CSPI01G21440 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G21440
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L18a-like protein
Location	Chr1: 17047688 .. 17051224 (+)
RNA-Seq Expression	CSPI01G21440
Synteny	CSPI01G21440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTACGCCCGAGCTGAGTACAAACTGCCAGCTGTACGACTTCAATTCACCAAAATCAGGAAACACCACCGCCTTATTAGAAACCGGACACACCCATTCTCCATTCCGCCAAGCTCCGTTCACCGTCGCTCCCAACTTTTCCGGTGAAATCGCAGAAGAAGATAACAGTGACGACGAGACCTTCGCCGTCGTCTTGATATTCAAGAAACCTTCTCTGATTCTTCTTCTGCAAACAATATGAGTGGCGACGGGAAAAGCAACGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCAGCCGCAGCCCCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCAACCCGTTGTTTCTGGTCATCAGCCATGCTACCATGGACATCTGGGTTACCAAGCCGTTCCTGGTAAATAGCTACCCTCGTTGGTGTTTTTTTTTTCATCATGTTCGTGGATTTGGATGATTTTGTTATGTATGAATTCTGGCAAATGATGACGAATTTGGAATCTACAAATCAATATCGTGGTTCCTTCTAGGAGTTTGTGCAGAATTTTCGCTCAAATATTATTGTTTAATTGATTATGAATTGTTTGCTTTGTTTAGGGATTGAGTTTTATGGTGTTTCGTGTGGTCTTTGATAATGATCGTGATTATTTTTCTTTGTTACTTCTCTGCACATATTGGTATCCGTTGGTTTGATAATTATTAAATGGGTCTATGATGCTCATTGTGGTTTATAATTGATTTTCTGTATCTGTTGTTTCGACTGTTATTGATTCACCAGTATGAATGTGTGAGTAATATCCCAATGTTTTTTTTTAATATCACCCCTAATAATGTTTAGGGCCGTGAGAAATAAGGTTAAAAATTATGTTAAGGATTAATAGGGGATGCTTTCTAGCCTACCAGTTGGGACTGTTGACATTATTTACCTGAAGAAGTAACGTAGTGCAGGTGAAATCGAATGCTTCAGGAGCTAACTTATTGAAATAATGACGAACTAGCCAGCTATAGGATATTATTTTGATTCTGAGTTTGTATCTGGCATGGGGACGTAACTATTTCCTTAAAAACCAGGAACATTCTCTTTTAGCATCAGCATGTGGATGTGCAAGAGAGGAGGAGATATATTGAGAATGCTACCCTCTTTTTATGGTGATTGCGGAAAGATATTTTCTGGTAGACTTAAATTTTAATAGGAGAACAATTGCTGAACTCTTTACTTCGAAATTACCTGTATCATCTGGGTTGCAAAACCTGGGTACTCTATTAAATATCTAAAACCTCTTCGAACTTAATTGGTCTAGAGGTCTTTTTCATTCCACATCTCAATTCTTACGTATTATAGATAGCTCATAGCATGAAATTCTTCTGAAGAATTTGGAAAACAATGGTCTCTTGAGCATGCACAATCATTTTTTTCTGTGTAGAAGGCATCTAGGAAAGTGTTTTAGGAGATAGAGAAGAGTCAGAGATTTCTGAAGAAAGTCTATTCTTGGATGTTGGCTTGAATCTAATTAATTGGCAGACAATGTCTTCAGCTGGAGGATAGTCTGGATGTTACTAAGCCGATTAATCGGGATGTATTGTTAAAGAGAACGGAGAAGTTTTTTTTAATTGAGGAAATAATTGTGGGAAAATTGTGTTTTTATTTCTTTTTTATGTAGTGACTTCCATACGGTATTCTGGAACTATTCTCTTTACACGGTTGGTGCCAATGGTTGGTTCTGACTATTTAATTTTTTTTGCCTTTTGCTCATCACCCAATGAGATTGCAACAAAGATGTATCAAGTCCTTTTTTAAAGGACTGCTTAGAACTTGTTTATAATGAAAAAAAATCATCGCGATATTCCTTTGAAGACTGTAGTTGTGCAATGCTACCAGTGTACAAATTGGCACATCAAATTTTATCTTTGGTACAACTGACTACTGAGATTAACAACTCTTTTCATCTTAAAAGTGAAAGGGGTATCACTCACCAGATGTTTCTGTCAACATGTCTTGCTATTTAGAAGTAGCACCTAGCATCTTGCCCAGTGCAAATATTCACCAAATCAACGACGATAAGATTCTGTAATTCACTTATCCATCATCCTACTTAATGCTTTTATTTCTTATAGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTAAGTTATATTTGTGAGACCCCATTTTTCTGCACTCATTCCCAGCATGCCGATGATTAAGAAAAATAATTGTTTTCCAGGTTTATGATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTGTAAGTATCTACTATATGAATATATTACCTATCCTCAGAAATGAGTTCTCACCTATCTCAATAATAATAGTGATGACATTACTCTAAGTGATACTCAAAATGAGGAAGATTTGGGATGTTTTAAGACATTCTCTGAAGTATTAGGTTCAAGGAAAATTTATCGACTGTGTTTTATAGAGCTGAGCCAAGAATTATTGTAGGTGGGTAATGAGTACATAAGTGAGGAGTTGAGCACCCAACTCTTTGTTTCAAATTAGTAAGGGAAAACATCAATTTATACCCTTAATCTTTTGAGTTTGTATCAATTTAAACCATAGACTCATATTTATATCAATTTAAACTCGGTAGTTTTGCGGTGGTATCAATTTACGCCCTCCATAATATTTCGTTTGGAAAAGTTGTGTTACTAAAACTTATAATTGTATCAATTAGAATGCCTACACTCTTATAAATGAATCCATAATTTTCTTTTAAAATCATTTATTGACAATTTTGTTAAACCGTATAAGACAATTTTTAGAATTAAAGCATAGTGAATGGATGATTTTCGTAAGGAAGAGTCTAAATTGATTGACTTTTGAAAATTTAGAAGTTTGATTATCTCAAATTATAAGTTTCACATAATACTGTTTTCAGAAGTTCAAGTCTCAATTTGATTGCCTGCTGTTTCAATTTCTTGGACTTGACTGTGTTGTATAGGATGTTATAATTTCCATCTACTCATTTTGAAACTGTGCTTTATTTTTGCTTTCTCAGTCAGTTCTTGCTGTCATAGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGAAGGAAACATATGAAGAACGGTCTGGTGTGATCGATACCGATGTCACCCTCCCCCTGTATTGACAAACAACTGGTGTGATACTGTAATTAGCTTTTGAATTGTTATTCTTTCCATCTATATTTATCAACTTATTGGTTTCCTTTACCATATAGATATCTGAATCTTCCTGACTTGCCAAAATTTGAAATGAAATGTTAATAGATTGAAAGACAAAATTATTAGCTTTATTGGAAGGGTTTTTCTTTTTTATTATAATTATAAATTCTGG

mRNA sequence

CAATTACGCCCGAGCTGAGTACAAACTGCCAGCTGTACGACTTCAATTCACCAAAATCAGGAAACACCACCGCCTTATTAGAAACCGGACACACCCATTCTCCATTCCGCCAAGCTCCGTTCACCGTCGCTCCCAACTTTTCCGGTGAAATCGCAGAAGAAGATAACAGTGACGACGAGACCTTCGCCGTCGTCTTGATATTCAAGAAACCTTCTCTGATTCTTCTTCTGCAAACAATATGAGTGGCGACGGGAAAAGCAACGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCAGCCGCAGCCCCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCAACCCGTTGTTTCTGGTCATCAGCCATGCTACCATGGACATCTGGGTTACCAAGCCGTTCCTGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTTCAGTTCTTGCTGTCATAGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGAAGGAAACATATGAAGAACGGTCTGGTGTGATCGATACCGATGTCACCCTCCCCCTGTATTGACAAACAACTGGTGTGATACTGTAATTAGCTTTTGAATTGTTATTCTTTCCATCTATATTTATCAACTTATTGGTTTCCTTTACCATATAGATATCTGAATCTTCCTGACTTGCCAAAATTTGAAATGAAATGTTAATAGATTGAAAGACAAAATTATTAGCTTTATTGGAAGGGTTTTTCTTTTTTATTATAATTATAAATTCTGG

Coding sequence (CDS)

ATGAGTGGCGACGGGAAAAGCAACGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCAGCCGCAGCCCCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCAACCCGTTGTTTCTGGTCATCAGCCATGCTACCATGGACATCTGGGTTACCAAGCCGTTCCTGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTTCAGTTCTTGCTGTCATAGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGA

Protein sequence

MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW*

Homology

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BLAST of CSPI01G21440 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 139.8 bits (351), Expect = 2.7e-32
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 17  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQ 76
           QY+YGTFQGVAN+ T  P PQ       +  FP    Q  + GH    +   G+  V V 
Sbjct: 18  QYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQN-LQGHGGGVNYAQGFPVV-VP 77

Query: 77  GYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVA 136
            Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVA
Sbjct: 78  DYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVA 137

Query: 137 CAIASVLAVIAITFGITNGVEPW 160
           C+IASV+ +IA+  G+T  +  W
Sbjct: 138 CSIASVVYLIAVMLGMTGDINIW 158

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BLAST of CSPI01G21440 vs. ExPASy TrEMBL
Match: A0A0A0M051 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.2e-89
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

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BLAST of CSPI01G21440 vs. ExPASy TrEMBL
Match: A0A1S3B9D9 (60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 7.9e-88
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKS+VVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVA PVVSGH
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

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BLAST of CSPI01G21440 vs. ExPASy TrEMBL
Match: A0A6J1CGC1 (60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111010965 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.9e-74
Identity = 135/159 (84.91%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGK++ V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVA P VSG 
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI
Sbjct: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVAC IASVLA++AITFG+T G E W
Sbjct: 121 VLFVRVDYREKPGYVACVIASVLALVAITFGVTKGAESW 159

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BLAST of CSPI01G21440 vs. ExPASy TrEMBL
Match: A0A6J1EHH7 (60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC111434348 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.1e-72
Identity = 133/159 (83.65%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKS+ VFGDP SQYHYGTFQGVANYY+S P+PQPQP PQSVVGFP  VA P     
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPEPQPQPHPQSVVGFPPQVAPP----R 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            PCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGY+ACAIASVLAV+AITFG++ GVE W
Sbjct: 121 VLFVRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

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BLAST of CSPI01G21440 vs. ExPASy TrEMBL
Match: A0A6J1KIR0 (60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495603 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 133/159 (83.65%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MS DGKS+ VFGDP SQYHYGTFQGVANYY+S PQPQPQP PQSVVGFP  VA P     
Sbjct: 1   MSCDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPQPQPQPHPQSVVGFPPQVAPP----R 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            PCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGY+ACAIASVLAV+AITFG++ GVE W
Sbjct: 121 VLFVRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

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BLAST of CSPI01G21440 vs. NCBI nr
Match: XP_004147407.1 (60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetical protein Csa_019751 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 8.7e-89
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

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BLAST of CSPI01G21440 vs. NCBI nr
Match: XP_008444018.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 332.8 bits (852), Expect = 1.6e-87
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKS+VVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVA PVVSGH
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
           QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

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BLAST of CSPI01G21440 vs. NCBI nr
Match: XP_038895475.1 (60S ribosomal protein L18a-like protein [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 5.5e-75
Identity = 140/159 (88.05%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKS+ VFGDP SQYHYGTFQGVANYY+S     PQ QPQS VGFPQPV    VSGH
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSS----APQAQPQSFVGFPQPVTPSGVSGH 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            PCYHGHLGYQAVPVQGYAI+E RPF+EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI
Sbjct: 61  HPCYHGHLGYQAVPVQGYAIIERRPFEEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 155

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BLAST of CSPI01G21440 vs. NCBI nr
Match: XP_022140257.1 (60S ribosomal protein L18a-like protein [Momordica charantia])

HSP 1 Score: 287.7 bits (735), Expect = 6.0e-74
Identity = 135/159 (84.91%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGK++ V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVA P VSG 
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGWFLF+IGFFLGGIPWYVGAFI
Sbjct: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGYVAC IASVLA++AITFG+T G E W
Sbjct: 121 VLFVRVDYREKPGYVACVIASVLALVAITFGVTKGAESW 159

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BLAST of CSPI01G21440 vs. NCBI nr
Match: XP_022927552.1 (60S ribosomal protein L18a-like protein [Cucurbita moschata] >KAG6583922.1 60S ribosomal protein L18a-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 281.6 bits (719), Expect = 4.3e-72
Identity = 133/159 (83.65%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60
           MSGDGKS+ VFGDP SQYHYGTFQGVANYY+S P+PQPQP PQSVVGFP  VA P     
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPEPQPQPHPQSVVGFPPQVAPP----R 60

Query: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120
            PCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF+
Sbjct: 61  HPCYHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFV 120

Query: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           VLFVRVDYREKPGY+ACAIASVLAV+AITFG++ GVE W
Sbjct: 121 VLFVRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

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BLAST of CSPI01G21440 vs. TAIR 10
Match: AT1G17080.1 (Ribosomal protein L18ae family )

HSP 1 Score: 162.5 bits (410), Expect = 2.7e-40
Identity = 85/158 (53.80%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 4   DGKSNVVFGDPHSQYH-YGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQP 63
           + KS     +  +Q+H YGTFQGV+NY   PP     P    V GFPQP A P V     
Sbjct: 6   EDKSKGFASEEGNQHHQYGTFQGVSNY---PPPQNSAP----VTGFPQPSAPPGVYDSGA 65

Query: 64  CYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVL 123
            Y+ H GYQ VPV G  + EGRP ++ RLPCCGIG+GWFLF++GFFLG IPWYVG FI++
Sbjct: 66  PYYAH-GYQTVPVHG-GVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMM 125

Query: 124 F-VRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 160
           F  R+DYREKPGY+AC IA++LA IA+  G++ G + W
Sbjct: 126 FGRRIDYREKPGYIACTIAAILATIAVILGVSKGADDW 154

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BLAST of CSPI01G21440 vs. TAIR 10
Match: AT1G53560.1 (Ribosomal protein L18ae family )

HSP 1 Score: 141.0 bits (354), Expect = 8.5e-34
Identity = 71/140 (50.71%), Postives = 88/140 (62.86%), Query Frame = 0


Query: 20  YGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYA 79
           YGTFQGV  Y   PP     P    V+G PQP   P    H    H ++  +   V GY 
Sbjct: 16  YGTFQGVPTY--PPPSYPHPPSHHPVIGIPQPSPPPGSPHHDISVHQYI-QEHQTVAGYP 75

Query: 80  ILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAI 139
           + +GRP ++ RLPCCG+G+GWFLF+IGF LG IPWYVG FI++  R+D REKPGYVAC I
Sbjct: 76  VSQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTI 135

Query: 140 ASVLAVIAITFGITNGVEPW 160
           A+V+A I I FG+  G   W
Sbjct: 136 AAVVATITIVFGVMGGRGVW 152

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BLAST of CSPI01G21440 vs. TAIR 10
Match: AT1G29970.1 (60S ribosomal protein L18A-1 )

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 0


Query: 17  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQ 76
           QY+YGTFQGVAN+ T  P PQ       +  FP    Q  + GH    +   G+  V V 
Sbjct: 18  QYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQN-LQGHGGGVNYAQGFPVV-VP 77

Query: 77  GYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVA 136
            Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVA
Sbjct: 78  DYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVA 137

Query: 137 CAIASVLAVIAITFGITNGVEPW 160
           C+IASV+ +IA+  G+T  +  W
Sbjct: 138 CSIASVVYLIAVMLGMTGDINIW 158

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BLAST of CSPI01G21440 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 66/124 (53.23%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 17  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQ 76
           QY+YGTFQGVAN+ T  P PQ       +  FP    Q  + GH    +   G+  V V 
Sbjct: 18  QYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQN-LQGHGGGVNYAQGFPVV-VP 77

Query: 77  GYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVA 136
            Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+GAFIVL   VD+REK GYVA
Sbjct: 78  DYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVA 137

Query: 137 CAIA 141
           C+IA
Sbjct: 138 CSIA 139

[Close]

BLAST of CSPI01G21440 vs. TAIR 10
Match: AT1G29970.3 (60S ribosomal protein L18A-1 )

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-27
Identity = 73/185 (39.46%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 17  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQ 76
           QY+YGTFQGVAN+ T  P PQ       +  FP    Q  + GH    +   G+  V V 
Sbjct: 18  QYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQN-LQGHGGGVNYAQGFPVV-VP 77

Query: 77  GYAILEGRPFQEARLPCCGIGMGWFL---------------------------------- 136
            Y ++E RP  E  LPCCG+GMGWFL                                  
Sbjct: 78  DYTVVEVRPMIEHELPCCGLGMGWFLSKLQKLRFMVVGNSSLLSWNLFVSSEILDELIAS 137

Query: 137 --------FMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITN 160
                   F++GF  GGIPWY+GAFIVL   VD+REK GYVAC+IASV+ +IA+  G+T 
Sbjct: 138 WNQYKKSVFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGMTG 197

The following BLAST results are available for this feature:

BLAST of CSPI01G21440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S1	2.7e-32	51.05	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of CSPI01G21440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M051	4.2e-89	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1	[more]
A0A1S3B9D9	7.9e-88	98.74	60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 ...	[more]
A0A6J1CGC1	2.9e-74	84.91	60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1EHH7	2.1e-72	83.65	60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KIR0	1.0e-71	83.65	60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495...	[more]

BLAST of CSPI01G21440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147407.1	8.7e-89	100.00	60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetic...	[more]
XP_008444018.1	1.6e-87	98.74	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
XP_038895475.1	5.5e-75	88.05	60S ribosomal protein L18a-like protein [Benincasa hispida]	[more]
XP_022140257.1	6.0e-74	84.91	60S ribosomal protein L18a-like protein [Momordica charantia]	[more]
XP_022927552.1	4.3e-72	83.65	60S ribosomal protein L18a-like protein [Cucurbita moschata] >KAG6583922.1 60S r...	[more]

BLAST of CSPI01G21440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17080.1	2.7e-40	53.80	Ribosomal protein L18ae family	[more]
AT1G53560.1	8.5e-34	50.71	Ribosomal protein L18ae family	[more]
AT1G29970.1	1.9e-33	51.05	60S ribosomal protein L18A-1	[more]
AT1G29970.2	1.4e-28	53.23	60S ribosomal protein L18A-1	[more]
AT1G29970.3	2.6e-27	39.46	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044804	AT1G29970-like	PANTHER	PTHR46631	60S RIBOSOMAL PROTEIN L18A-LIKE	coord: 1..159
None	No IPR available	PANTHER	PTHR46631:SF20	60S RIBOSOMAL PROTEIN L18A-LIKE PROTEIN	coord: 1..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G21440.1	CSPI01G21440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome