CSPI01G21570 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G21570
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 17153634 .. 17153921 (+)
RNA-Seq Expression	CSPI01G21570
Synteny	CSPI01G21570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCACTTGTACAAATAGAATTGAGAACCCTTCTCATTTTGAGCCTGGACGACGTGAAAATCCAGTAGTGTCCCCAGCACAATTGTTTTACCTGATAAATGAAAGCATTCGACGGGTCCATTTTTCAGTTGTGACAACGTTGGATGGTCAGATTTGGTGTGAAAATTGTATGCAATATGTTTGTAAATGATAAAGTCGGATTTAGAAGTTTGTGAAGTTCTTGTATTTAGTAGTTGCCGCTGCTGGTGCATGTTTCAGCAATGCGGCAGTGTATATGAATGAAAAC

mRNA sequence

ATGAGCACTTGTACAAATAGAATTGAGAACCCTTCTCATTTTGAGCCTGGACGACGTGAAAATCCAGTAGTGTCCCCAGCACAATTGTTTTACCTGATAAATGAAAGCATTCGACGGGTCCATTTTTCAGTTGTGACAACGTTGGATGTAGTTGCCGCTGCTGGTGCATGTTTCAGCAATGCGGCAGTGTATATGAATGAAAAC

Coding sequence (CDS)

ATGAGCACTTGTACAAATAGAATTGAGAACCCTTCTCATTTTGAGCCTGGACGACGTGAAAATCCAGTAGTGTCCCCAGCACAATTGTTTTACCTGATAAATGAAAGCATTCGACGGGTCCATTTTTCAGTTGTGACAACGTTGGATGTAGTTGCCGCTGCTGGTGCATGTTTCAGCAATGCGGCAGTGTATATGAATGAAAAC

Protein sequence

MSTCTNRIENPSHFEPGRRENPVVSPAQLFYLINESIRRVHFSVVTTLDVVAAAGACFSNAAVYMNEN

Homology

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BLAST of CSPI01G21570 vs. ExPASy TrEMBL
Match: A0A0A0LUI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G461010 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.6e-24
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 8   IENPSHFEPGRRENPVVSPAQLFYLINESIRRVHFSVVTTLDVVAAAGACFSNAAVYMNE 67
           IENPSHFEPGRRENPVVSPAQLFYLINESIRRVHFSVVTTLD VAAAGACFSNAAVYMNE
Sbjct: 70  IENPSHFEPGRRENPVVSPAQLFYLINESIRRVHFSVVTTLD-VAAAGACFSNAAVYMNE 129

Query: 68  N 69
           N
Sbjct: 130 N 129

The following BLAST results are available for this feature:

BLAST of CSPI01G21570 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G21570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUI4	7.6e-24	98.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G461010 PE=4 SV=1	[more]

BLAST of CSPI01G21570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI01G21570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G21570.1	CSPI01G21570.1	mRNA