CSPI01G12520 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G12520
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 7968076 .. 7968919 (+)
RNA-Seq ExpressionCSPI01G12520
SyntenyCSPI01G12520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTCTTTCTCTTTAAAAGCCCATTTCATTTTCTTTAATTTCCCCATTTCCTAAGGTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCTTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACCATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTTATTTGTTAAATGTATAATTCTTGAGACCCCCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTTACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTAAAAACACTCTCTGTTCAGTTCAAAACGAGATCGCAAGGGTGAAAAACAGTGTATTTTGAATTCAAAACTGTGAAACGGAATGCAATTTGTCATTATAAATTGGGCC

mRNA sequence

CTCTTCTTTCTCTTTAAAAGCCCATTTCATTTTCTTTAATTTCCCCATTTCCTAAGGTTCAAACAAGCTCAACCGCTGCCGTCAAATCCCCACATTCTCGGCCGCCTTCTTACTCCTTCACTCAATTTCCATTTCTTCCACCTATTCCCTCCATTTCAATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGAGGAAGAGTTCCTGAGTCGATCGGAATCATGAACTTGCTCTTTGAATTTGTGGCCAATTTTTTATCGGGGTCTCGCTACCTACCTATGAACTTCACACCATAACCATAAACTTTTCCCTTTCTTCTTCTTCTTTAAAATTCTTTTTGTTTTTATTTGTTAAATGTATAATTCTTGAGACCCCCGTTTCTGTTGATTTAGGCTTAGATTGTAATTAATTTTAATTACACTATAATTTTTTTACACAACTTGAGTGGATCTTGTCTCTTGTTATGTGGATATTGTATTTGGAATTTTGGGAAGAATGTTTGAAAATTACCCATTGAATTAGATCGAGCTAAAAACACTCTCTGTTCAGTTCAAAACGAGATCGCAAGGGTGAAAAACAGTGTATTTTGAATTCAAAACTGTGAAACGGAATGCAATTTGTCATTATAAATTGGGCC

Coding sequence (CDS)

ATGAATTCCATCAAGGACCCGAGGAAGCGGCAGGCGGAATTCCCGCCTCGACGGGGTTTGATCAAGATCAAGATCTTCCGGAGCATTTTCAGGACGGTCAAATCCATACCGGAAGGATTCGCAAGAAGCCGGCGGGAAGACGAAACTCCAACTTCCACTTCCACTTCCACTTCCACTTCAACTTCGACAACGCCGGCTCCAGGTACTAGCGGGTATAACTCGGAAGCTCAGCCCGAGTCATGA

Protein sequence

MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTSTSTTPAPGTSGYNSEAQPES*
Homology
BLAST of CSPI01G12520 vs. ExPASy TrEMBL
Match: A0A0A0LV79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP    TSTSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP----TSTSTS 60

Query: 61 TSTTPAPGTSGYNSEAQPES 81
          TSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTTPAPGTSGYNSEAQPES 76

BLAST of CSPI01G12520 vs. ExPASy TrEMBL
Match: A0A5D3CDP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74032G00010 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23
Identity = 66/80 (82.50%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNS K+PRKR  EFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDE        T TS
Sbjct: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDE--------TLTS 60

Query: 61 TSTTPAPGTSGYNSEAQPES 81
          TSTTPAPGTSGYNSEAQ ES
Sbjct: 61 TSTTPAPGTSGYNSEAQSES 72

BLAST of CSPI01G12520 vs. NCBI nr
Match: KAE8652730.1 (hypothetical protein Csa_013247 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 5.5e-31
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP--TSTSTSTS 60
          MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETP  TSTSTSTS
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60

Query: 61 TSTSTTPAPGTSGYNSEAQPES 81
          TSTSTTPAPGTSGYNSEAQPES
Sbjct: 61 TSTSTTPAPGTSGYNSEAQPES 82

BLAST of CSPI01G12520 vs. NCBI nr
Match: TYK08469.1 (hypothetical protein E5676_scaffold74032G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 7.1e-23
Identity = 66/80 (82.50%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNS K+PRKR  EFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDE        T TS
Sbjct: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDE--------TLTS 60

Query: 61 TSTTPAPGTSGYNSEAQPES 81
          TSTTPAPGTSGYNSEAQ ES
Sbjct: 61 TSTTPAPGTSGYNSEAQSES 72

BLAST of CSPI01G12520 vs. NCBI nr
Match: KAG6607199.1 (hypothetical protein SDJN03_00541, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 5   KDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTSTSTT 64
           K P++R +E PPRRG I I IF+SIFRT K +PEGF   RR++E        + T +  T
Sbjct: 51  KAPKRRFSELPPRRGQILIGIFKSIFRTGKPMPEGFESDRRKNE--------SLTLSPIT 110

Query: 65  PAPGTSGYNSEAQPES 81
           PA  +SGYNSE Q ES
Sbjct: 111 PATNSSGYNSEVQSES 118

BLAST of CSPI01G12520 vs. NCBI nr
Match: KAG6583473.1 (hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 37/76 (48.68%), Postives = 42/76 (55.26%), Query Frame = 0

Query: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60
          MNS+ D +KR  E PPRRG + I IFRSIF+TVK       RSRR               
Sbjct: 1  MNSVTDQKKRLTELPPRRGKVMINIFRSIFKTVK-------RSRR--------------- 50

Query: 61 TSTTPAPGTSGYNSEA 77
              PAPG+SGYNSEA
Sbjct: 61 ----PAPGSSGYNSEA 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LV791.4e-2995.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1[more]
A0A5D3CDP63.5e-2382.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAE8652730.15.5e-3197.56hypothetical protein Csa_013247 [Cucumis sativus][more]
TYK08469.17.1e-2382.50hypothetical protein E5676_scaffold74032G00010 [Cucumis melo var. makuwa][more]
KAG6607199.11.2e-0651.32hypothetical protein SDJN03_00541, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583473.13.9e-0548.68hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G12520.1CSPI01G12520.1mRNA