CSPI01G20960 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G20960
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr1: 16518908 .. 16519414 (-)
RNA-Seq Expression	CSPI01G20960
Synteny	CSPI01G20960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATACTTGATTGAGTGCAGAACCTTGGAAGCCCACATAGCCGAGATAGAGCCAGAAGAGAGTAATAACATACCTGAGAGCATACTAACAGCCCTGAAACAGTATAATGACGTTTTCGATTGGCCCAAAGAATTACCTCCAAGAAGGGATATCGAACATCATATACACGTAAGGGGAGGGGCAGATCCGATGAATGTCAGGCCCTATCGGTATGCTTTTCAGCAGAAGGAGGAAATGGAAAAATTGGTGGACGAAATGCTAACCTCAGGAATTATCCGTCCCAGCACAAGCCCCTACTCAAGCCCCGTATTATTGGTCAAGAAGAAGGACGGAAGTTGGCGATTCTGCGTGGACTACAGGGCACTCAATAACATAACTATTCCAGATATGTTTCCTATCCCTGTTGTGGAAGAACTGTTCGACGAGCTAAATGGTGCAAATCTATTCTCCAAAATTGACTTGAAAGCGGGATATCATCAATTAGAATGTGCAGTCAAGATATAG

mRNA sequence

ATGGGATACTTGATTGAGTGCAGAACCTTGGAAGCCCACATAGCCGAGATAGAGCCAGAAGAGAGTAATAACATACCTGAGAGCATACTAACAGCCCTGAAACAGTATAATGACGTTTTCGATTGGCCCAAAGAATTACCTCCAAGAAGGGATATCGAACATCATATACACGTAAGGGGAGGGGCAGATCCGATGAATGTCAGGCCCTATCGGTATGCTTTTCAGCAGAAGGAGGAAATGGAAAAATTGGTGGACGAAATGCTAACCTCAGGAATTATCCGTCCCAGCACAAGCCCCTACTCAAGCCCCGTATTATTGGTCAAGAAGAAGGACGGAAGTTGGCGATTCTGCGTGGACTACAGGGCACTCAATAACATAACTATTCCAGATATGTTTCCTATCCCTGTTGTGGAAGAACTGTTCGACGAGCTAAATGGTGCAAATCTATTCTCCAAAATTGACTTGAAAGCGGGATATCATCAATTAGAATGTGCAGTCAAGATATAG

Coding sequence (CDS)

ATGGGATACTTGATTGAGTGCAGAACCTTGGAAGCCCACATAGCCGAGATAGAGCCAGAAGAGAGTAATAACATACCTGAGAGCATACTAACAGCCCTGAAACAGTATAATGACGTTTTCGATTGGCCCAAAGAATTACCTCCAAGAAGGGATATCGAACATCATATACACGTAAGGGGAGGGGCAGATCCGATGAATGTCAGGCCCTATCGGTATGCTTTTCAGCAGAAGGAGGAAATGGAAAAATTGGTGGACGAAATGCTAACCTCAGGAATTATCCGTCCCAGCACAAGCCCCTACTCAAGCCCCGTATTATTGGTCAAGAAGAAGGACGGAAGTTGGCGATTCTGCGTGGACTACAGGGCACTCAATAACATAACTATTCCAGATATGTTTCCTATCCCTGTTGTGGAAGAACTGTTCGACGAGCTAAATGGTGCAAATCTATTCTCCAAAATTGACTTGAAAGCGGGATATCATCAATTAGAATGTGCAGTCAAGATATAG

Protein sequence

MGYLIECRTLEAHIAEIEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQLECAVKI*

Homology

[Close]

BLAST of CSPI01G20960 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-25
Identity = 57/160 (35.62%), Postives = 93/160 (58.13%), Query Frame = 0


Query: 14  IAEIEPEESNNIPESILTAL-----KQYNDVFDWPKELPPRR------DIEHHIHVRGGA 73
           I  +EP  +++  +     L     ++Y ++     +LPPR        ++H I ++ GA
Sbjct: 537 IQSVEPNATDHSNKDTFCTLPVWLQQKYREII--RNDLPPRPADINNIPVKHDIEIKPGA 596

Query: 74  DPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRA 133
               ++PY    + ++E+ K+V ++L +  I PS SP SSPV+LV KKDG++R CVDYR 
Sbjct: 597 RLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRT 656

Query: 134 LNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           LN  TI D FP+P ++ L   +  A +F+ +DL +GYHQ+
Sbjct: 657 LNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 694

[Close]

BLAST of CSPI01G20960 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-25
Identity = 57/160 (35.62%), Postives = 93/160 (58.13%), Query Frame = 0


Query: 14  IAEIEPEESNNIPESILTAL-----KQYNDVFDWPKELPPRR------DIEHHIHVRGGA 73
           I  +EP  +++  +     L     ++Y ++     +LPPR        ++H I ++ GA
Sbjct: 563 IQSVEPNATDHSNKDTFCTLPVWLQQKYREII--RNDLPPRPADINNIPVKHDIEIKPGA 622

Query: 74  DPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCVDYRA 133
               ++PY    + ++E+ K+V ++L +  I PS SP SSPV+LV KKDG++R CVDYR 
Sbjct: 623 RLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRT 682

Query: 134 LNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           LN  TI D FP+P ++ L   +  A +F+ +DL +GYHQ+
Sbjct: 683 LNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQI 720

[Close]

BLAST of CSPI01G20960 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.5e-20
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 63  DPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKK-----DGSWRFC 122
           DP+  + Y Y    + E+E+ +DE+L  GIIRPS SPY+SP+ +V KK     +  +R  
Sbjct: 122 DPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMV 181

Query: 123 VDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           VD++ LN +TIPD +PIP +      L  A  F+ +DL +G+HQ+
Sbjct: 182 VDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQI 226

[Close]

BLAST of CSPI01G20960 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.9e-19
Identity = 55/160 (34.38%), Postives = 90/160 (56.25%), Query Frame = 0


Query: 10  LEAHIAEIEPEESNNIPESILTALKQYNDV-FDWPKELPPRRDIEHHIHVRGGADPMNVR 69
           LE+ +  +E   +N   + +   L++Y+D+ +    +L      +H I+ +      +  
Sbjct: 155 LESDLYRLE-HLNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKY 214

Query: 70  PYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLV-KKKDGS----WRFCVDYRAL 129
            Y  A++Q  E+E  + +ML  GIIR S SPY+SP+ +V KK+D S    +R  +DYR L
Sbjct: 215 SYPQAYEQ--EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKL 274

Query: 130 NNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQLE 164
           N IT+ D  PIP ++E+  +L   N F+ IDL  G+HQ+E
Sbjct: 275 NEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIE 311

[Close]

BLAST of CSPI01G20960 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.7e-18
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 64  PMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKD-----GSWRFCV 123
           P+  + Y  A   + E+E  V EML  G+IR S SPY+SP  +V KK        +R  +
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 124 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQLE 164
           DYR LN ITIPD +PIP ++E+  +L     F+ IDL  G+HQ+E
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIE 310

[Close]

BLAST of CSPI01G20960 vs. ExPASy TrEMBL
Match: A0A5D3D5G0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00880 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.3e-66
Identity = 118/164 (71.95%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYLIECR++   IAE   +  EE   I E +L  L Q+ND+F+WP++LPPRR IEH IH+
Sbjct: 447 GYLIECRSMGIEIAEPITLHKEEKGEIEEKLLPILDQFNDIFEWPEKLPPRRSIEHQIHL 506

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS SPYSSPVLLVKKKDGSWRFCV
Sbjct: 507 KEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCV 566

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           DYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Sbjct: 567 DYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 610

[Close]

BLAST of CSPI01G20960 vs. ExPASy TrEMBL
Match: A0A5D3BEL2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00340 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.6e-65
Identity = 117/164 (71.34%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH+
Sbjct: 568 GYLIECRSMGIEIAEPITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHL 627

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS SPYSSPVLLVKKKDGSWRFCV
Sbjct: 628 KEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCV 687

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           DYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Sbjct: 688 DYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

[Close]

BLAST of CSPI01G20960 vs. ExPASy TrEMBL
Match: A0A5A7V5H5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2406G00250 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.6e-65
Identity = 117/164 (71.34%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH+
Sbjct: 568 GYLIECRSMGIEIAEPITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHL 627

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS SPYSSPVLLVKKKDGSWRFCV
Sbjct: 628 KEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCV 687

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           DYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Sbjct: 688 DYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

[Close]

BLAST of CSPI01G20960 vs. ExPASy TrEMBL
Match: A0A5A7VJA0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001740 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.6e-65
Identity = 117/164 (71.34%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH+
Sbjct: 568 GYLIECRSMGIEIAEPITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHL 627

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS SPYSSPVLLVKKKDGSWRFCV
Sbjct: 628 KEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCV 687

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           DYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Sbjct: 688 DYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

[Close]

BLAST of CSPI01G20960 vs. ExPASy TrEMBL
Match: A0A5A7T6Q1 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001160 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.3e-64
Identity = 117/164 (71.34%), Postives = 137/164 (83.54%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAEIEP---EESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYL+ECR LEA +  +E    EE+NN PE +   L +YNDVF+W + LPPRR IEHHIH+
Sbjct: 101 GYLVECRALEAGVLLLEETTVEENNNAPEEVQKILAKYNDVFEWSETLPPRRAIEHHIHL 160

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPY YAFQQK EMEKLVDEM++SGII+P  SPYSS VLLVKK DGSWRFC+
Sbjct: 161 KTGTEPVNVRPYWYAFQQKAEMEKLVDEMMSSGIIQPDNSPYSSLVLLVKKTDGSWRFCM 220

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           +YRALNN T+PD FPIPV+EELFDELNGANLFSKIDLKAGYHQ+
Sbjct: 221 NYRALNNATVPDKFPIPVIEELFDELNGANLFSKIDLKAGYHQI 264

[Close]

BLAST of CSPI01G20960 vs. NCBI nr
Match: KAA0057179.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18781.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 118/164 (71.95%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYLIECR++   IAE   +  EE   I E +L  L Q+ND+F+WP++LPPRR IEH IH+
Sbjct: 447 GYLIECRSMGIEIAEPITLHKEEKGEIEEKLLPILDQFNDIFEWPEKLPPRRSIEHQIHL 506

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS SPYSSPVLLVKKKDGSWRFCV
Sbjct: 507 KEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCV 566

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           DYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Sbjct: 567 DYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 610

[Close]

BLAST of CSPI01G20960 vs. NCBI nr
Match: TYJ96875.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 5.4e-65
Identity = 117/164 (71.34%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH+
Sbjct: 568 GYLIECRSMGIEIAEPITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHL 627

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS SPYSSPVLLVKKKDGSWRFCV
Sbjct: 628 KEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCV 687

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           DYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Sbjct: 688 DYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

[Close]

BLAST of CSPI01G20960 vs. NCBI nr
Match: KAA0062868.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 5.4e-65
Identity = 117/164 (71.34%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH+
Sbjct: 568 GYLIECRSMGIEIAEPITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHL 627

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS SPYSSPVLLVKKKDGSWRFCV
Sbjct: 628 KEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCV 687

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           DYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Sbjct: 688 DYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

[Close]

BLAST of CSPI01G20960 vs. NCBI nr
Match: KAA0068193.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 5.4e-65
Identity = 117/164 (71.34%), Postives = 138/164 (84.15%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH+
Sbjct: 568 GYLIECRSMGIEIAEPITLHKEEKGEIEEKLLPILDQFKDIFEWPEKLPPRRSIEHQIHL 627

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS SPYSSPVLLVKKKDGSWRFCV
Sbjct: 628 KEGTNPVNVRPYRYAYHQKEEMERLVNEMLASGIIRPSASPYSSPVLLVKKKDGSWRFCV 687

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           DYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Sbjct: 688 DYRALNNVTVPDKFPIPVVEELFDELGGASLFTKIDLKAGYHQI 731

[Close]

BLAST of CSPI01G20960 vs. NCBI nr
Match: KAA0037155.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK13918.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.7e-64
Identity = 117/164 (71.34%), Postives = 137/164 (83.54%), Query Frame = 0


Query: 2   GYLIECRTLEAHIAEIEP---EESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHV 61
           GYL+ECR LEA +  +E    EE+NN PE +   L +YNDVF+W + LPPRR IEHHIH+
Sbjct: 101 GYLVECRALEAGVLLLEETTVEENNNAPEEVQKILAKYNDVFEWSETLPPRRAIEHHIHL 160

Query: 62  RGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSWRFCV 121
           + G +P+NVRPY YAFQQK EMEKLVDEM++SGII+P  SPYSS VLLVKK DGSWRFC+
Sbjct: 161 KTGTEPVNVRPYWYAFQQKAEMEKLVDEMMSSGIIQPDNSPYSSLVLLVKKTDGSWRFCM 220

Query: 122 DYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL 163
           +YRALNN T+PD FPIPV+EELFDELNGANLFSKIDLKAGYHQ+
Sbjct: 221 NYRALNNATVPDKFPIPVIEELFDELNGANLFSKIDLKAGYHQI 264

[Close]

BLAST of CSPI01G20960 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 76  QKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSW 115
           ++  ++  + EML + II+PS SPYSSPVLLV+KKDG W
Sbjct: 41  RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of CSPI01G20960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.3e-25	35.63	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.3e-25	35.63	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	5.5e-20	40.95	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	7.9e-19	34.38	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	6.7e-18	42.86	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]

BLAST of CSPI01G20960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5G0	5.3e-66	71.95	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BEL2	2.6e-65	71.34	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V5H5	2.6e-65	71.34	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VJA0	2.6e-65	71.34	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T6Q1	1.3e-64	71.34	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001160...	[more]

BLAST of CSPI01G20960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057179.1	1.1e-65	71.95	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18781.1 Ty3/gyp...	[more]
TYJ96875.1	5.4e-65	71.34	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gyp...	[more]
KAA0062868.1	5.4e-65	71.34	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0068193.1	5.4e-65	71.34	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037155.1	2.7e-64	71.34	peroxidase 64 [Cucumis melo var. makuwa] >TYK13918.1 peroxidase 64 [Cucumis melo...	[more]

BLAST of CSPI01G20960 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	1.6e-06	56.41	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 132..159 e-value: 1.6E-44 score: 153.8
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 52..163 e-value: 1.6E-44 score: 153.8
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 21..162
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 21..162
None	No IPR available	CDD	cd01647	RT_LTR	coord: 91..163 e-value: 8.01233E-37 score: 123.474
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 33..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G20960.1	CSPI01G20960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006488	dolichol-linked oligosaccharide biosynthetic process
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity