CSPI01G19380 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G19380
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 14846040 .. 14846537 (+)
RNA-Seq Expression	CSPI01G19380
Synteny	CSPI01G19380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCGATCCGCCGGCGGAGACGAACTATGGTAATTTGTTCTAATCCGAGACATAAACAAAGACAAGGATAATCTTTATAAAAAAAAGTACCCCTAAGGGCCACCCACAATATACACATAAAAATAAATTAAAAGATCCGTTTTGTCGTTTTCTGGATTCTAATGGATAGTCCTCCGGACCATTAATCAGTCCTCTATTTTTTTCCATTAATCAGTTGCAGTCCTTCTATATATTCTTTGCATCTCTCCTTTTCATGCGCTTCTCAACTCATATTACATTGAGCCTCTTTCTATGGTCGTCCGGAGGCGCGAAGAACAAAAAGAAGGACGCAGATGTGCAAAGCAAAGAGCGGAAGACTAGAGAGGAACGCAACGATGAAATCCATATTAACCTGCCTCCTACGCTGAATATGGGGCACTTTGCTCCGTCCGAAGGCTCAAAGAATTTGAGGGACAGTCCTCCAGGTTGTCAAGGCTCAATGCAATATGAGTGA

mRNA sequence

ATGTCGTCCGATCCGCCGGCGGAGACGAACTATGGCGCGAAGAACAAAAAGAAGGACGCAGATGTGCAAAGCAAAGAGCGGAAGACTAGAGAGGAACGCAACGATGAAATCCATATTAACCTGCCTCCTACGCTGAATATGGGGCACTTTGCTCCGTCCGAAGGCTCAAAGAATTTGAGGGACAGTCCTCCAGGTTGTCAAGGCTCAATGCAATATGAGTGA

Coding sequence (CDS)

ATGTCGTCCGATCCGCCGGCGGAGACGAACTATGGCGCGAAGAACAAAAAGAAGGACGCAGATGTGCAAAGCAAAGAGCGGAAGACTAGAGAGGAACGCAACGATGAAATCCATATTAACCTGCCTCCTACGCTGAATATGGGGCACTTTGCTCCGTCCGAAGGCTCAAAGAATTTGAGGGACAGTCCTCCAGGTTGTCAAGGCTCAATGCAATATGAGTGA

Protein sequence

MSSDPPAETNYGAKNKKKDADVQSKERKTREERNDEIHINLPPTLNMGHFAPSEGSKNLRDSPPGCQGSMQYE*

Homology

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BLAST of CSPI01G19380 vs. NCBI nr
Match: KAE8653124.1 (hypothetical protein Csa_019994 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MSSDPPAETNYGAKNKKKDADVQSKERKTREERNDEIHINLPPTLNMGHFAPSEGSKNLR 60
          MSSDP AETNYGAKNKKKDADVQSKERKTREERNDEIHINLPP LNMGHFAPSEGSK+LR
Sbjct: 1  MSSDPQAETNYGAKNKKKDADVQSKERKTREERNDEIHINLPPMLNMGHFAPSEGSKDLR 60

Query: 61 DSPPGC 67
          DSPPGC
Sbjct: 61 DSPPGC 66

The following BLAST results are available for this feature:

BLAST of CSPI01G19380 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G19380 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G19380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653124.1	1.3e-26	95.45	hypothetical protein Csa_019994 [Cucumis sativus]	[more]

BLAST of CSPI01G19380 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G19380.1	CSPI01G19380.1	mRNA