CSPI01G14370 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G14370
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Tudor domain-containing protein
Location	Chr1: 10032494 .. 10032824 (-)
RNA-Seq Expression	CSPI01G14370
Synteny	CSPI01G14370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGCCTTGGTTTCTGGTCGACTTCTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAATTAGGATCACTGCACCTAATGCCCCTTACAGTGACGAAAGTATGAAGGTAATCAGAAATTTGCTCGGTTGAATGCCATTTTCCCACTTATTTGAATTTACTTATGAATAGTTGAATGTATGTTGCTGTTCAGGAGGTGTTTCATCTTATAGTATCATCCTTTGAAAATATCTCTTACAAGTCAAGTCAATCATTGCGAAAAGGGCATCCATTCTTGAAACTGTCGCAAGGGTCAAATCATGTGTAG

mRNA sequence

ATGGAATGCCTTGGTTTCTGGTCGACTTCTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAATTAGGATCACTGCACCTAATGCCCCTTACAGTGACGAAAGTATGAAGGAGGTGTTTCATCTTATAGTATCATCCTTTGAAAATATCTCTTACAAGTCAAGTCAATCATTGCGAAAAGGGCATCCATTCTTGAAACTGTCGCAAGGGTCAAATCATGTGTAG

Coding sequence (CDS)

ATGGAATGCCTTGGTTTCTGGTCGACTTCTAGGCATTCAAATATTAATGTCAAAGTTGCAGTTGCAGCATGCGTTAGTGAAATAATTAGGATCACTGCACCTAATGCCCCTTACAGTGACGAAAGTATGAAGGAGGTGTTTCATCTTATAGTATCATCCTTTGAAAATATCTCTTACAAGTCAAGTCAATCATTGCGAAAAGGGCATCCATTCTTGAAACTGTCGCAAGGGTCAAATCATGTGTAG

Protein sequence

MECLGFWSTSRHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRKGHPFLKLSQGSNHV*

Homology

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BLAST of CSPI01G14370 vs. ExPASy Swiss-Prot
Match: Q04264 (Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PDS5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.3e-06
Identity = 17/47 (36.17%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 11  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENI 58
           +H ++ ++   A C+S+I+R+ AP+APY+D  + ++F L++S FE +
Sbjct: 66  KHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQL 112

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BLAST of CSPI01G14370 vs. ExPASy TrEMBL
Match: A0A5D3DA09 (Cytoplasmic tRNA 2-thiolation protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00390 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.4e-16
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 11 RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
          RHSNINVKVAVAACVSEI RI APNAPYSD +MKEVFHLIVSSFEN+S KSS+S  K
Sbjct: 19 RHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFENLSDKSSRSYVK 75

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BLAST of CSPI01G14370 vs. ExPASy TrEMBL
Match: A0A5A7TI13 (Protein starmaker OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G001460 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.4e-16
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 11 RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
          RHSNINVKVAVAACVSEI RI APNAPYSD +MKEVFHLIVSSFEN+S KSS+S  K
Sbjct: 19 RHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFENLSDKSSRSYVK 75

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BLAST of CSPI01G14370 vs. ExPASy TrEMBL
Match: A0A6J1KIV6 (protein starmaker-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496136 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 11  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
           RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Sbjct: 69  RHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVSSFENLSDKSSRSYAK 125

[Close]

BLAST of CSPI01G14370 vs. ExPASy TrEMBL
Match: A0A6J1BTE1 (uncharacterized protein DDB_G0284459 OS=Momordica charantia OX=3673 GN=LOC111005167 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 11  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
           RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Sbjct: 69  RHSDIHVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVSSFENLSDKSSRSYAK 125

[Close]

BLAST of CSPI01G14370 vs. ExPASy TrEMBL
Match: A0A6J1GHY4 (ABC transporter F family member 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454101 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-15
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 11  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
           RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Sbjct: 69  RHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVSSFENLSDKSSRSYAK 125

[Close]

BLAST of CSPI01G14370 vs. NCBI nr
Match: KAE8652798.1 (hypothetical protein Csa_022758 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 6.3e-35
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MECLGFWSTSRHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYK 60
          MECLGFWSTSRHSNINVKVAVAACVSEI RITAPNAPYSDESMKEVFHLIVSSFENISYK
Sbjct: 1  MECLGFWSTSRHSNINVKVAVAACVSEITRITAPNAPYSDESMKEVFHLIVSSFENISYK 60

Query: 61 SSQSLRKGHPFLKLSQGSNHV 82
          SSQSL+KGHPFLKLSQ S+HV
Sbjct: 61 SSQSLQKGHPFLKLSQRSDHV 81

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BLAST of CSPI01G14370 vs. NCBI nr
Match: TYK20310.1 (cytoplasmic tRNA 2-thiolation protein 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 11 RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
          RHSNINVKVAVAACVSEI RI APNAPYSD +MKEVFHLIVSSFEN+S KSS+S  K
Sbjct: 19 RHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFENLSDKSSRSYVK 75

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BLAST of CSPI01G14370 vs. NCBI nr
Match: KAA0040949.1 (protein starmaker [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 11 RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
          RHSNINVKVAVAACVSEI RI APNAPYSD +MKEVFHLIVSSFEN+S KSS+S  K
Sbjct: 19 RHSNINVKVAVAACVSEITRIIAPNAPYSDGNMKEVFHLIVSSFENLSDKSSRSYVK 75

[Close]

BLAST of CSPI01G14370 vs. NCBI nr
Match: XP_038884574.1 (titin homolog [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 11  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
           RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Sbjct: 69  RHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVSSFENLSDKSSRSYAK 125

[Close]

BLAST of CSPI01G14370 vs. NCBI nr
Match: XP_023537684.1 (protein starmaker-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 11  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
           RHS+I+VKVAVAAC+SEI RITAP+APY+DE MKEVFHLIVSSFEN+S KSS+S  K
Sbjct: 69  RHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVSSFENLSDKSSRSYAK 125

[Close]

BLAST of CSPI01G14370 vs. TAIR 10
Match: AT4G31880.1 (LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 7.0e-16
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 11  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
           +HS+++VKVAVAAC+SEI RITAP+APY D+ MKEVF LIVSSFE++  KSS+S  K
Sbjct: 69  KHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSSRSYAK 125

[Close]

BLAST of CSPI01G14370 vs. TAIR 10
Match: AT4G31880.2 (LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). )

HSP 1 Score: 80.5 bits (197), Expect = 7.0e-16
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 11  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
           +HS+++VKVAVAAC+SEI RITAP+APY D+ MKEVF LIVSSFE++  KSS+S  K
Sbjct: 69  KHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSSRSYAK 125

[Close]

BLAST of CSPI01G14370 vs. TAIR 10
Match: AT1G15940.1 (Tudor/PWWP/MBT superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-11
Identity = 28/63 (44.44%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 11  RHSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRKGHP 70
           R+ + +V+V+V +C++EI+RITAP APY+DE MK++F + + +FE ++  SS+S RK   
Sbjct: 73  RNPDSDVRVSVVSCLTEIMRITAPEAPYNDEQMKDIFQVTIEAFEKLADASSRSYRKAEV 132

Query: 71  FLK 74
            L+
Sbjct: 133 ILE 135

[Close]

BLAST of CSPI01G14370 vs. TAIR 10
Match: AT1G80810.1 (Tudor/PWWP/MBT superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-11
Identity = 27/56 (48.21%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 12 HSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
          H + +V+V+V +C++EI+RITAP  PYSD+ MKE+F L + +FE ++  SS+S +K
Sbjct: 20 HPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIEAFEKLADASSRSYKK 75

[Close]

BLAST of CSPI01G14370 vs. TAIR 10
Match: AT1G80810.2 (Tudor/PWWP/MBT superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-11
Identity = 27/56 (48.21%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 12 HSNINVKVAVAACVSEIIRITAPNAPYSDESMKEVFHLIVSSFENISYKSSQSLRK 68
          H + +V+V+V +C++EI+RITAP  PYSD+ MKE+F L + +FE ++  SS+S +K
Sbjct: 20 HPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIEAFEKLADASSRSYKK 75

The following BLAST results are available for this feature:

BLAST of CSPI01G14370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04264	8.3e-06	36.17	Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of CSPI01G14370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DA09	5.4e-16	84.21	Cytoplasmic tRNA 2-thiolation protein 1 isoform X2 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7TI13	5.4e-16	84.21	Protein starmaker OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G00...	[more]
A0A6J1KIV6	2.1e-15	78.95	protein starmaker-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496136 PE...	[more]
A0A6J1BTE1	2.1e-15	78.95	uncharacterized protein DDB_G0284459 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1GHY4	2.1e-15	78.95	ABC transporter F family member 4-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of CSPI01G14370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652798.1	6.3e-35	95.06	hypothetical protein Csa_022758 [Cucumis sativus]	[more]
TYK20310.1	1.1e-15	84.21	cytoplasmic tRNA 2-thiolation protein 1 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0040949.1	1.1e-15	84.21	protein starmaker [Cucumis melo var. makuwa]	[more]
XP_038884574.1	4.2e-15	78.95	titin homolog [Benincasa hispida]	[more]
XP_023537684.1	4.2e-15	78.95	protein starmaker-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI01G14370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31880.1	7.0e-16	68.42	LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED D...	[more]
AT4G31880.2	7.0e-16	68.42	LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 gro...	[more]
AT1G15940.1	3.0e-11	44.44	Tudor/PWWP/MBT superfamily protein	[more]
AT1G80810.1	6.8e-11	48.21	Tudor/PWWP/MBT superfamily protein	[more]
AT1G80810.2	6.8e-11	48.21	Tudor/PWWP/MBT superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039776	Sister chromatid cohesion protein Pds5	PANTHER	PTHR12663	ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED	coord: 10..67
None	No IPR available	PANTHER	PTHR12663:SF3	TRANSCRIPTIONAL REGULATOR	coord: 10..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14370.1	CSPI01G14370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0035825	homologous recombination
biological_process	GO:0009556	microsporogenesis
biological_process	GO:0007064	mitotic sister chromatid cohesion
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus