CSPI01G21520 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G21520
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
LocationChr1: 17100666 .. 17101199 (+)
RNA-Seq ExpressionCSPI01G21520
SyntenyCSPI01G21520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCGAAGGATCTTCGAGGAGAAGATGAAACGAAAAACGAAGAGAAGAAACCGAATGACGAAGGGAAAAATGACCGAAACAAATTCAAGAAGGTGGAGATGCCGATATTCAACAGAGATGATCTCGATTCGTGGTTATTTCTTGCTGAGAGGTATTTTCATATCCATAGACTCATTGAATCTGAGAAAATGACAATTTCTACTATAAGTTTCGAAGGACCAGCGCTGAATTGGTTTCGTTCTCAAGAGGAACGGGAGAAGTTTGTTGATTGGGCGAATATGAAGGAGAGGTTGTTAGAGAGATTCCGTTCATCGAGAGAAGGATCCTTGTATGGGCGATTTTTGCGTATCCAACAAACAACAATTGTGGATGAATATCAAAATTTATTCGATAAGTGGGTATCACCACTAACTGATTTACCTGAAAAAGTAGTAGAAGAGACGTTTGTTTCGGGATTGAAACCATGGATTCAAGCAGAGATGGACTTTTGCGAACCGAAAGGTTTAGCCCATATGATGAAGATAGCGTAG

mRNA sequence

ATGAATGCGAAGGATCTTCGAGGAGAAGATGAAACGAAAAACGAAGAGAAGAAACCGAATGACGAAGGGAAAAATGACCGAAACAAATTCAAGAAGGTGGAGATGCCGATATTCAACAGAGATGATCTCGATTCGTGGTTATTTCTTGCTGAGAGGTATTTTCATATCCATAGACTCATTGAATCTGAGAAAATGACAATTTCTACTATAAGTTTCGAAGGACCAGCGCTGAATTGGTTTCGTTCTCAAGAGGAACGGGAGAAGTTTGTTGATTGGGCGAATATGAAGGAGAGGTTGTTAGAGAGATTCCGTTCATCGAGAGAAGGATCCTTGTATGGGCGATTTTTGCGTATCCAACAAACAACAATTGTGGATGAATATCAAAATTTATTCGATAAGTGGGTATCACCACTAACTGATTTACCTGAAAAAGTAGTAGAAGAGACGTTTGTTTCGGGATTGAAACCATGGATTCAAGCAGAGATGGACTTTTGCGAACCGAAAGGTTTAGCCCATATGATGAAGATAGCGTAG

Coding sequence (CDS)

ATGAATGCGAAGGATCTTCGAGGAGAAGATGAAACGAAAAACGAAGAGAAGAAACCGAATGACGAAGGGAAAAATGACCGAAACAAATTCAAGAAGGTGGAGATGCCGATATTCAACAGAGATGATCTCGATTCGTGGTTATTTCTTGCTGAGAGGTATTTTCATATCCATAGACTCATTGAATCTGAGAAAATGACAATTTCTACTATAAGTTTCGAAGGACCAGCGCTGAATTGGTTTCGTTCTCAAGAGGAACGGGAGAAGTTTGTTGATTGGGCGAATATGAAGGAGAGGTTGTTAGAGAGATTCCGTTCATCGAGAGAAGGATCCTTGTATGGGCGATTTTTGCGTATCCAACAAACAACAATTGTGGATGAATATCAAAATTTATTCGATAAGTGGGTATCACCACTAACTGATTTACCTGAAAAAGTAGTAGAAGAGACGTTTGTTTCGGGATTGAAACCATGGATTCAAGCAGAGATGGACTTTTGCGAACCGAAAGGTTTAGCCCATATGATGAAGATAGCGTAG

Protein sequence

MNAKDLRGEDETKNEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESEKMTISTISFEGPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTIVDEYQNLFDKWVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA*
Homology
BLAST of CSPI01G21520 vs. ExPASy TrEMBL
Match: A0A5A7SZK8 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00030 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.3e-59
Identity = 111/164 (67.68%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 14  NEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESEKMTISTISFE 73
           NE +K  +E  NDR+KFKKVEMP+FN +D D+WLF A+RYF IHRL +SEKMTI+TISFE
Sbjct: 30  NENEKNGEEKNNDRSKFKKVEMPVFNGEDPDAWLFRADRYFQIHRLTDSEKMTIATISFE 89

Query: 74  GPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTIVDEYQNLFDK 133
           GPALNW+R+QEER+KF DWAN+KERLL RFRSSREGS+Y +FLRIQQ + V+EYQN FD+
Sbjct: 90  GPALNWYRAQEERDKFKDWANLKERLLVRFRSSREGSIYLQFLRIQQESSVEEYQNKFDR 149

Query: 134 WVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
            ++P++DLP++V+EETF+ GL PWI+AE++FC P GLA MM +A
Sbjct: 150 LMAPVSDLPDRVIEETFMGGLFPWIKAEVEFCRPTGLAEMMLLA 193

BLAST of CSPI01G21520 vs. ExPASy TrEMBL
Match: A0A5A7VAG8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001800 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.6e-59
Identity = 114/174 (65.52%), Postives = 146/174 (83.91%), Query Frame = 0

Query: 5   DLRGEDET-KNEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESE 64
           D+ G  E  +NE K  ND+   DR+KFKKVEMP+F+ +D DSWLF AERYF IH+LIESE
Sbjct: 124 DIEGIAENGRNERKTENDDTTTDRSKFKKVEMPVFSGEDPDSWLFQAERYFQIHKLIESE 183

Query: 65  KMTISTISFEGPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTI 124
           KM +STISF+GPALNW+RSQEER+KF+ WAN+KERLL RFRSSR+G+L G+FLRI+Q T 
Sbjct: 184 KMLVSTISFDGPALNWYRSQEERDKFLSWANLKERLLIRFRSSRDGTLLGKFLRIKQETT 243

Query: 125 VDEYQNLFDKWVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
           V+EY+NLFDK V+PL+++ E VVE+TF++GL PWI+AE+ FC PKGL+ MM++A
Sbjct: 244 VEEYRNLFDKLVAPLSEVQEDVVEDTFMNGLLPWIRAEVAFCHPKGLSEMMQVA 297

BLAST of CSPI01G21520 vs. ExPASy TrEMBL
Match: A0A5D3BPU7 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00410 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.3e-58
Identity = 113/174 (64.94%), Postives = 145/174 (83.33%), Query Frame = 0

Query: 5   DLRGEDET-KNEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESE 64
           D+ G  E  +NE K  ND+   DR+KFKKVEMP+F+ +D DSWLF AERYF IH+LIESE
Sbjct: 124 DIEGIAENGRNERKTENDDTTTDRSKFKKVEMPVFSGEDPDSWLFQAERYFQIHKLIESE 183

Query: 65  KMTISTISFEGPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTI 124
           KM +STISF+GPALNW+RSQEER+KF+ WAN+KERLL RFRSSR+G+L G+FLRI+Q T 
Sbjct: 184 KMLVSTISFDGPALNWYRSQEERDKFLSWANLKERLLIRFRSSRDGTLLGKFLRIKQETT 243

Query: 125 VDEYQNLFDKWVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
           V+EY+NLFDK V+PL+++ E VVE+TF++GL PWI+AE+ FC  KGL+ MM++A
Sbjct: 244 VEEYRNLFDKLVAPLSEVQEDVVEDTFMNGLLPWIRAEVAFCHRKGLSEMMQVA 297

BLAST of CSPI01G21520 vs. ExPASy TrEMBL
Match: A0A5D3BEL2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00340 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57
Identity = 111/167 (66.47%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 11  ETKNEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESEKMTISTI 70
           E  N +K   DE  NDR+KFKKVEMP+F  +D +SWLF AERYF IH+L ESEKM +STI
Sbjct: 98  EEINTKKNEPDENSNDRSKFKKVEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLVSTI 157

Query: 71  SFEGPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTIVDEYQNL 130
            F+GPALNW+R+QEEREKFV W N+KERLL RF+S+REG+ +GRFLRIQQ T V+EY+NL
Sbjct: 158 CFDGPALNWYRAQEEREKFVSWTNLKERLLIRFQSTREGTAFGRFLRIQQETTVEEYRNL 217

Query: 131 FDKWVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
           FDK V+PL+D+ ++VVEETF+SGL PWI+AE+  C PKGLA MM+ A
Sbjct: 218 FDKLVAPLSDVEDRVVEETFMSGLFPWIRAEVILCRPKGLAEMMRTA 264

BLAST of CSPI01G21520 vs. ExPASy TrEMBL
Match: A0A5D3DC20 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00900 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57
Identity = 111/167 (66.47%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 11  ETKNEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESEKMTISTI 70
           E  N +K   DE  NDR+KFKKVEMP+F  +D +SWLF AERYF IH+L ESEKM +STI
Sbjct: 98  EEINTKKNEPDENSNDRSKFKKVEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLVSTI 157

Query: 71  SFEGPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTIVDEYQNL 130
            F+GPALNW+R+QEEREKFV W N+KERLL RF+S+REG+ +GRFLRIQQ T V+EY+NL
Sbjct: 158 CFDGPALNWYRAQEEREKFVSWTNLKERLLIRFQSTREGTAFGRFLRIQQETTVEEYRNL 217

Query: 131 FDKWVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
           FDK V+PL+D+ ++VVEETF+SGL PWI+AE+  C PKGLA MM+ A
Sbjct: 218 FDKLVAPLSDVEDRVVEETFMSGLFPWIRAEVILCRPKGLAEMMRTA 264

BLAST of CSPI01G21520 vs. NCBI nr
Match: KAA0036018.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 2.7e-59
Identity = 111/164 (67.68%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 14  NEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESEKMTISTISFE 73
           NE +K  +E  NDR+KFKKVEMP+FN +D D+WLF A+RYF IHRL +SEKMTI+TISFE
Sbjct: 30  NENEKNGEEKNNDRSKFKKVEMPVFNGEDPDAWLFRADRYFQIHRLTDSEKMTIATISFE 89

Query: 74  GPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTIVDEYQNLFDK 133
           GPALNW+R+QEER+KF DWAN+KERLL RFRSSREGS+Y +FLRIQQ + V+EYQN FD+
Sbjct: 90  GPALNWYRAQEERDKFKDWANLKERLLVRFRSSREGSIYLQFLRIQQESSVEEYQNKFDR 149

Query: 134 WVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
            ++P++DLP++V+EETF+ GL PWI+AE++FC P GLA MM +A
Sbjct: 150 LMAPVSDLPDRVIEETFMGGLFPWIKAEVEFCRPTGLAEMMLLA 193

BLAST of CSPI01G21520 vs. NCBI nr
Match: KAA0062661.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-58
Identity = 114/174 (65.52%), Postives = 146/174 (83.91%), Query Frame = 0

Query: 5   DLRGEDET-KNEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESE 64
           D+ G  E  +NE K  ND+   DR+KFKKVEMP+F+ +D DSWLF AERYF IH+LIESE
Sbjct: 124 DIEGIAENGRNERKTENDDTTTDRSKFKKVEMPVFSGEDPDSWLFQAERYFQIHKLIESE 183

Query: 65  KMTISTISFEGPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTI 124
           KM +STISF+GPALNW+RSQEER+KF+ WAN+KERLL RFRSSR+G+L G+FLRI+Q T 
Sbjct: 184 KMLVSTISFDGPALNWYRSQEERDKFLSWANLKERLLIRFRSSRDGTLLGKFLRIKQETT 243

Query: 125 VDEYQNLFDKWVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
           V+EY+NLFDK V+PL+++ E VVE+TF++GL PWI+AE+ FC PKGL+ MM++A
Sbjct: 244 VEEYRNLFDKLVAPLSEVQEDVVEDTFMNGLLPWIRAEVAFCHPKGLSEMMQVA 297

BLAST of CSPI01G21520 vs. NCBI nr
Match: TYK01195.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-57
Identity = 113/174 (64.94%), Postives = 145/174 (83.33%), Query Frame = 0

Query: 5   DLRGEDET-KNEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESE 64
           D+ G  E  +NE K  ND+   DR+KFKKVEMP+F+ +D DSWLF AERYF IH+LIESE
Sbjct: 124 DIEGIAENGRNERKTENDDTTTDRSKFKKVEMPVFSGEDPDSWLFQAERYFQIHKLIESE 183

Query: 65  KMTISTISFEGPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTI 124
           KM +STISF+GPALNW+RSQEER+KF+ WAN+KERLL RFRSSR+G+L G+FLRI+Q T 
Sbjct: 184 KMLVSTISFDGPALNWYRSQEERDKFLSWANLKERLLIRFRSSRDGTLLGKFLRIKQETT 243

Query: 125 VDEYQNLFDKWVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
           V+EY+NLFDK V+PL+++ E VVE+TF++GL PWI+AE+ FC  KGL+ MM++A
Sbjct: 244 VEEYRNLFDKLVAPLSEVQEDVVEDTFMNGLLPWIRAEVAFCHRKGLSEMMQVA 297

BLAST of CSPI01G21520 vs. NCBI nr
Match: TYJ96875.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-57
Identity = 111/167 (66.47%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 11  ETKNEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESEKMTISTI 70
           E  N +K   DE  NDR+KFKKVEMP+F  +D +SWLF AERYF IH+L ESEKM +STI
Sbjct: 98  EEINTKKNEPDENSNDRSKFKKVEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLVSTI 157

Query: 71  SFEGPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTIVDEYQNL 130
            F+GPALNW+R+QEEREKFV W N+KERLL RF+S+REG+ +GRFLRIQQ T V+EY+NL
Sbjct: 158 CFDGPALNWYRAQEEREKFVSWTNLKERLLIRFQSTREGTAFGRFLRIQQETTVEEYRNL 217

Query: 131 FDKWVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
           FDK V+PL+D+ ++VVEETF+SGL PWI+AE+  C PKGLA MM+ A
Sbjct: 218 FDKLVAPLSDVEDRVVEETFMSGLFPWIRAEVILCRPKGLAEMMRTA 264

BLAST of CSPI01G21520 vs. NCBI nr
Match: TYK21115.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-57
Identity = 111/167 (66.47%), Postives = 137/167 (82.04%), Query Frame = 0

Query: 11  ETKNEEKKPNDEGKNDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESEKMTISTI 70
           E  N +K   DE  NDR+KFKKVEMP+F  +D +SWLF AERYF IH+L ESEKM +STI
Sbjct: 98  EEINTKKNEPDENSNDRSKFKKVEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLVSTI 157

Query: 71  SFEGPALNWFRSQEEREKFVDWANMKERLLERFRSSREGSLYGRFLRIQQTTIVDEYQNL 130
            F+GPALNW+R+QEEREKFV W N+KERLL RF+S+REG+ +GRFLRIQQ T V+EY+NL
Sbjct: 158 CFDGPALNWYRAQEEREKFVSWTNLKERLLIRFQSTREGTAFGRFLRIQQETTVEEYRNL 217

Query: 131 FDKWVSPLTDLPEKVVEETFVSGLKPWIQAEMDFCEPKGLAHMMKIA 178
           FDK V+PL+D+ ++VVEETF+SGL PWI+AE+  C PKGLA MM+ A
Sbjct: 218 FDKLVAPLSDVEDRVVEETFMSGLFPWIRAEVILCRPKGLAEMMRTA 264

BLAST of CSPI01G21520 vs. TAIR 10
Match: AT1G67020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; Has 72 Blast hits to 72 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 9.5e-10
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 25  NDRNKFKKVEMPIFNRDDLDSWLFLAERYFHIHRLIESEKMTISTISFEGPALNWFRSQE 84
           N  +  +++EMP+F+   +  W    ER+F + R  +S+K+ +  +S EG AL WF  + 
Sbjct: 102 NRSSLIRRIEMPVFDGSGVYEWFSKVERFFRVGRYQDSDKLDLVALSLEGVALKWFLREM 161

Query: 85  EREKFVDWANMKERLLERF 104
              +F DW + ++RLL RF
Sbjct: 162 STLEFRDWNSFEQRLLARF 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SZK81.3e-5967.68Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7VAG86.6e-5965.52Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BPU77.3e-5864.94Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BEL21.2e-5766.47Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DC201.2e-5766.47Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
KAA0036018.12.7e-5967.68transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
KAA0062661.11.4e-5865.52Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK01195.11.5e-5764.94Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYJ96875.12.6e-5766.47Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gyp... [more]
TYK21115.12.6e-5766.47transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT1G67020.19.5e-1034.18unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 69..156
e-value: 1.9E-10
score: 40.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 29..173
NoneNo IPR availablePANTHERPTHR34482:SF20SUBFAMILY NOT NAMEDcoord: 29..173

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G21520.1CSPI01G21520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity