CSPI01G21990 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G21990
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 17538845 .. 17539177 (+)
RNA-Seq Expression	CSPI01G21990
Synteny	CSPI01G21990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTGGAAGACACGGGATGCGCGCAGCTGCGGTTCATGCACGAAGACAAACGCAGACGAACGACGCTCCAACTTCAGCTCCAACGAAATGACGAACGGCTTGGGACGCGTTGTGTTTGGGTAGTTGTTGACTGTAAAGAGACGTGCGCGACGACGGCTTCACAAACGGAAAAATGGATGCGGTCAGAAACGAGTCGTCGGTGGCTGCGCTTCACGATCGAAGACCAACCGCGGTCAAAAGAGAATGGTCGGCGACTTCAACTGGACTTTGATCGGACACGAACTGCACGTGACACAACGGCTCGAGATGCGGCTGTTGAAGGCGAATGA

mRNA sequence

ATGCGATTGGAAGACACGGGATGCGCGCAGCTGCGGTTCATGCACGAAGACAAACGCAGACGAACGACGCTCCAACTTCAGCTCCAACGAAATGACGAACGGCTTGGGACGCGTTGTGTTTGGGTAGTTGTTGACTGTAAAGAGACGTGCGCGACGACGGCTTCACAAACGGAAAAATGGATGCGGTCAGAAACGAGTCGTCGGTGGCTGCGCTTCACGATCGAAGACCAACCGCGGTCAAAAGAGAATGGTCGGCGACTTCAACTGGACTTTGATCGGACACGAACTGCACGTGACACAACGGCTCGAGATGCGGCTGTTGAAGGCGAATGA

Coding sequence (CDS)

ATGCGATTGGAAGACACGGGATGCGCGCAGCTGCGGTTCATGCACGAAGACAAACGCAGACGAACGACGCTCCAACTTCAGCTCCAACGAAATGACGAACGGCTTGGGACGCGTTGTGTTTGGGTAGTTGTTGACTGTAAAGAGACGTGCGCGACGACGGCTTCACAAACGGAAAAATGGATGCGGTCAGAAACGAGTCGTCGGTGGCTGCGCTTCACGATCGAAGACCAACCGCGGTCAAAAGAGAATGGTCGGCGACTTCAACTGGACTTTGATCGGACACGAACTGCACGTGACACAACGGCTCGAGATGCGGCTGTTGAAGGCGAATGA

Protein sequence

MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERLGTRCVWVVVDCKETCATTASQTEKWMRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAVEGE*

Homology

[Close]

BLAST of CSPI01G21990 vs. ExPASy TrEMBL
Match: A0A0A0LXR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470330 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERLGTRCVWVVVDCKETCATTASQTEKW 60
           MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDER GTRCVWVVVDCKETCATTASQTEKW
Sbjct: 1   MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERHGTRCVWVVVDCKETCATTASQTEKW 60

Query: 61  MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAVEGE 111
           MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAVEGE
Sbjct: 61  MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAVEGE 110

[Close]

BLAST of CSPI01G21990 vs. NCBI nr
Match: KGN65971.2 (hypothetical protein Csa_020121 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERLGTRCVWVVVDCKETCATTASQTEKW 60
           MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDER GTRCVWVVVDCKETCATTASQTEKW
Sbjct: 1   MRLEDTGCAQLRFMHEDKRRRTTLQLQLQRNDERHGTRCVWVVVDCKETCATTASQTEKW 60

Query: 61  MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTARDTTARDAAV 108
           MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTA  TTAR  AV
Sbjct: 61  MRSETSRRWLRFTIEDQPRSKENGRRLQLDFDRTRTA-PTTARPIAV 106

The following BLAST results are available for this feature:

BLAST of CSPI01G21990 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G21990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR6	1.5e-53	99.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470330 PE=4 SV=1	[more]

BLAST of CSPI01G21990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65971.2	2.6e-47	95.33	hypothetical protein Csa_020121 [Cucumis sativus]	[more]

BLAST of CSPI01G21990 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G21990.1	CSPI01G21990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0034721	histone H3-K4 demethylation, trimethyl-H3-K4-specific
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005634	nucleus
molecular_function	GO:0034647	histone H3-tri/di/monomethyl-lysine-4 demethylase activity