CSPI01G14700 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G14700
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 10394023 .. 10394452 (-)
RNA-Seq Expression	CSPI01G14700
Synteny	CSPI01G14700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCATTTTGATGAGGGAGATGGTTAGAGAACAAATATGTTGAGAAGCAAATTAGTTGATTTTCATAGCAAAAGATAGAAAGAACATATAAACGAAGGAAGGAAATGGGGGAAGAGAAGCTTACAGAAAGAGAGAGGCAGCGGAGAAAGCAAGGACAGGAAATCAAAAGGGAGACGTAAGTGGTTGAAGGATGCGAATATTAGGGCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAGAAAGAGGAAGAAAAATGGCTTTTGGAGAATGGTGAAGGCCCAGAGGAGGAAGAGGGAAGAGGGGGGATGAATGGAGAATTTGCCATTTGCGAGGTTCGAAGAGGCGGAGAGTGAAGTAG

mRNA sequence

GGGCATTTTGATGAGGGAGATGGTTAGAGAACAAATATGTTGAGAAGCAAATTAGTTGATTTTCATAGCAAAAGATAGAAAGAACATATAAACGAAGGAAGGAAATGGGGGAAGAGAAGCTTACAGAAAGAGAGAGGCAGCGGAGAAAGCAAGGACAGGAAATCAAAAGGGAGACGCCCAGAGGAGGAAGAGGGAAGAGGGGGGATGAATGGAGAATTTGCCATTTGCGAGGTTCGAAGAGGCGGAGAGTGAAGTAG

Coding sequence (CDS)

ATGGGGGAAGAGAAGCTTACAGAAAGAGAGAGGCAGCGGAGAAAGCAAGGACAGGAAATCAAAAGGGAGACGCCCAGAGGAGGAAGAGGGAAGAGGGGGGATGAATGGAGAATTTGCCATTTGCGAGGTTCGAAGAGGCGGAGAGTGAAGTAG

Protein sequence

MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK*

Homology

[Close]

BLAST of CSPI01G14700 vs. ExPASy TrEMBL
Match: A0A0A0LSN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G163150 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 51
          MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK
Sbjct: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 50

[Close]

BLAST of CSPI01G14700 vs. NCBI nr
Match: KGN64930.1 (hypothetical protein Csa_022830 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 4.8e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 51
          MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK
Sbjct: 1  MGEEKLTERERQRRKQGQEIKRETPRGGRGKRGDEWRICHLRGSKRRRVK 50

The following BLAST results are available for this feature:

BLAST of CSPI01G14700 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G14700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSN7	2.3e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G163150 PE=4 SV=1	[more]

BLAST of CSPI01G14700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64930.1	4.8e-17	100.00	hypothetical protein Csa_022830 [Cucumis sativus]	[more]

BLAST of CSPI01G14700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14700.1	CSPI01G14700.1	mRNA