CSPI01G13460 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G13460
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRrna intron-encoded homing endonuclease
LocationChr1: 8951927 .. 8952416 (+)
RNA-Seq ExpressionCSPI01G13460
SyntenyCSPI01G13460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

mRNA sequence

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Coding sequence (CDS)

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCTGCCTGCGACGTCGCGAGAAGTCCACTGAACCTTATCATTTAG

Protein sequence

MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII*
Homology
[Close]
BLAST of CSPI01G13460 vs. ExPASy TrEMBL
Match: A0A5C7H450 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024292 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 99

[Close]
BLAST of CSPI01G13460 vs. ExPASy TrEMBL
Match: A0A2P5W8Y1 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33147 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.2e-47
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYTEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGS RRGRFAA DVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSWRRGRFAARDVARSPLNLII 99

[Close]
BLAST of CSPI01G13460 vs. ExPASy TrEMBL
Match: A0A6A5LDC5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00012867 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRRGRFAA DV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRGRFAAGDVVRSPLNLII 99

[Close]
BLAST of CSPI01G13460 vs. ExPASy TrEMBL
Match: A0A0R0GQW8 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G012700 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 93/99 (93.94%), Postives = 93/99 (93.94%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLL SY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRR RFAA DV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRERFAARDVVRSPLNLII 99

[Close]
BLAST of CSPI01G13460 vs. ExPASy TrEMBL
Match: A0A4U5PNX9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 98/117 (83.76%), Postives = 98/117 (83.76%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYA------------------EIIAIVGLQR 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYA                  EIIAIVGLQR
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMAFQAKEIIAIVGLQR 60

Query: 61  GIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           GIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAA DVARSPLNLII
Sbjct: 61  GIPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAAGDVARSPLNLII 117

[Close]
BLAST of CSPI01G13460 vs. NCBI nr
Match: TXG51768.1 (hypothetical protein EZV62_024292 [Acer yangbiense])

HSP 1 Score: 205.3 bits (521), Expect = 2.5e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 99

[Close]
BLAST of CSPI01G13460 vs. NCBI nr
Match: KAG8365712.1 (hypothetical protein BUALT_Bualt17G0000400 [Buddleja alternifolia] >KAG8375834.1 hypothetical protein BUALT_Bualt09G0000200 [Buddleja alternifolia] >KAG8375839.1 hypothetical protein BUALT_Bualt09G0000800 [Buddleja alternifolia])

HSP 1 Score: 200.7 bits (509), Expect = 6.1e-48
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGSRRRGRFAA DVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAARDVARSPLNLII 99

[Close]
BLAST of CSPI01G13460 vs. NCBI nr
Match: PPR87549.1 (hypothetical protein GOBAR_AA33147 [Gossypium barbadense])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 96/99 (96.97%), Postives = 96/99 (96.97%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYTEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFGS RRGRFAA DVARSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGSWRRGRFAARDVARSPLNLII 99

[Close]
BLAST of CSPI01G13460 vs. NCBI nr
Match: KAF1854983.1 (hypothetical protein Lal_00045103 [Lupinus albus] >KAF1854985.1 hypothetical protein Lal_00045105 [Lupinus albus] >KAF1855099.1 hypothetical protein Lal_00045011 [Lupinus albus] >KAF1855100.1 hypothetical protein Lal_00045012 [Lupinus albus] >KAF1855144.1 hypothetical protein Lal_00046614 [Lupinus albus])

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-46
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLLTSY EIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRRGRFAA DV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRGRFAAGDVVRSPLNLII 99

[Close]
BLAST of CSPI01G13460 vs. NCBI nr
Match: TKY45627.1 (hypothetical protein E2542_SST30377 [Spatholobus suberectus] >TKY68243.1 hypothetical protein E2542_SST04478 [Spatholobus suberectus])

HSP 1 Score: 194.9 bits (494), Expect = 3.3e-46
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60
           MGGGAWPFLVGGAICLVNSVNERDLSLL SYAEIIAIVGLQRGIPSKRESSARVDYVPAL
Sbjct: 1   MGGGAWPFLVGGAICLVNSVNERDLSLLNSYAEIIAIVGLQRGIPSKRESSARVDYVPAL 60

Query: 61  CTHRPSLLPIEWSGEVFGSRRRGRFAACDVARSPLNLII 100
           CTHRPSLLPIEWSGEVFG RRRGRFAA DV RSPLNLII
Sbjct: 61  CTHRPSLLPIEWSGEVFGLRRRGRFAARDVVRSPLNLII 99

The following BLAST results are available for this feature:
BLAST of CSPI01G13460 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G13460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5C7H4501.2e-49100.00Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024292 PE=4 SV=1[more]
A0A2P5W8Y17.2e-4796.97Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33147 PE=4 SV... [more]
A0A6A5LDC51.2e-4695.96Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00012867 PE=4 SV=1[more]
A0A0R0GQW84.0e-4593.94Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G012700 PE=4 SV=1[more]
A0A4U5PNX96.8e-4583.76Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1[more]
BLAST of CSPI01G13460 vs. NCBI nr
Match NameE-valueIdentityDescription
TXG51768.12.5e-49100.00hypothetical protein EZV62_024292 [Acer yangbiense][more]
KAG8365712.16.1e-4898.99hypothetical protein BUALT_Bualt17G0000400 [Buddleja alternifolia] >KAG8375834.1... [more]
PPR87549.11.5e-4696.97hypothetical protein GOBAR_AA33147 [Gossypium barbadense][more]
KAF1854983.12.5e-4695.96hypothetical protein Lal_00045103 [Lupinus albus] >KAF1854985.1 hypothetical pro... [more]
TKY45627.13.3e-4695.96hypothetical protein E2542_SST30377 [Spatholobus suberectus] >TKY68243.1 hypothe... [more]
BLAST of CSPI01G13460 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13460.1CSPI01G13460.1mRNA