CSPI01G11330 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G11330
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein TIC 100
Location	Chr1: 7044348 .. 7044732 (+)
RNA-Seq Expression	CSPI01G11330
Synteny	CSPI01G11330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGCTTGATGAAGATTCTACTTCATCAACCAACTTAGAGAAAAAAGCATCACTCGAAGAGGAAAGGAAAGAAGAAGACGACGACAACGACGAGGAAGTTGATGACGCTCCACCGTCCAGTTTTGGTTCTATTGCAGCCGATCTAGACCCATCAAAGGACCAGAAGCCAAACAAGCCAAGAGATTCACCATTTAAAACGGTCCCAAGCCTATGTTTAAACAGATTGAACATGTTGCGACAGATGAGGTTTTGTCGTCCGGTAGATGAGGTTGCGGCGACGCTGAAGTGAAGAGACAAGCACGAGGGACTGTGACGGTGACAGGATTGAGCGTCGTCCGGAGATGGGCTTCTTCGCATTTGGAGGTGGCTTGTTCGTGTGA

mRNA sequence

ATGGGTTTGCTTGATGAAGATTCTACTTCATCAACCAACTTAGAGAAAAAAGCATCACTCGAAGAGGAAAGGAAAGAAGAAGACGACGACAACGACGAGGAAGTTGATGACGCTCCACCGTCCAGTTTTGGTTCTATTGCAGCCGATCTAGACCCATCAAAGGACCAGAAGCCAAACAAGCCAAGAGATTCACCATTTAAAACGGTCCCAAGCCTATGTTTAAACAGATTGAACATGTTGCGACAGATGAGGTTTTGTCGTCCGGTAGATGAGGTTGCGGCGACGCTGAAGATTGAGCGTCGTCCGGAGATGGGCTTCTTCGCATTTGGAGGTGGCTTGTTCGTGTGA

Coding sequence (CDS)

ATGGGTTTGCTTGATGAAGATTCTACTTCATCAACCAACTTAGAGAAAAAAGCATCACTCGAAGAGGAAAGGAAAGAAGAAGACGACGACAACGACGAGGAAGTTGATGACGCTCCACCGTCCAGTTTTGGTTCTATTGCAGCCGATCTAGACCCATCAAAGGACCAGAAGCCAAACAAGCCAAGAGATTCACCATTTAAAACGGTCCCAAGCCTATGTTTAAACAGATTGAACATGTTGCGACAGATGAGGTTTTGTCGTCCGGTAGATGAGGTTGCGGCGACGCTGAAGATTGAGCGTCGTCCGGAGATGGGCTTCTTCGCATTTGGAGGTGGCTTGTTCGTGTGA

Protein sequence

MGLLDEDSTSSTNLEKKASLEEERKEEDDDNDEEVDDAPPSSFGSIAADLDPSKDQKPNKPRDSPFKTVPSLCLNRLNMLRQMRFCRPVDEVAATLKIERRPEMGFFAFGGGLFV*

Homology

[Close]

BLAST of CSPI01G11330 vs. ExPASy TrEMBL
Match: A0A5A7SW35 (Protein TIC 100 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00240 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-18
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1   MGLLDEDSTSSTNLEKKASLEEERKEEDDDNDEEVDDAPPSSFGSIAADLDPSKDQKPNK 60
           MGLLDEDSTSSTNL+KKAS+EEE +EEDD +DE+  DAPPSSFGSIAAD DPSKDQKPNK
Sbjct: 911 MGLLDEDSTSSTNLDKKASVEEEDEEEDDYDDEDTFDAPPSSFGSIAADQDPSKDQKPNK 970

Query: 61  PRDSPFKT 69
           P +SPF T
Sbjct: 971 PTNSPFST 978

[Close]

BLAST of CSPI01G11330 vs. ExPASy TrEMBL
Match: A0A1S3C8V4 (protein TIC 100 OS=Cucumis melo OX=3656 GN=LOC103497973 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-18
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1   MGLLDEDSTSSTNLEKKASLEEERKEEDDDNDEEVDDAPPSSFGSIAADLDPSKDQKPNK 60
           MGLLDEDSTSSTNL+KKAS+EEE +EEDD +DE+  DAPPSSFGSIAAD DPSKDQKPNK
Sbjct: 643 MGLLDEDSTSSTNLDKKASVEEEDEEEDDYDDEDTFDAPPSSFGSIAADQDPSKDQKPNK 702

Query: 61  PRDSPFKT 69
           P +SPF T
Sbjct: 703 PTNSPFST 710

[Close]

BLAST of CSPI01G11330 vs. ExPASy TrEMBL
Match: A0A0A0KDJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G150580 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1   MGLLDEDSTSSTNLEKKASLEEERKEE---DDDNDEEVDDAPPSSFGSIAADLDPSKDQK 60
           MGLL +DSTSSTNLE KAS+EEE +EE   D D+DE+ DDAPPSSFGSIAA  DPSKDQK
Sbjct: 628 MGLLGKDSTSSTNLETKASVEEEGEEENNYDYDDDEDADDAPPSSFGSIAAYQDPSKDQK 687

Query: 61  PNKPRDSPFKT 69
           PNKPRDS F T
Sbjct: 688 PNKPRDSSFST 698

[Close]

BLAST of CSPI01G11330 vs. ExPASy TrEMBL
Match: A0A6J1CHZ6 (protein TIC 100 OS=Momordica charantia OX=3673 GN=LOC111011109 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.2e-14
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1   MGLLDEDSTSSTNLEKKASL-----EEERKEEDDDNDEEVDDAPPSSFGSIAADLDPSKD 60
           M LLDED  SSTN +KKAS+     EEE +EE+DD++++VDDAPPSSFGS++AD D SKD
Sbjct: 640 MDLLDEDVPSSTNQDKKASVEEGAEEEEEEEEEDDDNDDVDDAPPSSFGSVSADRDLSKD 699

Query: 61  QKPNKPRDSPFKT 69
           QKP KPRDSPF T
Sbjct: 700 QKPKKPRDSPFST 712

[Close]

BLAST of CSPI01G11330 vs. ExPASy TrEMBL
Match: A0A6J1H060 (protein TIC 100 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459216 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.2e-10
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 2   GLLDEDSTSSTNLEKKASLEEERKEEDDDNDEEVDDAPPSSFGSIAADL-DPSKDQKPNK 61
           GLLDED TSSTN +KKAS+EEE ++++DD+D++VDD+PPSSF +  +     S DQKP+K
Sbjct: 637 GLLDEDVTSSTNQDKKASVEEEGEDDEDDDDDDVDDSPPSSFDAPPSSFGSVSADQKPSK 696

Query: 62  PRDSPFKT 69
           PRD PF T
Sbjct: 697 PRDLPFST 704

[Close]

BLAST of CSPI01G11330 vs. NCBI nr
Match: XP_038901609.1 (protein TIC 100 [Benincasa hispida])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1   MGLLDEDSTSSTNLEKKASLEEERKEEDDDNDEEVDDAPPSSFGSIAADLDPSKDQKPNK 60
           MGLLDED TSS NL+KKAS+EEE  EED+D+DE+VDDAPPSSFGSI+AD DPSKDQKPNK
Sbjct: 640 MGLLDEDVTSSINLDKKASVEEEDGEEDEDDDEDVDDAPPSSFGSISADQDPSKDQKPNK 699

Query: 61  PRDSPFKT 69
           PRDSPF T
Sbjct: 700 PRDSPFST 707

[Close]

BLAST of CSPI01G11330 vs. NCBI nr
Match: XP_008458623.1 (PREDICTED: protein TIC 100 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-18
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1   MGLLDEDSTSSTNLEKKASLEEERKEEDDDNDEEVDDAPPSSFGSIAADLDPSKDQKPNK 60
           MGLLDEDSTSSTNL+KKAS+EEE +EEDD +DE+  DAPPSSFGSIAAD DPSKDQKPNK
Sbjct: 643 MGLLDEDSTSSTNLDKKASVEEEDEEEDDYDDEDTFDAPPSSFGSIAADQDPSKDQKPNK 702

Query: 61  PRDSPFKT 69
           P +SPF T
Sbjct: 703 PTNSPFST 710

[Close]

BLAST of CSPI01G11330 vs. NCBI nr
Match: KAA0033375.1 (protein TIC 100 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-18
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1   MGLLDEDSTSSTNLEKKASLEEERKEEDDDNDEEVDDAPPSSFGSIAADLDPSKDQKPNK 60
           MGLLDEDSTSSTNL+KKAS+EEE +EEDD +DE+  DAPPSSFGSIAAD DPSKDQKPNK
Sbjct: 911 MGLLDEDSTSSTNLDKKASVEEEDEEEDDYDDEDTFDAPPSSFGSIAADQDPSKDQKPNK 970

Query: 61  PRDSPFKT 69
           P +SPF T
Sbjct: 971 PTNSPFST 978

[Close]

BLAST of CSPI01G11330 vs. NCBI nr
Match: XP_004145783.1 (protein TIC 100 [Cucumis sativus] >KGN46919.1 hypothetical protein Csa_021042 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-15
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1   MGLLDEDSTSSTNLEKKASLEEERKEE---DDDNDEEVDDAPPSSFGSIAADLDPSKDQK 60
           MGLL +DSTSSTNLE KAS+EEE +EE   D D+DE+ DDAPPSSFGSIAA  DPSKDQK
Sbjct: 628 MGLLGKDSTSSTNLETKASVEEEGEEENNYDYDDDEDADDAPPSSFGSIAAYQDPSKDQK 687

Query: 61  PNKPRDSPFKT 69
           PNKPRDS F T
Sbjct: 688 PNKPRDSSFST 698

[Close]

BLAST of CSPI01G11330 vs. NCBI nr
Match: XP_022140428.1 (protein TIC 100 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1   MGLLDEDSTSSTNLEKKASL-----EEERKEEDDDNDEEVDDAPPSSFGSIAADLDPSKD 60
           M LLDED  SSTN +KKAS+     EEE +EE+DD++++VDDAPPSSFGS++AD D SKD
Sbjct: 640 MDLLDEDVPSSTNQDKKASVEEGAEEEEEEEEEDDDNDDVDDAPPSSFGSVSADRDLSKD 699

Query: 61  QKPNKPRDSPFKT 69
           QKP KPRDSPF T
Sbjct: 700 QKPKKPRDSPFST 712

The following BLAST results are available for this feature:

BLAST of CSPI01G11330 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G11330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SW35	2.8e-18	80.88	Protein TIC 100 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G0024...	[more]
A0A1S3C8V4	2.8e-18	80.88	protein TIC 100 OS=Cucumis melo OX=3656 GN=LOC103497973 PE=4 SV=1	[more]
A0A0A0KDJ9	2.2e-15	76.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G150580 PE=4 SV=1	[more]
A0A6J1CHZ6	7.2e-14	67.12	protein TIC 100 OS=Momordica charantia OX=3673 GN=LOC111011109 PE=4 SV=1	[more]
A0A6J1H060	8.2e-10	60.29	protein TIC 100 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459216 PE=4 SV...	[more]

BLAST of CSPI01G11330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901609.1	3.1e-19	82.35	protein TIC 100 [Benincasa hispida]	[more]
XP_008458623.1	5.8e-18	80.88	PREDICTED: protein TIC 100 [Cucumis melo]	[more]
KAA0033375.1	5.8e-18	80.88	protein TIC 100 [Cucumis melo var. makuwa]	[more]
XP_004145783.1	4.6e-15	76.06	protein TIC 100 [Cucumis sativus] >KGN46919.1 hypothetical protein Csa_021042 [C...	[more]
XP_022140428.1	1.5e-13	67.12	protein TIC 100 [Momordica charantia]	[more]

BLAST of CSPI01G11330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G11330.1	CSPI01G11330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0045037	protein import into chloroplast stroma
cellular_component	GO:0009706	chloroplast inner membrane
molecular_function	GO:0008320	protein transmembrane transporter activity