CSPI01G12520 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G12520
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 7968076 .. 7968919 (+)
RNA-Seq Expression	CSPI01G12520
Synteny	CSPI01G12520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTCTTTCTCTTTAAAAGCCCATTTCATTTTCTTTAATTTCCCCATTTCCTAAGGTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCTTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACCATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTTATTTGTTAAATGTATAATTCTTGAGACCCCCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTTACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTAAAAACACTCTCTGTTCAGTTCAAAACGAGATCGCAAGGGTGAAAAACAGTGTATTTTGAATTCAAAACTGTGAAACGGAATGCAATTTGTCATTATAAATTGGGCC

mRNA sequence

CTCTTCTTTCTCTTTAAAAGCCCATTTCATTTTCTTTAATTTCCCCATTTCCTAAGGTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCTTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACCATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTTATTTGTTAAATGTATAATTCTTGAGACCCCCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTTACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTAAAAACACTCTCTGTTCAGTTCAAAACGAGATCGCAAGGGTGAAAAACAGTGTATTTTGAATTCAAAACTGTGAAACGGAATGCAATTTGTCATTATAAATTGGGCC

Coding sequence (CDS)

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Protein sequence

MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTSTSTTPAPGTSGYNSEAQPES*

Homology

[Close]

BLAST of CSPI01G12520 vs. ExPASy TrEMBL
Match: A0A0A0LV79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP    TSTSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP----TSTSTS 60

Query: 61 TSTTPAPGTSGYNSEAQPES 81
          TSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTTPAPGTSGYNSEAQPES 76

[Close]

BLAST of CSPI01G12520 vs. ExPASy TrEMBL
Match: A0A5D3CDP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74032G00010 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23
Identity = 66/80 (82.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNS K+PRKR  EFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDE        T TS
Sbjct: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDE--------TLTS 60

Query: 61 TSTTPAPGTSGYNSEAQPES 81
          TSTTPAPGTSGYNSEAQ ES
Sbjct: 61 TSTTPAPGTSGYNSEAQSES 72

[Close]

BLAST of CSPI01G12520 vs. NCBI nr
Match: KAE8652730.1 (hypothetical protein Csa_013247 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 5.5e-31
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP--TSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP  TSTSTSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60

Query: 61 TSTSTTPAPGTSGYNSEAQPES 81
          TSTSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTSTTPAPGTSGYNSEAQPES 82

[Close]

BLAST of CSPI01G12520 vs. NCBI nr
Match: TYK08469.1 (hypothetical protein E5676_scaffold74032G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 7.1e-23
Identity = 66/80 (82.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNS K+PRKR  EFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDE        T TS
Sbjct: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDE--------TLTS 60

Query: 61 TSTTPAPGTSGYNSEAQPES 81
          TSTTPAPGTSGYNSEAQ ES
Sbjct: 61 TSTTPAPGTSGYNSEAQSES 72

[Close]

BLAST of CSPI01G12520 vs. NCBI nr
Match: KAG6607199.1 (hypothetical protein SDJN03_00541, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 5   KDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTSTSTT 64
           K P++R +E PPRRG I I IF+SIFRT K +PEGF   RR++E        + T +  T
Sbjct: 51  KAPKRRFSELPPRRGQILIGIFKSIFRTGKPMPEGFESDRRKNE--------SLTLSPIT 110

Query: 65  PAPGTSGYNSEAQPES 81
           PA  +SGYNSE Q ES
Sbjct: 111 PATNSSGYNSEVQSES 118

[Close]

BLAST of CSPI01G12520 vs. NCBI nr
Match: KAG6583473.1 (hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 37/76 (48.68%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNS+ D +KR  E PPRRG + I IFRSIF+TVK       RSRR               
Sbjct: 1  MNSVTDQKKRLTELPPRRGKVMINIFRSIFKTVK-------RSRR--------------- 50

Query: 61 TSTTPAPGTSGYNSEA 77
              PAPG+SGYNSEA
Sbjct: 61 ----PAPGSSGYNSEA 50

The following BLAST results are available for this feature:

BLAST of CSPI01G12520 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G12520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV79	1.4e-29	95.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1	[more]
A0A5D3CDP6	3.5e-23	82.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI01G12520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652730.1	5.5e-31	97.56	hypothetical protein Csa_013247 [Cucumis sativus]	[more]
TYK08469.1	7.1e-23	82.50	hypothetical protein E5676_scaffold74032G00010 [Cucumis melo var. makuwa]	[more]
KAG6607199.1	1.2e-06	51.32	hypothetical protein SDJN03_00541, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6583473.1	3.9e-05	48.68	hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI01G12520 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G12520.1	CSPI01G12520.1	mRNA