CSPI01G18450 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G18450
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr1: 13871129 .. 13871344 (+)
RNA-Seq Expression	CSPI01G18450
Synteny	CSPI01G18450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCCGTTGTATTTGAAAATTACAATGATGCTGATTGGAACTCCCTCTCAGATGATTTAAAGGTTACAAGTGGCTATATTTTTAATATAGCAGGAGGAGCTGTTGCTTGGAAATTCAAGAAACAGACCATCTTGGCCCAGTCAACGATGAAGTCTGAAATGATTGCACTAGCTACTTCTAGTGAAGAAGCAAGTTGGCTTCGAAGCTTGCTATAA

mRNA sequence

TTTTCCGTTGTATTTGAAAATTACAATGATGCTGATTGGAACTCCCTCTCAGATGATTTAAAGGTTACAAGTGGCTATATTTTTAATATAGCAGGAGGAGCTGTTGCTTGGAAATTCAAGAAACAGACCATCTTGGCCCAGTCAACGATGAAGTCTGAAATGATTGCACTAGCTACTTCTAGTGAAGAAGCAAGTTGGCTTCGAAGCTTGCTATAA

Coding sequence (CDS)

TTTTCCGTTGTATTTGAAAATTACAATGATGCTGATTGGAACTCCCTCTCAGATGATTTAAAGGTTACAAGTGGCTATATTTTTAATATAGCAGGAGGAGCTGTTGCTTGGAAATTCAAGAAACAGACCATCTTGGCCCAGTCAACGATGAAGTCTGAAATGATTGCACTAGCTACTTCTAGTGAAGAAGCAAGTTGGCTTCGAAGCTTGCTATAA

Protein sequence

FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL*

Homology

[Close]

BLAST of CSPI01G18450 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-08
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 8   YNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWL 67
           Y+DADW    +  + TSGY+F + GG V+W+ KKQ  +A S+ + E +AL+ +++EA WL
Sbjct: 74  YSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of CSPI01G18450 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-07
Identity = 25/68 (36.76%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 4    VFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEE 63
            + + Y DAD     D+ K ++GY+F  +GGA++W+ K Q  +A ST ++E IA   + +E
Sbjct: 1174 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1233

Query: 64   ASWLRSLL 72
              WL+  L
Sbjct: 1234 MIWLKRFL 1241

[Close]

BLAST of CSPI01G18450 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.6e-06
Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 8    YNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWL 67
            Y+DADW   +DD   T+GYI  +    ++W  KKQ  + +S+ ++E  ++A +S E  W+
Sbjct: 1295 YSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWI 1354

Query: 68   RSLL 72
             SLL
Sbjct: 1355 CSLL 1358

[Close]

BLAST of CSPI01G18450 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 24/64 (37.50%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 8    YNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWL 67
            Y+DADW    DD   T+GYI  +    ++W  KKQ  + +S+ ++E  ++A +S E  W+
Sbjct: 1312 YSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWI 1371

Query: 68   RSLL 72
             SLL
Sbjct: 1372 CSLL 1375

[Close]

BLAST of CSPI01G18450 vs. ExPASy TrEMBL
Match: A0A445M2H4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3848 GN=D0Y65_001367 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-24
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
           FS V E YNDADWN+LSDD K TSGYIF+IAGGA++WK KKQTILAQSTM+SEMIALAT+
Sbjct: 323 FSAVLEGYNDADWNTLSDDSKATSGYIFSIAGGAISWKSKKQTILAQSTMESEMIALATA 382

Query: 61  SEEASWLRSLL 72
           SEEASWLRSLL
Sbjct: 383 SEEASWLRSLL 393

[Close]

BLAST of CSPI01G18450 vs. ExPASy TrEMBL
Match: A0A5D3DJH9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00620 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-23
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
           FS V E YND DWNSLSDD K TSGYIFNIAGG VAWK KKQTILAQS M+SEMIALAT+
Sbjct: 357 FSTVLEGYNDVDWNSLSDDSKATSGYIFNIAGGVVAWKSKKQTILAQSMMESEMIALATA 416

Query: 61  SEEASWLRSLL 72
           S+EASWL+SLL
Sbjct: 417 SKEASWLQSLL 427

[Close]

BLAST of CSPI01G18450 vs. ExPASy TrEMBL
Match: A0A5D3BGA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00230 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-23
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
           F  V E Y+DADWNSLSDD K TSGYIFNI GGAVAWK KKQTILAQSTM+SEMIALA +
Sbjct: 679 FPTVLEGYSDADWNSLSDDSKATSGYIFNIEGGAVAWKSKKQTILAQSTMESEMIALAGA 738

Query: 61  SEEASWLRSLL 72
           SEEASWLRSLL
Sbjct: 739 SEEASWLRSLL 749

[Close]

BLAST of CSPI01G18450 vs. ExPASy TrEMBL
Match: A0A6A4PET0 (Putative RNA-directed DNA polymerase OS=Lupinus albus OX=3870 GN=Lalb_Chr15g0086811 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-23
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
          F  V E Y+DADWN+LSDD K TSGYIF+IAGGAV+WK KKQTILAQSTM++EMIALAT+
Sbjct: 27 FPAVLEGYSDADWNTLSDDSKATSGYIFSIAGGAVSWKSKKQTILAQSTMEAEMIALATA 86

Query: 61 SEEASWLRSLL 72
          SEEASWLRSLL
Sbjct: 87 SEEASWLRSLL 97

[Close]

BLAST of CSPI01G18450 vs. ExPASy TrEMBL
Match: A0A6A4MUS8 (Putative RNA-directed DNA polymerase OS=Lupinus albus OX=3870 GN=Lalb_Chr00c59g0413801 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-23
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
          F  V E Y+DADWN+LSDD K TSGYIF+IAGGAV+WK KKQTILAQSTM++EMIALAT+
Sbjct: 17 FPAVLEGYSDADWNTLSDDSKATSGYIFSIAGGAVSWKSKKQTILAQSTMEAEMIALATA 76

Query: 61 SEEASWLRSLL 72
          SEEASWLRSLL
Sbjct: 77 SEEASWLRSLL 87

[Close]

BLAST of CSPI01G18450 vs. NCBI nr
Match: RZC29738.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja])

HSP 1 Score: 120.9 bits (302), Expect = 4.4e-24
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
           FS V E YNDADWN+LSDD K TSGYIF+IAGGA++WK KKQTILAQSTM+SEMIALAT+
Sbjct: 323 FSAVLEGYNDADWNTLSDDSKATSGYIFSIAGGAISWKSKKQTILAQSTMESEMIALATA 382

Query: 61  SEEASWLRSLL 72
           SEEASWLRSLL
Sbjct: 383 SEEASWLRSLL 393

[Close]

BLAST of CSPI01G18450 vs. NCBI nr
Match: KAA0058878.1 (putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 6.3e-23
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
           FS V E YND DWNSLSDD K TSGYIFNIAGG VAWK KKQTILAQS M+SEMIALAT+
Sbjct: 357 FSTVLEGYNDVDWNSLSDDSKATSGYIFNIAGGVVAWKSKKQTILAQSMMESEMIALATA 416

Query: 61  SEEASWLRSLL 72
           S+EASWL+SLL
Sbjct: 417 SKEASWLQSLL 427

[Close]

BLAST of CSPI01G18450 vs. NCBI nr
Match: TYJ98069.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 6.3e-23
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
           F  V E Y+DADWNSLSDD K TSGYIFNI GGAVAWK KKQTILAQSTM+SEMIALA +
Sbjct: 679 FPTVLEGYSDADWNSLSDDSKATSGYIFNIEGGAVAWKSKKQTILAQSTMESEMIALAGA 738

Query: 61  SEEASWLRSLL 72
           SEEASWLRSLL
Sbjct: 739 SEEASWLRSLL 749

[Close]

BLAST of CSPI01G18450 vs. NCBI nr
Match: KAE9584075.1 (putative RNA-directed DNA polymerase [Lupinus albus])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
          F  V E Y+DADWN+LSDD K TSGYIF+IAGGAV+WK KKQTILAQSTM++EMIALAT+
Sbjct: 17 FPAVLEGYSDADWNTLSDDSKATSGYIFSIAGGAVSWKSKKQTILAQSTMEAEMIALATA 76

Query: 61 SEEASWLRSLL 72
          SEEASWLRSLL
Sbjct: 77 SEEASWLRSLL 87

[Close]

BLAST of CSPI01G18450 vs. NCBI nr
Match: KAE9598987.1 (putative RNA-directed DNA polymerase [Lupinus albus])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATS 60
          F  V E Y+DADWN+LSDD K TSGYIF+IAGGAV+WK KKQTILAQSTM++EMIALAT+
Sbjct: 27 FPAVLEGYSDADWNTLSDDSKATSGYIFSIAGGAVSWKSKKQTILAQSTMEAEMIALATA 86

Query: 61 SEEASWLRSLL 72
          SEEASWLRSLL
Sbjct: 87 SEEASWLRSLL 97

The following BLAST results are available for this feature:

BLAST of CSPI01G18450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CV72	2.1e-08	43.33	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P10978	6.6e-07	36.76	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	9.6e-06	37.50	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-05	37.50	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of CSPI01G18450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445M2H4	2.1e-24	83.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Glycine soja OX=3...	[more]
A0A5D3DJH9	3.1e-23	81.69	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold160...	[more]
A0A5D3BGA0	3.1e-23	83.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6A4PET0	5.2e-23	80.28	Putative RNA-directed DNA polymerase OS=Lupinus albus OX=3870 GN=Lalb_Chr15g0086...	[more]
A0A6A4MUS8	5.2e-23	80.28	Putative RNA-directed DNA polymerase OS=Lupinus albus OX=3870 GN=Lalb_Chr00c59g0...	[more]

BLAST of CSPI01G18450 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC29738.1	4.4e-24	83.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]	[more]
KAA0058878.1	6.3e-23	81.69	putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein...	[more]
TYJ98069.1	6.3e-23	83.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAE9584075.1	1.1e-22	80.28	putative RNA-directed DNA polymerase [Lupinus albus]	[more]
KAE9598987.1	1.1e-22	80.28	putative RNA-directed DNA polymerase [Lupinus albus]	[more]

BLAST of CSPI01G18450 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 8..71 e-value: 2.35364E-24 score: 86.3681

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G18450.1	CSPI01G18450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding