCGCGACGACGGCTTCACAAACGGAAAAATGGATGCGGTCAGAAACGAGTCGTCGGTGGCTGCGCTTCACGATCGAAGACCAACCGCGGTCAAAAGAGAATGGTCGGCGACTTCAACTGGACTTTGATCGGACACGAACTGCACGTGACACAACGGCTCGAGATGCGGCTGTTGAAGGCGAATGA Protein sequence MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERLGTRCVWVVVDCKETCATTASQTEKWMRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAVEGE*
Homology
BLAST of CSPI01G21990 vs. ExPASy TrEMBL
Match: A0A0A0LXR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470330 PE=4 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53 Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0
Query: 1 MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERLGTRCVWVVVDCKETCATTASQTEKW 60
MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDER GTRCVWVVVDCKETCATTASQTEKW
Sbjct: 1 MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERHGTRCVWVVVDCKETCATTASQTEKW 60
Query: 61 MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAVEGE 111
MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAVEGE
Sbjct: 61 MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAVEGE 110
BLAST of CSPI01G21990 vs. NCBI nr
Match: KGN65971.2 (hypothetical protein Csa_020121 [Cucumis sativus]) HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47 Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0
Query: 1 MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERLGTRCVWVVVDCKETCATTASQTEKW 60
MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDER GTRCVWVVVDCKETCATTASQTEKW
Sbjct: 1 MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERHGTRCVWVVVDCKETCATTASQTEKW 60
Query: 61 MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAV 108
MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTA TTAR AV
Sbjct: 61 MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTA-PTTARPIAV 106
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LXR6 | 1.5e-53 | 99.09 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470330 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN65971.2 | 2.6e-47 | 95.33 | hypothetical protein Csa_020121 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 79..110 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006338 |
chromatin remodeling |
| biological_process |
GO:0034721 |
histone H3-K4 demethylation, trimethyl-H3-K4-specific |
| biological_process |
GO:0010468 |
regulation of gene expression |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0034647 |
histone H3-tri/di/monomethyl-lysine-4 demethylase activity |
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