CSPI01G14880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G14880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	Chr1: 10537388 .. 10537720 (+)
RNA-Seq Expression	CSPI01G14880
Synteny	CSPI01G14880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACAATATGGTCTATCAATGGAATTTTGGCTGCATCCTTGAGTTTAAAGTATGTCATTTTACACGAAATTGGAATTGCCAACTGGTTCCCCTCATCCCATGCATCAAGTGTCTCTAATGCTCTTGCTACGTTTTTATATCGAATTAGTACTGAATTGACTTTGGATGCTAGGCTGTTTATTTACTTGCAGTTGTTAAGGCATATTGGTACGTTTGGGGTAAAAATTCCACTCGCTCTTCCTCGGTTCTTCTTCAGTTTCTTGCTTCACTTACAACCTGATATTTTAACTAATCTTGATGCTCCGAGCCCAATCCATGCACCTTATTAT

mRNA sequence

ATGCTTACAATATGGTCTATCAATGGAATTTTGGCTGCATCCTTGAGTTTAAAGTATGTCATTTTACACGAAATTGGAATTGCCAACTGGTTCCCCTCATCCCATGCATCAAGTGTCTCTAATGCTCTTGCTACGTTTTTATATCGAATTAGTACTGAATTGACTTTGGATGCTAGGCTGTTTATTTACTTGCAGTTGTTAAGGCATATTGGTACGTTTGGGGTAAAAATTCCACTCGCTCTTCCTCGGTTCTTCTTCAGTTTCTTGCTTCACTTACAACCTGATATTTTAACTAATCTTGATGCTCCGAGCCCAATCCATGCACCTTATTAT

Coding sequence (CDS)

ATGCTTACAATATGGTCTATCAATGGAATTTTGGCTGCATCCTTGAGTTTAAAGTATGTCATTTTACACGAAATTGGAATTGCCAACTGGTTCCCCTCATCCCATGCATCAAGTGTCTCTAATGCTCTTGCTACGTTTTTATATCGAATTAGTACTGAATTGACTTTGGATGCTAGGCTGTTTATTTACTTGCAGTTGTTAAGGCATATTGGTACGTTTGGGGTAAAAATTCCACTCGCTCTTCCTCGGTTCTTCTTCAGTTTCTTGCTTCACTTACAACCTGATATTTTAACTAATCTTGATGCTCCGAGCCCAATCCATGCACCTTATTAT

Protein sequence

MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLFIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSPIHAPYY

Homology

[Close]

BLAST of CSPI01G14880 vs. ExPASy TrEMBL
Match: A0A5D3DMD7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00510 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.7e-31
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARL 60
           +L+ WS+NGI AA+LS+KY ILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  
Sbjct: 368 ILSSWSVNGIPAAALSVKYAILHKIGIANWFPSSHASSVSAALGTFLYRICNDDKVDAGA 427

Query: 61  FIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           FIY QLLRH+G+FGVK+P+ALPRFF   LLHL   ILT+ DAP P
Sbjct: 428 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAILTSSDAPDP 472

[Close]

BLAST of CSPI01G14880 vs. ExPASy TrEMBL
Match: A0A1S3CS20 (uncharacterized protein LOC103504101 OS=Cucumis melo OX=3656 GN=LOC103504101 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.7e-31
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARL 60
           +L+ WS+NGI AA+LS+KY ILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  
Sbjct: 90  ILSSWSVNGIPAAALSVKYAILHKIGIANWFPSSHASSVSAALGTFLYRICNDDKVDAGA 149

Query: 61  FIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           FIY QLLRH+G+FGVK+P+ALPRFF   LLHL   ILT+ DAP P
Sbjct: 150 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAILTSSDAPDP 194

[Close]

BLAST of CSPI01G14880 vs. ExPASy TrEMBL
Match: A0A5D3B6A3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00060 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.1e-30
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L+IW +NGILA SLS+ YVILH+I IANWFPSSHAS++S AL TFLY+I  +  +DA LF
Sbjct: 140 LSIWPVNGILAISLSINYVILHKIDIANWFPSSHASNISIALGTFLYQICNDDLVDAGLF 199

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+GTFGVKI + LPRFF S L+HL  DILT  DAP P
Sbjct: 200 IYNQLLRHVGTFGVKIHIPLPRFFSSLLVHLNVDILTASDAPGP 243

[Close]

BLAST of CSPI01G14880 vs. ExPASy TrEMBL
Match: A0A5A7U8Y1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002030 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.0e-30
Identity = 70/104 (67.31%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L+ W +NGI A +LS+KYVILH+IGIANWFPSSHASSVS  L TFLY I  +  +DA  F
Sbjct: 462 LSSWPVNGIPAVALSVKYVILHKIGIANWFPSSHASSVSATLGTFLYHICNDDKVDAGAF 521

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+G+FGVK+P+ALPRFF S LLHL   +LT  DAPSP
Sbjct: 522 IYNQLLRHVGSFGVKLPIALPRFFSSLLLHLNAVVLTTSDAPSP 565

[Close]

BLAST of CSPI01G14880 vs. ExPASy TrEMBL
Match: A0A5D3DCR2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001170 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.0e-30
Identity = 70/104 (67.31%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L+ W +NGI A +LS+KYVILH+IGIANWFPSSHASSVS  L TFLY I  +  +DA  F
Sbjct: 616 LSSWPVNGIPAVALSVKYVILHKIGIANWFPSSHASSVSATLGTFLYHICNDDKVDAGAF 675

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+G+FGVK+P+ALPRFF S LLHL   +LT  DAPSP
Sbjct: 676 IYNQLLRHVGSFGVKLPIALPRFFSSLLLHLNAVVLTTSDAPSP 719

[Close]

BLAST of CSPI01G14880 vs. NCBI nr
Match: KAA0059849.1 (uncharacterized protein E6C27_scaffold108G001320 [Cucumis melo var. makuwa] >TYK24803.1 uncharacterized protein E5676_scaffold184G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 9.8e-31
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARL 60
           +L+ WS+NGI AA+LS+KY ILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  
Sbjct: 368 ILSSWSVNGIPAAALSVKYAILHKIGIANWFPSSHASSVSAALGTFLYRICNDDKVDAGA 427

Query: 61  FIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           FIY QLLRH+G+FGVK+P+ALPRFF   LLHL   ILT+ DAP P
Sbjct: 428 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAILTSSDAPDP 472

[Close]

BLAST of CSPI01G14880 vs. NCBI nr
Match: XP_008466770.1 (PREDICTED: uncharacterized protein LOC103504101 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 9.8e-31
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MLTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARL 60
           +L+ WS+NGI AA+LS+KY ILH+IGIANWFPSSHASSVS AL TFLYRI  +  +DA  
Sbjct: 90  ILSSWSVNGIPAAALSVKYAILHKIGIANWFPSSHASSVSAALGTFLYRICNDDKVDAGA 149

Query: 61  FIYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           FIY QLLRH+G+FGVK+P+ALPRFF   LLHL   ILT+ DAP P
Sbjct: 150 FIYNQLLRHVGSFGVKLPIALPRFFSGLLLHLNVAILTSSDAPDP 194

[Close]

BLAST of CSPI01G14880 vs. NCBI nr
Match: KAA0039633.1 (uncharacterized protein E6C27_scaffold744G001140 [Cucumis melo var. makuwa] >TYJ95520.1 uncharacterized protein E5676_scaffold767G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-30
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L+IW +NGILA SLS+ YVILH+I IANWFPSSHAS++S AL TFLY+I  +  +DA LF
Sbjct: 140 LSIWPVNGILAISLSINYVILHKIDIANWFPSSHASNISIALGTFLYQICNDDLVDAGLF 199

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+GTFGVKI + LPRFF S L+HL  DILT  DAP P
Sbjct: 200 IYNQLLRHVGTFGVKIHIPLPRFFSSLLVHLNVDILTASDAPGP 243

[Close]

BLAST of CSPI01G14880 vs. NCBI nr
Match: TYK21447.1 (uncharacterized protein E5676_scaffold609G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 8.3e-30
Identity = 70/104 (67.31%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L+ W +NGI A +LS+KYVILH+IGIANWFPSSHASSVS  L TFLY I  +  +DA  F
Sbjct: 616 LSSWPVNGIPAVALSVKYVILHKIGIANWFPSSHASSVSATLGTFLYHICNDDKVDAGAF 675

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+G+FGVK+P+ALPRFF S LLHL   +LT  DAPSP
Sbjct: 676 IYNQLLRHVGSFGVKLPIALPRFFSSLLLHLNAVVLTTSDAPSP 719

[Close]

BLAST of CSPI01G14880 vs. NCBI nr
Match: KAA0051794.1 (uncharacterized protein E6C27_scaffold60G002030 [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 8.3e-30
Identity = 70/104 (67.31%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 2   LTIWSINGILAASLSLKYVILHEIGIANWFPSSHASSVSNALATFLYRISTELTLDARLF 61
           L+ W +NGI A +LS+KYVILH+IGIANWFPSSHASSVS  L TFLY I  +  +DA  F
Sbjct: 462 LSSWPVNGIPAVALSVKYVILHKIGIANWFPSSHASSVSATLGTFLYHICNDDKVDAGAF 521

Query: 62  IYLQLLRHIGTFGVKIPLALPRFFFSFLLHLQPDILTNLDAPSP 106
           IY QLLRH+G+FGVK+P+ALPRFF S LLHL   +LT  DAPSP
Sbjct: 522 IYNQLLRHVGSFGVKLPIALPRFFSSLLLHLNAVVLTTSDAPSP 565

The following BLAST results are available for this feature:

BLAST of CSPI01G14880 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G14880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DMD7	4.7e-31	68.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CS20	4.7e-31	68.57	uncharacterized protein LOC103504101 OS=Cucumis melo OX=3656 GN=LOC103504101 PE=...	[more]
A0A5D3B6A3	3.1e-30	68.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U8Y1	4.0e-30	67.31	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3DCR2	4.0e-30	67.31	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]

BLAST of CSPI01G14880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059849.1	9.8e-31	68.57	uncharacterized protein E6C27_scaffold108G001320 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008466770.1	9.8e-31	68.57	PREDICTED: uncharacterized protein LOC103504101 [Cucumis melo]	[more]
KAA0039633.1	6.3e-30	68.27	uncharacterized protein E6C27_scaffold744G001140 [Cucumis melo var. makuwa] >TYJ...	[more]
TYK21447.1	8.3e-30	67.31	uncharacterized protein E5676_scaffold609G001170 [Cucumis melo var. makuwa]	[more]
KAA0051794.1	8.3e-30	67.31	uncharacterized protein E6C27_scaffold60G002030 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G14880 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14880.1	CSPI01G14880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane