CSPI01G15010 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G15010
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 10645002 .. 10645310 (+)
RNA-Seq Expression	CSPI01G15010
Synteny	CSPI01G15010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCTTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

mRNA sequence

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCTTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Coding sequence (CDS)

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCTTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Protein sequence

MGMTNKVRFKTEEEGVLFKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTVQICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR*

Homology

[Close]

BLAST of CSPI01G15010 vs. ExPASy TrEMBL
Match: A0A0A0LSS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168860 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.2e-50
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MGMTNKVRFKTEEEGVLFKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
           MGMTNKVRFKTEEEGVL KQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1   MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 103
           QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR
Sbjct: 61  QICLTTYTFFRRLIQPPTRHPHSSILQNASTKSPPTSNPRTR 102

[Close]

BLAST of CSPI01G15010 vs. NCBI nr
Match: KAE8652816.1 (hypothetical protein Csa_022858, partial [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 3.7e-32
Identity = 74/84 (88.10%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MGMTNKVRFKTEEEGVLFKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
          MGMTNKVRFKTEEEGVL KQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1  MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61 QICLTTYTFFRRLIQPPTRHPHSS 85
          QICLTTYTFF     PP   PH+S
Sbjct: 61 QICLTTYTFF----PPPNSTPHAS 80

[Close]

BLAST of CSPI01G15010 vs. NCBI nr
Match: KAG6573636.1 (hypothetical protein SDJN03_27523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-06
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 39  PTQKLVAIAMAPTEPSISDQTVQICLTTYTFFRRLIQPP 78
           PT++L+AI MAPTEP ISD TVQICLTTYTFF  L Q P
Sbjct: 95  PTEELIAIGMAPTEPWISDSTVQICLTTYTFFPSLNQSP 133

The following BLAST results are available for this feature:

BLAST of CSPI01G15010 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G15010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSS3	7.2e-50	99.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168860 PE=4 SV=1	[more]

BLAST of CSPI01G15010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652816.1	3.7e-32	88.10	hypothetical protein Csa_022858, partial [Cucumis sativus]	[more]
KAG6573636.1	7.7e-06	74.36	hypothetical protein SDJN03_27523, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI01G15010 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G15010.1	CSPI01G15010.1	mRNA