CSPI01G14800 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G14800
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Reverse transcriptase
Location	Chr1: 10477172 .. 10477701 (-)
RNA-Seq Expression	CSPI01G14800
Synteny	CSPI01G14800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCGAGGAAGAGGACATGGACGACTAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCAGTAAATTCAAATGTTAAGAGAGTGATAGAAGAGGAGTTATATAATCGAGTGGTGCAAAATTAAAAGATAGTTTATCAAGAAAGCCGAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGCCAAAGAGTTTTCAAGAACAGTAGAACTAGAGCCGGCGAATAAGTGGTTAAGAGCATTGAAGAAGTGTTTTAGGGTACTGCAGTGCCCCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACCGGCAGGTGTTAGAAGAAAGTAGACGAGGCGAGGTGAATTGGGAGGAGTTTAAGGCAGTGTTTAATGAGAAGTATTTCTTAGAGACTTATAAAGAGGGGAGGCAAGATGAACTTTTCCACCTAGAGCAAGGTGAGCGAGGTCACAGAGTATGCGAAGAAGTTTATGGAGTTGGCTAA

mRNA sequence

ATGTTGCGAGGAAGAGGACATGGACGACTAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGCCAAAGAGTTTTCAAGAACAGTAGAACTAGAGCCGGCGAATAAGTGGTTAAGAGCATTGAAGAAGTGTTTTAGGGTACTGCAGTGCCCCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACCGGCAGGTGTTAGAAGAAAGTAGACGAGGCGAGGTGAATTGGGAGGAGTTTAAGGCAGTGTTTAATGAGAAGTATTTCTTAGAGACTTATAAAGAGGGGAGGCAAGATGAACTTTTCCACCTAGAGCAAGGTGAGCGAGGTCACAGAGTATGCGAAGAAGTTTATGGAGTTGGCTAA

Coding sequence (CDS)

ATGTTGCGAGGAAGAGGACATGGACGACTAGGGAGCAAGCCAAGCACAACAACTGAGCCCACTATGGACTCAGAGGCCCAGTCACCGAAGAAGAAGTATGGAATAGAGCAAGTCAAGGCATTTGGAGCCAAAGAGTTTTCAAGAACAGTAGAACTAGAGCCGGCGAATAAGTGGTTAAGAGCATTGAAGAAGTGTTTTAGGGTACTGCAGTGCCCCGAGGAGAGGAAGATTGACTTAGCAGCTTTCTTACTTCATAGGAAAGCAGAAGACCGGCAGGTGTTAGAAGAAAGTAGACGAGGCGAGGTGAATTGGGAGGAGTTTAAGGCAGTGTTTAATGAGAAGTATTTCTTAGAGACTTATAAAGAGGGGAGGCAAGATGAACTTTTCCACCTAGAGCAAGGTGAGCGAGGTCACAGAGTATGCGAAGAAGTTTATGGAGTTGGCTAA

Protein sequence

MLRGRGHGRLGSKPSTTTEPTMDSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFLLHRKAEDRQVLEESRRGEVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQGERGHRVCEEVYGVG*

Homology

[Close]

BLAST of CSPI01G14800 vs. ExPASy TrEMBL
Match: A0A0A0LVF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.1e-22
Identity = 59/80 (73.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 11  GSKPSTTTEPTMDSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQ 70
           G+  +    P         KKKYGIEQVKAFG KEFSRTVELE ANKWLRAL+KCFRVLQ
Sbjct: 35  GASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQ 94

Query: 71  CPEERKIDLAAFLLHRKAED 91
           C EERKIDLAAFLLHRKAED
Sbjct: 95  CLEERKIDLAAFLLHRKAED 114

[Close]

BLAST of CSPI01G14800 vs. ExPASy TrEMBL
Match: A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-20
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 23  DSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAF 82
           +S    PKKKYGIE++KA GA  F+ T        WL  ++KCFRV +CPE+RK++LAAF
Sbjct: 140 ESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAF 199

Query: 83  LLHRKAEDRQVLEESRR---GEVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           LL   AED   +EESRR   G+++W+EFK  F +K++  ++++ +++E   L QG
Sbjct: 200 LLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQG 254

[Close]

BLAST of CSPI01G14800 vs. ExPASy TrEMBL
Match: A0A5D3CTK6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00030 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-20
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 23  DSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAF 82
           +S    PKKKYGIE++KA GA  F+ T        WL  ++KCFRV +CPE+RK++LAAF
Sbjct: 176 ESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAF 235

Query: 83  LLHRKAEDRQVLEESRR---GEVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           LL   AED   +EESRR   G+++W+EFK  F +K++  ++++ +++E   L QG
Sbjct: 236 LLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQG 290

[Close]

BLAST of CSPI01G14800 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.9e-20
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 23  DSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAF 82
           +S    P+KKYGIE++KA GA  F+ T     A  WL  ++KCFRV +CPE+RK++LAAF
Sbjct: 46  ESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAF 105

Query: 83  LLHRKAEDRQVLEESRR---GEVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           LL   AED   +EESRR   G+++W EFK  F +K++  ++++ +++E   L QG
Sbjct: 106 LLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQG 160

[Close]

BLAST of CSPI01G14800 vs. ExPASy TrEMBL
Match: A0A5A7SRT9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold478G00220 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.9e-17
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 0


Query: 25  EAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAFLL 84
           E   P+K YGIE++K  GA  F  +++   A  WL  L+KCF V+ CPEERK+ LA FLL
Sbjct: 41  EPSDPEKAYGIERLKKLGATVFEGSIDPADAENWLNMLEKCFDVMNCPEERKVRLAIFLL 100

Query: 85  HRKAEDRQVLEESRRGE---VNWEEFKAVFNEKYFLETYKEGRQDELFHLEQGERGHRVC 144
            ++AE       +RR +   ++W+ F+ +F +KY+  TY + ++DE   L+QG      C
Sbjct: 101 QKEAEGWWKCILARRCDARALDWQNFRGIFEDKYYPSTYCKAKRDEFLGLKQGSLSVAEC 160

Query: 145 EEVY 146
           E  Y
Sbjct: 161 ERKY 164

[Close]

BLAST of CSPI01G14800 vs. NCBI nr
Match: KGN64939.1 (hypothetical protein Csa_022824 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 8.5e-22
Identity = 59/80 (73.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 11  GSKPSTTTEPTMDSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQ 70
           G+  +    P         KKKYGIEQVKAFG KEFSRTVELE ANKWLRAL+KCFRVLQ
Sbjct: 35  GASQAQQLSPLWTQRPSHRKKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQ 94

Query: 71  CPEERKIDLAAFLLHRKAED 91
           C EERKIDLAAFLLHRKAED
Sbjct: 95  CLEERKIDLAAFLLHRKAED 114

[Close]

BLAST of CSPI01G14800 vs. NCBI nr
Match: TYK15233.1 (uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-20
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 23  DSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAF 82
           +S    PKKKYGIE++KA GA  F+ T        WL  ++KCFRV +CPE+RK++LAAF
Sbjct: 176 ESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAF 235

Query: 83  LLHRKAEDRQVLEESRR---GEVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           LL   AED   +EESRR   G+++W+EFK  F +K++  ++++ +++E   L QG
Sbjct: 236 LLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQG 290

[Close]

BLAST of CSPI01G14800 vs. NCBI nr
Match: KAA0039476.1 (uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-20
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 23  DSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAF 82
           +S    PKKKYGIE++KA GA  F+ T        WL  ++KCFRV +CPE+RK++LAAF
Sbjct: 140 ESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAF 199

Query: 83  LLHRKAEDRQVLEESRR---GEVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           LL   AED   +EESRR   G+++W+EFK  F +K++  ++++ +++E   L QG
Sbjct: 200 LLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQG 254

[Close]

BLAST of CSPI01G14800 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 8.0e-20
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 23  DSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKIDLAAF 82
           +S    P+KKYGIE++KA GA  F+ T     A  WL  ++KCFRV +CPE+RK++LAAF
Sbjct: 46  ESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAF 105

Query: 83  LLHRKAEDRQVLEESRR---GEVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           LL   AED   +EESRR   G+++W EFK  F +K++  ++++ +++E   L QG
Sbjct: 106 LLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQG 160

[Close]

BLAST of CSPI01G14800 vs. NCBI nr
Match: XP_038877203.1 (uncharacterized protein LOC120069501 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-17
Identity = 46/119 (38.66%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 19  EPTMDSEAQSPKKKYGIEQVKAFGAKEFSRTVELEPANKWLRALKKCFRVLQCPEERKID 78
           + ++++    P+KKYGIE++KA GA  F  T +   A +W+  ++KCF+V++CP++RK+ 
Sbjct: 9   QASLENIQPDPEKKYGIERLKALGATNFEGTKDPADAEEWMNQIEKCFKVMRCPKKRKVS 68

Query: 79  LAAFLLHRKAEDRQVLEESRRG---EVNWEEFKAVFNEKYFLETYKEGRQDELFHLEQG 135
           LA FLL +K ED   L ++R+G   E+ WEEF+  F E+++  ++++ +QDE   + QG
Sbjct: 69  LATFLLQKKVEDWWKLLKNRKGDQEEICWEEFQKSFFERFYPRSFRDMKQDEFLQVMQG 127

The following BLAST results are available for this feature:

BLAST of CSPI01G14800 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G14800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVF8	4.1e-22	73.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1	[more]
A0A5A7TBS0	2.3e-20	45.22	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3CTK6	2.3e-20	45.22	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UZM6	3.9e-20	45.22	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7SRT9	8.9e-17	39.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold47...	[more]

BLAST of CSPI01G14800 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64939.1	8.5e-22	73.75	hypothetical protein Csa_022824 [Cucumis sativus]	[more]
TYK15233.1	4.7e-20	45.22	uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]	[more]
KAA0039476.1	4.7e-20	45.22	uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa]	[more]
KAA0060484.1	8.0e-20	45.22	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
XP_038877203.1	2.8e-17	38.66	uncharacterized protein LOC120069501 [Benincasa hispida]	[more]

BLAST of CSPI01G14800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14800.1	CSPI01G14800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process