CSPI01G17720 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G17720
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 13333781 .. 13334058 (+)
RNA-Seq ExpressionCSPI01G17720
SyntenyCSPI01G17720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGGGATATATCTGTACGTGCGAGGATGTGTGTTGTTGGGAGTAGAGATACCGGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

mRNA sequence

CTAGGGATATATCTGTACGTGCGAGGATGTGTGTTGTTGGGAGTAGAGATACCGGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Coding sequence (CDS)

ATGTGTGTTGTTGGGAGTAGAGATACCGGTGGTAACTTTGGCAACATCAAGAGCAGAAGCTTCCGGCTTATTCTTAGTAGCCAATCGCCATTCTCATTGGACAAACAGGAAGCTTCTTGCGCTGGTGAAGAACCTCAGTGGTGTGCTGAGCCAGAGATGGGCCGTTCATTCTGTCGCCGGTGGCATTTACTTGCTGTGATCCTGTCATTGCCGATGCTCTGTTCTTCCTCTGTTTTTGGATTTTCTTTGTGA

Protein sequence

MCVVGSRDTGGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRRWHLLAVILSLPMLCSSSVFGFSL*
Homology
[Close]
BLAST of CSPI01G17720 vs. ExPASy TrEMBL
Match: A0A0A0LW11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256730 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0 

Query: 1  MCVVGSRDTGGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDT GNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

[Close]
BLAST of CSPI01G17720 vs. NCBI nr
Match: KGN65164.1 (hypothetical protein Csa_019648 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 3.3e-39
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0 

Query: 1  MCVVGSRDTGGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60
          MCVVGSRDT GNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR
Sbjct: 1  MCVVGSRDTRGNFGNIKSRSFRLILSSQSPFSLDKQEASCAGEEPQWCAEPEMGRSFCRR 60

Query: 61 WHLLAVILSLPMLCSSSVFGFSL 84
          WHLLAVILSLPMLCSSSVFGFSL
Sbjct: 61 WHLLAVILSLPMLCSSSVFGFSL 83

The following BLAST results are available for this feature:
BLAST of CSPI01G17720 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G17720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW111.6e-3998.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256730 PE=4 SV=1[more]
BLAST of CSPI01G17720 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65164.13.3e-3998.80hypothetical protein Csa_019648 [Cucumis sativus][more]
BLAST of CSPI01G17720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17720.1CSPI01G17720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane