CSPI01G13310 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G13310
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 8784236 .. 8784478 (+)
RNA-Seq Expression	CSPI01G13310
Synteny	CSPI01G13310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACTGCTGCCGAAACTTTGGTGGGCTCGTGGTTCATTGTGCTCCACACATTCTTCCCCACTTCCCAAAGGGAGAGGATGCAGCAACGACTGGTGAAATCAAACAAAGAAGAAGGAAGAGATAATATGGAAAGAAAGATGGAAATTAGACAGAGAGAGAGAGAGGAGAGGAAGGTTGGGTTTGAATCAGGGAAGAAGGAAGAGAGGGAGAGTTGGGTAAATAATGATTTGGGGAAATGA

mRNA sequence

ATGGTCACTGCTGCCGAAACTTTGGTGGGCTCGTGGTTCATTGTGCTCCACACATTCTTCCCCACTTCCCAAAGGGAGAGGATGCAGCAACGACTGGTGAAATCAAACAAAGAAGAAGGAAGAGATAATATGGAAAGAAAGATGGAAATTAGACAGAGAGAGAGAGAGGAGAGGAAGGTTGGGTTTGAATCAGGGAAGAAGGAAGAGAGGGAGAGTTGGGTAAATAATGATTTGGGGAAATGA

Coding sequence (CDS)

ATGGTCACTGCTGCCGAAACTTTGGTGGGCTCGTGGTTCATTGTGCTCCACACATTCTTCCCCACTTCCCAAAGGGAGAGGATGCAGCAACGACTGGTGAAATCAAACAAAGAAGAAGGAAGAGATAATATGGAAAGAAAGATGGAAATTAGACAGAGAGAGAGAGAGGAGAGGAAGGTTGGGTTTGAATCAGGGAAGAAGGAAGAGAGGGAGAGTTGGGTAAATAATGATTTGGGGAAATGA

Protein sequence

MVTAAETLVGSWFIVLHTFFPTSQRERMQQRLVKSNKEEGRDNMERKMEIRQREREERKVGFESGKKEERESWVNNDLGK*

Homology

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BLAST of CSPI01G13310 vs. NCBI nr
Match: KAE8652757.1 (hypothetical protein Csa_023782 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MVTAAETLVGSWFIVLHTFFPTSQRERMQQRLVKSNKEEGRDNMERKMEIRQREREE 58
          MVTAAETLVGSWFIV HTFFPTSQRERMQQRL+KSNKEEGRDNMERKMEIRQRER E
Sbjct: 1  MVTAAETLVGSWFIVFHTFFPTSQRERMQQRLLKSNKEEGRDNMERKMEIRQRERGE 57

The following BLAST results are available for this feature:

BLAST of CSPI01G13310 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G13310 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G13310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652757.1	4.1e-18	94.74	hypothetical protein Csa_023782 [Cucumis sativus]	[more]

BLAST of CSPI01G13310 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13310.1	CSPI01G13310.1	mRNA