CSPI01G18830 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G18830
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribonuclease H
Location	Chr1: 14243211 .. 14245150 (+)
RNA-Seq Expression	CSPI01G18830
Synteny	CSPI01G18830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTATAAAGTATATTTTTGAAAAGCCATCTCTGTCTGGAAGAATGGCTAAATGGAAAGTATTGCTATCCGAGTATGACATCATCTGTGTTACAAGAAAGACAGTAAAAGGAAGTGCAATTGCTGATTGTCTAGCTCATTTGTCAGTTGAAGACTATGAACCAATGAAATTTGAATTTTCAGATGAGGACGTCATGACAGTATCAGAGACACCGCAGGATACAGAAACATGGACGATGTTGTTTGATGGAGCCACAAATGAAGTAGGACATGGTGTGGGAGCTATTCTAACGTTTCCTGATGGAGGAACATATCCTCTAACTGCTAAGTTGTACTTTAATTGCACGAATAACATGGCGGAGTATGAAGCATGCAGTATGGGAGTTCAAATGGCCTATGACATGAAGATTAAGAAGTTACAAGTTTATGGAGATTCTCTCTTGGTAATACATCAACTCAATGGGGAGTAGGAAACCAGAGACTCTAAAATGATTCCATATAACAAGTACATTCGAGAATTGGCTCAAACGTTTGAGTCGATTACATTCAAGCATGTCCCACGTGAAAGTAATCAAATAGCAGATGTATTGGCTACTCTATCTGTCATGTTTAATGTGGCATAGAATGAGAAAATTCAGCCTATAAGAATTGAAAAGTGTGAAGCACCGATGTATTGCATGAACGATGAGCAAGAGTTTGACGAAAAACCATGGTACCACGACATTAAGCATTACATTACATGTCGAGAATATCCTTTAGGAGCATCTGGCAATAGTAGACGTACCCTTAGAAAGTTGGCTATGAACTTCTTTCTTACTCTAATACTATCTTAAATTTAGTATAGATTATCATAATTATTATAATTCATCAACTATAATAATCAACTCAATGCTTCAAACACATCATAGTTTGTCGTATATACTAATATGTGCAACTACTACAAAATATGTCTTGTACCAACTTGACACTTGCAATTTGTACCTACTTGACATCTTTTTATAAAAAATGTCAAATAATGAGTACTATTGAAAGTAGAGAAAGAGAACACACACATTTACGTGGAAATTCGAGTATCAGACGAAAAACTACGATATTTTTCTTCTTAGTATTTTATGATAAAATACAACGGGTACAAGAGGGGAATAAATAGAAAAATACAAAGAGATTACAAGATTACAAAATGCATTGAAAAATATTTCCCAATGTTCTCTTCAACAACAGGAAGGACGTCAGAAATATTATGTTCGGAGACCCATTCCCGACGCAACACAAAGATGCTTCTGGATTGACTTTTCCCCGACGTGCATTTGGTCGAGAGGTCAAGGTGTCGGGGTAACCTTATATGACTCCCCTGACATTCACGAGGACGTCGGGAGAAGGTGTTTCCCGAAGCTACATCATGTAAACTATTTTCGATGTCCTTACATTGGTCACGAAAAGACCTATTTTCCAATGTAATATGTGCATCAGGAATAATAATTTGAGTTTTTTTATTTTAATTTTAAATTTTAAATTTTTTGTTCGATTATAGTTTTTATTTGATTTCAATTCGATTTAATTTAAATAAAAACTGAACAACCAAAGTAGTAAATAATATGTCCAAATCAAAATTGTATTATAATTAAATAAATGTTTCTCACAAGAACACAATTTCAAATTTGTTAAAAGAAATTACATGAAAAAGAAAATTAAAATAATTTAGCCGCAGACGCCATACTTCAACAGGTCCACACCTTCAACGACAAAAAATTAAATTTAGATATATATAATGCTAATATCACTAATAATGCAAAATAAACAATGTTAAAGTTCAAAAATACATACCTCGGGTTCTCCACTCACGATCCTCTCTGTGTTCGACTTATTTCTTCAATCTTCTTCATCATTTCTTCCATTTGTTTAGATTGCAGCTCAGGCATCCTTCTCTGCTCTTTAA

mRNA sequence

ATGGATCCTATAAAGTATATTTTTGAAAAGCCATCTCTGTCTGGAAGAATGGCTAAATGGAAAGTATTGCTATCCGAGTATGACATCATCTGTGTTACAAGAAAGACAGTAAAAGGAAGTGCAATTGCTGATTGTCTAGCTCATTTGTCAGTTGAAGACTATGAACCAATGAAATTTGAATTTTCAGATGAGGACGTCATGACAGTATCAGAGACACCGCAGGATACAGAAACATGGACGATGTTGTTTGATGGAGCCACAAATGAAGTAGGACATGGTGTGGGAGCTATTCTAACGTTTCCTGATGGAGGAACATATCCTCTAACTGCTAAGTTGTACTTTAATTGCACGAATAACATGGCGGAGTATGAAGCATGCAGTATGGGAGTTCAAATGGCCTATGACATGAAGATTAAGAAGTTACAAGTTTATGGAGATTCTCTCTTGGAAGGACGTCAGAAATATTATGTTCGGAGACCCATTCCCGACGCAACACAAAGATGCTTCTGGATTGACTTTTCCCCGACGTGCATTTGGTCGAGAGGTCAAGGTGTCGGGGTAACCTTATATGACTCCCCTGACATTCACGAGGACGTCGGGAGAAGGTGTTTCCCGAAGCTACATCATATTGCAGCTCAGGCATCCTTCTCTGCTCTTTAA

Coding sequence (CDS)

ATGGATCCTATAAAGTATATTTTTGAAAAGCCATCTCTGTCTGGAAGAATGGCTAAATGGAAAGTATTGCTATCCGAGTATGACATCATCTGTGTTACAAGAAAGACAGTAAAAGGAAGTGCAATTGCTGATTGTCTAGCTCATTTGTCAGTTGAAGACTATGAACCAATGAAATTTGAATTTTCAGATGAGGACGTCATGACAGTATCAGAGACACCGCAGGATACAGAAACATGGACGATGTTGTTTGATGGAGCCACAAATGAAGTAGGACATGGTGTGGGAGCTATTCTAACGTTTCCTGATGGAGGAACATATCCTCTAACTGCTAAGTTGTACTTTAATTGCACGAATAACATGGCGGAGTATGAAGCATGCAGTATGGGAGTTCAAATGGCCTATGACATGAAGATTAAGAAGTTACAAGTTTATGGAGATTCTCTCTTGGAAGGACGTCAGAAATATTATGTTCGGAGACCCATTCCCGACGCAACACAAAGATGCTTCTGGATTGACTTTTCCCCGACGTGCATTTGGTCGAGAGGTCAAGGTGTCGGGGTAACCTTATATGACTCCCCTGACATTCACGAGGACGTCGGGAGAAGGTGTTTCCCGAAGCTACATCATATTGCAGCTCAGGCATCCTTCTCTGCTCTTTAA

Protein sequence

MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLLEGRQKYYVRRPIPDATQRCFWIDFSPTCIWSRGQGVGVTLYDSPDIHEDVGRRCFPKLHHIAAQASFSAL*

Homology

[Close]

BLAST of CSPI01G18830 vs. ExPASy TrEMBL
Match: A0A5A7UKV4 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00350 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 8.1e-67
Identity = 128/149 (85.91%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
           MDPIKYIFEKPSLSGR+AKW+VL SEYDII VTR  VKGSAI DCLA L VEDYE MKFE
Sbjct: 1   MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFE 60

Query: 61  FSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNM 120
           F DEDVMTVS+TPQDTE WTM FDGATNEVGHGVGAILTFPDG +YPLTAKLYF+CTNNM
Sbjct: 61  FLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFDCTNNM 120

Query: 121 AEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
           AEYE CSMGV+MAYD+KIKKLQVY DSLL
Sbjct: 121 AEYETCSMGVKMAYDLKIKKLQVYEDSLL 149

[Close]

BLAST of CSPI01G18830 vs. ExPASy TrEMBL
Match: A0A1S4DTT9 (uncharacterized protein LOC107990505 OS=Cucumis melo OX=3656 GN=LOC107990505 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 8.1e-67
Identity = 128/149 (85.91%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
           MDPIKYIFEKPSLSGR+AKW+VL SEYDII VTR  VKGSAI DCLA L VEDYE MKFE
Sbjct: 1   MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFE 60

Query: 61  FSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNM 120
           F DEDVMTVS+TPQDTE WTM FDGATNEVGHGVGAILTFPDG +YPLTAKLYF+CTNNM
Sbjct: 61  FLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFDCTNNM 120

Query: 121 AEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
           AEYE CSMGV+MAYD+KIKKLQVY DSLL
Sbjct: 121 AEYETCSMGVKMAYDLKIKKLQVYEDSLL 149

[Close]

BLAST of CSPI01G18830 vs. ExPASy TrEMBL
Match: A0A5D3BPI8 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00050 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.1e-62
Identity = 122/149 (81.88%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 1   MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
           MDPIKYIFEK SL GR+AKW+VLL EYDII VTRK +KGSAI DCLA+  VEDYEPMK E
Sbjct: 64  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIE 123

Query: 61  FSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNM 120
           F DEDVM VS+T QDTE WTM FDGATNEVGHGVGAILT  DG +YPLT KLYF+CT+NM
Sbjct: 124 FPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTSSDGKSYPLTTKLYFDCTHNM 183

Query: 121 AEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
           AEYEACSMGVQMAYDMKIKKLQVY DSLL
Sbjct: 184 AEYEACSMGVQMAYDMKIKKLQVYRDSLL 212

[Close]

BLAST of CSPI01G18830 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 102/151 (67.55%), Postives = 125/151 (82.78%), Query Frame = 0


Query: 1    MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
            MDPIKYIFEKPSLSGR+A+W+VLLSEYDI+ VTRK +KGSA+AD LA   + DY P+KF+
Sbjct: 1219 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTRKAIKGSALADYLAQQPINDYIPVKFD 1278

Query: 61   FSDEDVMTV--SETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTN 120
            F DE + T+  SE   D +TWTM+FDGA+NE+GHG+G IL  P G  YPLTA+L F+CT+
Sbjct: 1279 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGGILISPKGELYPLTARLCFDCTH 1338

Query: 121  NMAEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
            NMAEYEACSMGVQ A DMK+KKL+V+GDS+L
Sbjct: 1339 NMAEYEACSMGVQAAVDMKVKKLKVFGDSML 1369

[Close]

BLAST of CSPI01G18830 vs. ExPASy TrEMBL
Match: A0A1S3BH42 (uncharacterized protein LOC103489784 OS=Cucumis melo OX=3656 GN=LOC103489784 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52
Identity = 100/149 (67.11%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
           MDPIKYIFEKPSLS ++AKW VLL E+DI+ +TRK +KGS I DCL  L +EDYEPMKF+
Sbjct: 64  MDPIKYIFEKPSLSEKIAKWHVLLLEFDIVYITRKAIKGSVIVDCLVELPIEDYEPMKFD 123

Query: 61  FSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNM 120
           F DED+MT+  T  D  TWTM+FD ATN+VGHG+G  L  PD   YP T KLYF+CTNNM
Sbjct: 124 FLDEDIMTIVNTSSD--TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFDCTNNM 183

Query: 121 AEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
            EY+ACSMGV++AY+MKIK L+V GDSLL
Sbjct: 184 VEYKACSMGVRIAYEMKIKNLRVLGDSLL 210

[Close]

BLAST of CSPI01G18830 vs. NCBI nr
Match: XP_016899404.1 (PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo] >KAA0054926.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa] >TYK22715.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 263.5 bits (672), Expect = 1.7e-66
Identity = 128/149 (85.91%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
           MDPIKYIFEKPSLSGR+AKW+VL SEYDII VTR  VKGSAI DCLA L VEDYE MKFE
Sbjct: 1   MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFE 60

Query: 61  FSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNM 120
           F DEDVMTVS+TPQDTE WTM FDGATNEVGHGVGAILTFPDG +YPLTAKLYF+CTNNM
Sbjct: 61  FLDEDVMTVSDTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFDCTNNM 120

Query: 121 AEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
           AEYE CSMGV+MAYD+KIKKLQVY DSLL
Sbjct: 121 AEYETCSMGVKMAYDLKIKKLQVYEDSLL 149

[Close]

BLAST of CSPI01G18830 vs. NCBI nr
Match: KAA0033845.1 (uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa] >TYK01227.1 uncharacterized protein E5676_scaffold49G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 4.3e-62
Identity = 122/149 (81.88%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 1   MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
           MDPIKYIFEK SL GR+AKW+VLL EYDII VTRK +KGSAI DCLA+  VEDYEPMK E
Sbjct: 64  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIE 123

Query: 61  FSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNM 120
           F DEDVM VS+T QDTE WTM FDGATNEVGHGVGAILT  DG +YPLT KLYF+CT+NM
Sbjct: 124 FPDEDVMIVSDTLQDTEIWTMFFDGATNEVGHGVGAILTSSDGKSYPLTTKLYFDCTHNM 183

Query: 121 AEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
           AEYEACSMGVQMAYDMKIKKLQVY DSLL
Sbjct: 184 AEYEACSMGVQMAYDMKIKKLQVYRDSLL 212

[Close]

BLAST of CSPI01G18830 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 215.7 bits (548), Expect = 4.0e-52
Identity = 102/151 (67.55%), Postives = 125/151 (82.78%), Query Frame = 0


Query: 1    MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
            MDPIKYIFEKPSLSGR+A+W+VLLSEYDI+ VTRK +KGSA+AD LA   + DY P+KF+
Sbjct: 1219 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTRKAIKGSALADYLAQQPINDYIPVKFD 1278

Query: 61   FSDEDVMTV--SETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTN 120
            F DE + T+  SE   D +TWTM+FDGA+NE+GHG+G IL  P G  YPLTA+L F+CT+
Sbjct: 1279 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGGILISPKGELYPLTARLCFDCTH 1338

Query: 121  NMAEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
            NMAEYEACSMGVQ A DMK+KKL+V+GDS+L
Sbjct: 1339 NMAEYEACSMGVQAAVDMKVKKLKVFGDSML 1369

[Close]

BLAST of CSPI01G18830 vs. NCBI nr
Match: XP_008447313.1 (PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 6.8e-52
Identity = 100/149 (67.11%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
           MDPIKYIFEKPSLS ++AKW VLL E+DI+ +TRK +KGS I DCL  L +EDYEPMKF+
Sbjct: 64  MDPIKYIFEKPSLSEKIAKWHVLLLEFDIVYITRKAIKGSVIVDCLVELPIEDYEPMKFD 123

Query: 61  FSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNM 120
           F DED+MT+  T  D  TWTM+FD ATN+VGHG+G  L  PD   YP T KLYF+CTNNM
Sbjct: 124 FLDEDIMTIVNTSSD--TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFDCTNNM 183

Query: 121 AEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
            EY+ACSMGV++AY+MKIK L+V GDSLL
Sbjct: 184 VEYKACSMGVRIAYEMKIKNLRVLGDSLL 210

[Close]

BLAST of CSPI01G18830 vs. NCBI nr
Match: TYK16555.1 (protein NYNRIN-like [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51
Identity = 99/149 (66.44%), Postives = 123/149 (82.55%), Query Frame = 0


Query: 1   MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFE 60
           MDPIKYIFEKPSLSGR+AKW+VLLSEYDI+ VT+K +KGSA+AD LA   V DYEPM+ +
Sbjct: 347 MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAVADHLAAQPVADYEPMRID 406

Query: 61  FSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNM 120
           F DE++  V +  +D ETWTMLFDGA+NE+GHG+G +L  P+G  +PLTAKL F CT+N+
Sbjct: 407 FPDENIFLVEKNARDHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTHNI 466

Query: 121 AEYEACSMGVQMAYDMKIKKLQVYGDSLL 150
           AEYEAC MG+Q+A DM IKKL+V GDS+L
Sbjct: 467 AEYEACIMGLQVACDMSIKKLKVLGDSML 495

[Close]

BLAST of CSPI01G18830 vs. TAIR 10
Match: AT3G01410.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 69  VSETP-QDTETWTMLFDGAT--NEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNMAEYEA 128
           ++ TP +  ++ T+ FDGA+  N    G GA+L   D        +   N TNN+AEY A
Sbjct: 144 LTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRA 203

Query: 129 CSMGVQMAYDMKIKKLQVYGDSLL 150
             +G++ A D   K + V GDS+L
Sbjct: 204 LLLGLRSALDKGFKNVHVLGDSML 227

[Close]

BLAST of CSPI01G18830 vs. TAIR 10
Match: AT3G01410.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-05
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 69  VSETP-QDTETWTMLFDGAT--NEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNMAEYEA 128
           ++ TP +  ++ T+ FDGA+  N    G GA+L   D        +   N TNN+AEY A
Sbjct: 144 LTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRA 203

Query: 129 CSMGVQMAYDMKIKKLQVYGDSLL 150
             +G++ A D   K + V GDS+L
Sbjct: 204 LLLGLRSALDKGFKNVHVLGDSML 227

The following BLAST results are available for this feature:

BLAST of CSPI01G18830 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G18830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKV4	8.1e-67	85.91	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A1S4DTT9	8.1e-67	85.91	uncharacterized protein LOC107990505 OS=Cucumis melo OX=3656 GN=LOC107990505 PE=...	[more]
A0A5D3BPI8	2.1e-62	81.88	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1E2J7	1.9e-52	67.55	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A1S3BH42	3.3e-52	67.11	uncharacterized protein LOC103489784 OS=Cucumis melo OX=3656 GN=LOC103489784 PE=...	[more]

BLAST of CSPI01G18830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899404.1	1.7e-66	85.91	PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo] >KAA0054926.1 Ret...	[more]
KAA0033845.1	4.3e-62	81.88	uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa] >TY...	[more]
XP_022158986.1	4.0e-52	67.55	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_008447313.1	6.8e-52	67.11	PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo]	[more]
TYK16555.1	1.5e-51	66.44	protein NYNRIN-like [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G18830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01410.1	1.3e-05	35.71	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G01410.2	1.3e-05	35.71	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 77..153 e-value: 5.2E-12 score: 47.9
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 83..148 e-value: 1.2E-5 score: 25.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..149
None	No IPR available	PANTHER	PTHR24559:SF322	RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN	coord: 2..149
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 77..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G18830.1	CSPI01G18830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding