CSPI01G14180 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G14180
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ycf20-like protein isoform X1
Location	Chr1: 9772600 .. 9773177 (+)
RNA-Seq Expression	CSPI01G14180
Synteny	CSPI01G14180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCTTTGTGTTCTATGTATTAGTGACTCATCAGTTTAAGCAAAATACTCTTTAATGATCTCAGGTTCTCAACATTTTTTTATACAGCCGTCTAGGAAGTGAAACCTTCAATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAAGTCCTTCGAGGAGGGCCCTTTTTGGATGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAAAATATCTCATTGTCATTTGGAGCTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

mRNA sequence

AGCCTTTGTGTTCTATGTATTAGTGACTCATCAGTTTAAGCAAAATACTCTTTAATGATCTCAGGTTCTCAACATTTTTTTATACAGCCGTCTAGGAAGTGAAACCTTCAATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAACTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Coding sequence (CDS)

ATGGCACAATATGCTAGTTTAGTCCATACTAGCCTCTTAAATTATGGCTTTACTCACAAAATGAATCCTTCATATTGGAGATATGATATGGTTAAATCACGACCTTCCCCTCAACGTAGCTTTCGTGTCAAAGTTGTGCAAGATACCGAAGGTCCTAGTAGGATAGTTGATATCATTAGACTCGTGCCTGAGCTCTCAAGAAATTACTTTAGAACTTTTGGAGTAAATGATGTTTTTGCTACTGTGGTATGCATTCTCCTCACCGATGTTACTCGATTTTATTACAATCGACCAAAGGTAACTTTCCCCATTGCTCTACTGAACAACTTCAAAATGGGTTTCACTTGTGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIRLVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS*

Homology

[Close]

BLAST of CSPI01G14180 vs. ExPASy TrEMBL
Match: A0A0A0LV86 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144320 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR
Sbjct: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60

Query: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120
           LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI
Sbjct: 61  LVPELSRNYFRTFGVNDVFATVVCILLTDVTRFYYNRPKVTFPIALLNNFKMGFTCGLFI 120

Query: 121 DAFKL 126
           DAFKL
Sbjct: 121 DAFKL 125

[Close]

BLAST of CSPI01G14180 vs. ExPASy TrEMBL
Match: A0A0A0KPS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 112/156 (71.79%), Postives = 117/156 (75.00%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CSPI01G14180 vs. ExPASy TrEMBL
Match: A0A1S3CT33 (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.9e-48
Identity = 108/156 (69.23%), Postives = 114/156 (73.08%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CSPI01G14180 vs. ExPASy TrEMBL
Match: A0A6J1I440 (uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.1e-43
Identity = 100/156 (64.10%), Postives = 110/156 (70.51%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLV T LLNY FT + N SYWRYD++KSRPSP RS  +K VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLGIKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CSPI01G14180 vs. ExPASy TrEMBL
Match: A0A6J1ESY7 (uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 100/156 (64.10%), Postives = 110/156 (70.51%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLV T LLNY FT + N SYWRYD++KSRPSP RS  +K VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CSPI01G14180 vs. NCBI nr
Match: XP_004143642.1 (uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein Csa_000018 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 2.2e-50
Identity = 112/156 (71.79%), Postives = 117/156 (75.00%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLVHTSLLNYGFT KMNPSYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CSPI01G14180 vs. NCBI nr
Match: XP_008467245.1 (PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 5.9e-48
Identity = 108/156 (69.23%), Postives = 114/156 (73.08%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ  SLVHT LLNYGF+ KMN SYWRYDMVKSRPSP RSFRVK VQDT GP R+VDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of CSPI01G14180 vs. NCBI nr
Match: XP_038874767.1 (uncharacterized protein ycf20 [Benincasa hispida] >XP_038874768.1 uncharacterized protein ycf20 [Benincasa hispida])

HSP 1 Score: 188.7 bits (478), Expect = 3.1e-44
Identity = 105/156 (67.31%), Postives = 111/156 (71.15%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLVHTSLLNYGFT    P YWRYDM KSRPSP RS R+K VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFT----PKYWRYDMTKSRPSP-RSVRIKAVQDTSGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 151

[Close]

BLAST of CSPI01G14180 vs. NCBI nr
Match: KAG6579671.1 (hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 100/156 (64.10%), Postives = 110/156 (70.51%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLV T LLNY FT + N SYWRYDM+KSRPSP RS  +K VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDMIKSRPSP-RSLCIKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPE+SRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CSPI01G14180 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 100/156 (64.10%), Postives = 110/156 (70.51%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPSRIVDIIR 60
           MAQ ASLV T LLNY FT + N SYWRYD++KSRPSP RS  +K VQDT GP R+VDIIR
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSP-RSLGIKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRT----------------------------FGVNDVFATVVCILLTD-VT 120
           LVPELSRNYFR+                             GVNDV A VVC+LLT+ VT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           RFYY+RPKVTFP+ALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of CSPI01G14180 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 70/158 (44.30%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 1   MAQYASLVHTSLLNYGFTHKMNPSYWRYDMVKSRPSPQRSFRVKVVQDTEGPS--RIVDI 60
           MA   S + T+L +    H    S+  +     +   + +  ++ +Q+TEGP+  R++DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 61  IRLVPELSRNYFR----------------------------TFGVNDVFATVVCILLTD- 120
           IR VPE+SRNYF+                              GVNDV A V+C+LLT+ 
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 120

Query: 121 VTRFYYNRPKVTFPIALLNNFKMGFTCGLFIDAFKLAS 128
           VTRFYY+R  VTFPIALLNNFKMGFT GLFIDAFKLAS
Sbjct: 121 VTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

The following BLAST results are available for this feature:

BLAST of CSPI01G14180 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G14180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV86	1.5e-65	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144320 PE=3 SV=1	[more]
A0A0A0KPS1	1.1e-50	71.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1	[more]
A0A1S3CT33	2.9e-48	69.23	uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644...	[more]
A0A6J1I440	8.1e-43	64.10	uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 S...	[more]
A0A6J1ESY7	1.1e-42	64.10	uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3...	[more]

BLAST of CSPI01G14180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143642.1	2.2e-50	71.79	uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein...	[more]
XP_008467245.1	5.9e-48	69.23	PREDICTED: uncharacterized protein ycf20 isoform X1 [Cucumis melo]	[more]
XP_038874767.1	3.1e-44	67.31	uncharacterized protein ycf20 [Benincasa hispida] >XP_038874768.1 uncharacterize...	[more]
KAG6579671.1	1.3e-42	64.10	hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969949.1	1.7e-42	64.10	uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized...	[more]

BLAST of CSPI01G14180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43050.1	1.1e-26	44.30	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 74..127 e-value: 9.9E-12 score: 45.1
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..72
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 73..127
None	No IPR available	PANTHER	PTHR33787:SF5	YCF20-LIKE PROTEIN	coord: 1..72 coord: 73..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14180.1	CSPI01G14180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane