CSPI01G18160 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G18160
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	glycine-rich cell wall structural protein 2-like
Location	Chr1: 13626055 .. 13626423 (-)
RNA-Seq Expression	CSPI01G18160
Synteny	CSPI01G18160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAGCAATCAAACAAATATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGGAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAA

mRNA sequence

CTTAGCAATCAAACAAATATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGGAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAA

Coding sequence (CDS)

ATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGGAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAA

Protein sequence

MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGSGSGSSSASSSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN*

Homology

[Close]

BLAST of CSPI01G18160 vs. ExPASy TrEMBL
Match: A0A0A0LZ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.9e-41
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS
Sbjct: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN 117
           GSGSSSAS SHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN
Sbjct: 61  GSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN 116

[Close]

BLAST of CSPI01G18160 vs. ExPASy TrEMBL
Match: A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.0e-29
Identity = 105/140 (75.00%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASIR VAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTG+GLGL   GSGSG GS
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL--DGSGSGFGS 60

Query: 61  GSGSSSASSSHS------------------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGE 117
           G GSSSASSSHS                  SYAGS  GSGSGRNRNGGSGSGSG GNGGE
Sbjct: 61  GPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGE 120

[Close]

BLAST of CSPI01G18160 vs. ExPASy TrEMBL
Match: A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.7e-26
Identity = 100/147 (68.03%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60
           MASIR+V+++  LL +SVIVSESRVAR DLGLDLGGVG+G+GTG+GLGLG    GSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASSSHS--------------SYAGSYVGSGSGRNRNGGSGSGSGRGN--- 117
           GSGSGSGSSSASSSHS              SYAGSY GSGSGRNRNGGSGSGSG G+   
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120

[Close]

BLAST of CSPI01G18160 vs. ExPASy TrEMBL
Match: A0A6J1E521 (putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.2e-22
Identity = 91/142 (64.08%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASI S+ VV FLL  SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSSHS--------------------SYAGSYVGSGSGRNRNGGSGSGSGRG-- 114
           GSGS S SSS S                    SYAGS  GSGSG NRNGGSGSGSG G  
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120

[Close]

BLAST of CSPI01G18160 vs. ExPASy TrEMBL
Match: A0A6J1E2L1 (cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430014 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 91/162 (56.17%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASI S+ VV FLL  SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSSHS----------------------------------------SYAGSYVG 114
           GSGS S SSS S                                        SYAGS  G
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGSGAGSEAGSYAGSRAG 120

[Close]

BLAST of CSPI01G18160 vs. NCBI nr
Match: XP_011656035.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65266.1 hypothetical protein Csa_019849 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS
Sbjct: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN 117
           GSGSSSAS SHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN
Sbjct: 61  GSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN 116

[Close]

BLAST of CSPI01G18160 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-28
Identity = 105/140 (75.00%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASIR VAVVTFLLGVSVIVSESRVARKDLGLDLGG+GLGVGTG+GLGL   GSGSG GS
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL--DGSGSGFGS 60

Query: 61  GSGSSSASSSHS------------------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGE 117
           G GSSSASSSHS                  SYAGS  GSGSGRNRNGGSGSGSG GNGGE
Sbjct: 61  GPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGE 120

[Close]

BLAST of CSPI01G18160 vs. NCBI nr
Match: XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-26
Identity = 100/147 (68.03%), Postives = 109/147 (74.15%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60
           MASIR+V+++  LL +SVIVSESRVAR DLGLDLGGVG+G+GTG+GLGLG    GSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASSSHS--------------SYAGSYVGSGSGRNRNGGSGSGSGRGN--- 117
           GSGSGSGSSSASSSHS              SYAGSY GSGSGRNRNGGSGSGSG G+   
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSGSGRNRNGGSGSGSGSGSGYG 120

[Close]

BLAST of CSPI01G18160 vs. NCBI nr
Match: XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 102/151 (67.55%), Postives = 107/151 (70.86%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLG----GSGSGS 60
           MASIR+V ++ FLLGVSVIVSE RVAR +LGLDLGGVGLGVGTG+GLGLG    GSGSGS
Sbjct: 1   MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASSSHS------------------SYAGSYVGSGSGRNRNGGSGSGSGRG 117
           GSGSGSGSSSASSSHS                  SYAGS  GSGSGRNRNGGSGSGSG G
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120

[Close]

BLAST of CSPI01G18160 vs. NCBI nr
Match: XP_022921883.1 (putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-21
Identity = 91/142 (64.08%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60
           MASI S+ VV FLL  SVI+S++RVARKDLGLDLGG+G+G+GTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASINSLIVVCFLLSFSVILSQARVARKDLGLDLGGLGVGIGTGIGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSSHS--------------------SYAGSYVGSGSGRNRNGGSGSGSGRG-- 114
           GSGS S SSS S                    SYAGS  GSGSG NRNGGSGSGSG G  
Sbjct: 61  GSGSGSGSSSSSSSSSYSSSSGSGSGAGSEAGSYAGSRAGSGSGPNRNGGSGSGSGYGGG 120

[Close]

BLAST of CSPI01G18160 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-15
Identity = 78/148 (52.70%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 6   SVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGSGSG-- 65
           S+ ++T +L  SV+VSESRVARKDLGLDLGG+G G+G G+G+G GGSGSG+G+GSGSG  
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 66  -------SSSASSSHS------------SYAGSYVG------SGSGRNR--------NGG 114
                  SSS+SSS S            SYAGS+ G      SGSGR R         GG
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128

[Close]

BLAST of CSPI01G18160 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-10
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 12  FLLGVSVI-----VSESRVARKDLGLDLGGVGLGVGTGMGLGLG---GSGSGSGSGSGSG 71
           FLLG+ VI     ++ESR+ARKDLG+DLGG+G+G+G G+G+GLG   GSG+G+GSGSGSG
Sbjct: 8   FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSG 67

Query: 72  SSSASSSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNG 101
           S S+SSS SS + S  GSG     + GS +GS  G+G
Sbjct: 68  SRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSG 104

The following BLAST results are available for this feature:

BLAST of CSPI01G18160 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G18160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ57	6.9e-41	99.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1	[more]
A0A1S3B8Y8	8.0e-29	75.00	putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1E1T0	1.7e-26	68.03	glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1E521	7.2e-22	64.08	putative glycine-rich cell wall structural protein 1 isoform X3 OS=Cucurbita mos...	[more]
A0A6J1E2L1	1.5e-19	56.17	cell wall protein IFF6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of CSPI01G18160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656035.1	1.4e-40	99.14	glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65266.1 hypoth...	[more]
XP_008443812.1	1.6e-28	75.00	PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo]	[more]
XP_022921884.1	3.4e-26	68.03	glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974...	[more]
XP_038879815.1	1.3e-25	67.55	putative per-hexamer repeat protein 5 [Benincasa hispida]	[more]
XP_022921883.1	1.5e-21	64.08	putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita mosch...	[more]

BLAST of CSPI01G18160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	3.8e-15	52.70	glycine-rich protein	[more]
AT4G30450.1	3.7e-10	56.70	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..116
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 1..73
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G18160.1	CSPI01G18160.1	mRNA