CSPI01G10460 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G10460
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	p55
Location	Chr1: 6582619 .. 6583451 (-)
RNA-Seq Expression	CSPI01G10460
Synteny	CSPI01G10460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTTTTTAAAATAGTGAAAAATAGGTTAGGTTTATTTGGCACAGGTTTGGACAATGACGACCAATAATGATATAAAGATAGGTAGATGTGATTTGGAGTTTGATGATAAGGCACAACACACAATATCATGAGAGGAAACAAGAATTTTTGTAACGATGAACTTATTTGTTCGAAAAGCAACTCCGTCAAAAGTTCACAAGTGAAGGGTTCGAGCAGCCTAGCAACAAAAGATCTGATACTGAAAACGGAGGAAACAATTAAGAAGGTGAAAAGCGAGTGCTGGAAAAAGGATAATTTGGCGAGAGGTTCTTTGTTGGGTTGCTTTGAGTCTGCACAGACTCTGCTCGTGGCATGCACTGCCGTACTGCCAACCGAAAACAAAAAGGCACTACCTCCGAGCTCGGGCTCTTCTCTAACAGCTCCACTGGATGATCTGAAAGTGAAAGTGAATGAAATGGTTAATATGCTGAAAAGTGAAGGACATTTGGTGATCAATGGTTCTTTGTTGGCTTGCTTTGTGTCTGCACAGACTCTCCTCATGGCTTGCACTACCGAGCTTTTGCCCACAACATCAGGCCGGCAGTGAAGGTTCTATATATTAATGATAGTTCTACAACTACTGAGTCTTTTAATTTTCTTTCTTTTTTTTTCGTTGTGAATGTAGTGTTTGATTGCCTCCACATCTCATGCTTTCTTTAGACTTTTCTTTATGTAGAAATAAAATGAATGTTTTTATTTATGTAATTGAAGTATCTCAAAGATCTAGTTCACATATTAGAGTCGTATAAAATAACAAATAATAAAGAGTGGAACTTGATCACTTGAAATAAAA

mRNA sequence

AGTTTTTTAAAATAGTGAAAAATAGGTTAGGTTTATTTGGCACAGGTTTGGACAATGACGACCAATAATGATATAAAGATAGGTAGATGTGATTTGGAGTTTGATGATAAGGCACAACACACAATATCATGAGAGGAAACAAGAATTTTTGTAACGATGAACTTATTTGTTCGAAAAGCAACTCCGTCAAAAGTTCACAAGTGAAGGGTTCGAGCAGCCTAGCAACAAAAGATCTGATACTGAAAACGGAGGAAACAATTAAGAAGGTGAAAAGCGAGTGCTGGAAAAAGGATAATTTGGCGAGAGGTTCTTTGTTGGGTTGCTTTGAGTCTGCACAGACTCTGCTCGTGGCATGCACTGCCGTACTGCCAACCGAAAACAAAAAGGCACTACCTCCGAGCTCGGGCTCTTCTCTAACAGCTCCACTGGATGATCTGAAAGTGAAAGTGAATGAAATGGTTAATATGCTGAAAAGTGAAGGACATTTGGTGATCAATGGTTCTTTGTTGGCTTGCTTTGTGTCTGCACAGACTCTCCTCATGGCTTGCACTACCGAGCTTTTGCCCACAACATCAGGCCGGCAGTGAAGGTTCTATATATTAATGATAGTTCTACAACTACTGAGTCTTTTAATTTTCTTTCTTTTTTTTTCGTTGTGAATGTAGTGTTTGATTGCCTCCACATCTCATGCTTTCTTTAGACTTTTCTTTATGTAGAAATAAAATGAATGTTTTTATTTATGTAATTGAAGTATCTCAAAGATCTAGTTCACATATTAGAGTCGTATAAAATAACAAATAATAAAGAGTGGAACTTGATCACTTGAAATAAAA

Coding sequence (CDS)

ATGAGAGGAAACAAGAATTTTTGTAACGATGAACTTATTTGTTCGAAAAGCAACTCCGTCAAAAGTTCACAAGTGAAGGGTTCGAGCAGCCTAGCAACAAAAGATCTGATACTGAAAACGGAGGAAACAATTAAGAAGGTGAAAAGCGAGTGCTGGAAAAAGGATAATTTGGCGAGAGGTTCTTTGTTGGGTTGCTTTGAGTCTGCACAGACTCTGCTCGTGGCATGCACTGCCGTACTGCCAACCGAAAACAAAAAGGCACTACCTCCGAGCTCGGGCTCTTCTCTAACAGCTCCACTGGATGATCTGAAAGTGAAAGTGAATGAAATGGTTAATATGCTGAAAAGTGAAGGACATTTGGTGATCAATGGTTCTTTGTTGGCTTGCTTTGTGTCTGCACAGACTCTCCTCATGGCTTGCACTACCGAGCTTTTGCCCACAACATCAGGCCGGCAGTGA

Protein sequence

MRGNKNFCNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLARGSLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHLVINGSLLACFVSAQTLLMACTTELLPTTSGRQ*

Homology

[Close]

BLAST of CSPI01G10460 vs. ExPASy TrEMBL
Match: A0A0A0LU71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MRGNKNFCNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLARG 60
           MRGNKNF NDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLA G
Sbjct: 1   MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG 60

Query: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120
           SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL
Sbjct: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120

Query: 121 VINGSLLACFVSAQTLLMACTTELLPTTSGRQ 153
           VING LLACFVSAQTLLMACTTELLPTTSGRQ
Sbjct: 121 VINGPLLACFVSAQTLLMACTTELLPTTSGRQ 152

[Close]

BLAST of CSPI01G10460 vs. ExPASy TrEMBL
Match: A0A1S3B2P2 (uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485133 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.8e-12
Identity = 68/171 (39.77%), Postives = 79/171 (46.20%), Query Frame = 0


Query: 35  DLILKTEETIKKVKSECWKKDNLARGSLLGCFESAQT--------LLVACTAVLP----- 94
           DLI + EE +KK+K    KKD++  G LL  F SA T        LL A T   P     
Sbjct: 152 DLIERVEELVKKLKGVDGKKDSV-NGPLLASFMSAFTQLENWTEQLLSASTVNEPSSPSK 211

Query: 95  -----------------------------------------TENKKALPPSSGSSLTAPL 152
                                                    T+ K     +SGSSLT PL
Sbjct: 212 LSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKAQTDQNSGSSLTVPL 271

[Close]

BLAST of CSPI01G10460 vs. ExPASy TrEMBL
Match: A0A5A7UTH3 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005520 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.8e-12
Identity = 68/171 (39.77%), Postives = 79/171 (46.20%), Query Frame = 0


Query: 35  DLILKTEETIKKVKSECWKKDNLARGSLLGCFESAQT--------LLVACTAVLP----- 94
           DLI + EE +KK+K    KKD++  G LL  F SA T        LL A T   P     
Sbjct: 141 DLIERVEELVKKLKGVDGKKDSV-NGPLLASFMSAFTQLENWTEQLLSASTVNEPSSPSK 200

Query: 95  -----------------------------------------TENKKALPPSSGSSLTAPL 152
                                                    T+ K     +SGSSLT PL
Sbjct: 201 LSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKAQTDQNSGSSLTVPL 260

[Close]

BLAST of CSPI01G10460 vs. ExPASy TrEMBL
Match: A0A0A0LRJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-06
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 4   NKNFCNDELI--CSKSNSVKSSQVKGSSS--LATKDLILKTEETIKKVKSECWKKDNLAR 63
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL  
Sbjct: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79

Query: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 111
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 134

[Close]

BLAST of CSPI01G10460 vs. ExPASy TrEMBL
Match: A0A5D3BJN2 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLK---SEGHLVINGSLLACFVSAQTLL 140
           PT+  K       SS   P+ DL  KV +M+ MLK    +   +++  LLACFVSAQTLL
Sbjct: 63  PTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFVSAQTLL 122

Query: 141 MACTTELLPTTSGRQ 153
           MACT ELL  ++G++
Sbjct: 123 MACTAELLSKSTGKK 137

[Close]

BLAST of CSPI01G10460 vs. NCBI nr
Match: KGN64499.1 (hypothetical protein Csa_013478 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 4.9e-73
Identity = 149/152 (98.03%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MRGNKNFCNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLARG 60
           MRGNKNF NDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLA G
Sbjct: 1   MRGNKNFSNDELICSKSNSVKSSQVKGSSSLATKDLILKTEETIKKVKSECWKKDNLATG 60

Query: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120
           SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL
Sbjct: 61  SLLGCFESAQTLLVACTAVLPTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLKSEGHL 120

Query: 121 VINGSLLACFVSAQTLLMACTTELLPTTSGRQ 153
           VING LLACFVSAQTLLMACTTELLPTTSGRQ
Sbjct: 121 VINGPLLACFVSAQTLLMACTTELLPTTSGRQ 152

[Close]

BLAST of CSPI01G10460 vs. NCBI nr
Match: XP_008440827.1 (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_008440836.1 PREDICTED: uncharacterized protein LOC103485133 isoform X2 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 68/171 (39.77%), Postives = 79/171 (46.20%), Query Frame = 0


Query: 35  DLILKTEETIKKVKSECWKKDNLARGSLLGCFESAQT--------LLVACTAVLP----- 94
           DLI + EE +KK+K    KKD++  G LL  F SA T        LL A T   P     
Sbjct: 152 DLIERVEELVKKLKGVDGKKDSV-NGPLLASFMSAFTQLENWTEQLLSASTVNEPSSPSK 211

Query: 95  -----------------------------------------TENKKALPPSSGSSLTAPL 152
                                                    T+ K     +SGSSLT PL
Sbjct: 212 LSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKAQTDQNSGSSLTVPL 271

[Close]

BLAST of CSPI01G10460 vs. NCBI nr
Match: KAA0056835.1 (p55 [Cucumis melo var. makuwa] >TYJ99336.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 68/171 (39.77%), Postives = 79/171 (46.20%), Query Frame = 0


Query: 35  DLILKTEETIKKVKSECWKKDNLARGSLLGCFESAQT--------LLVACTAVLP----- 94
           DLI + EE +KK+K    KKD++  G LL  F SA T        LL A T   P     
Sbjct: 141 DLIERVEELVKKLKGVDGKKDSV-NGPLLASFMSAFTQLENWTEQLLSASTVNEPSSPSK 200

Query: 95  -----------------------------------------TENKKALPPSSGSSLTAPL 152
                                                    T+ K     +SGSSLT PL
Sbjct: 201 LSASNNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKAQTDQNSGSSLTVPL 260

[Close]

BLAST of CSPI01G10460 vs. NCBI nr
Match: KGN64500.1 (hypothetical protein Csa_014086 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-06
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 4   NKNFCNDELI--CSKSNSVKSSQVKGSSS--LATKDLILKTEETIKKVKSECWKKDNLAR 63
           N +  N+ LI    KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL  
Sbjct: 20  NIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVS 79

Query: 64  GSLLGCFESAQTLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 111
             LL CF +AQTLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 80  SPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 134

[Close]

BLAST of CSPI01G10460 vs. NCBI nr
Match: KAA0056836.1 (p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-05
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 81  PTENKKALPPSSGSSLTAPLDDLKVKVNEMVNMLK---SEGHLVINGSLLACFVSAQTLL 140
           PT+  K       SS   P+ DL  KV +M+ MLK    +   +++  LLACFVSAQTLL
Sbjct: 63  PTQKPKTDNAEKASSSGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFVSAQTLL 122

Query: 141 MACTTELLPTTSGRQ 153
           MACT ELL  ++G++
Sbjct: 123 MACTAELLSKSTGKK 137

The following BLAST results are available for this feature:

BLAST of CSPI01G10460 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G10460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU71	2.4e-73	98.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060760 PE=4 SV=1	[more]
A0A1S3B2P2	6.8e-12	39.77	uncharacterized protein LOC103485133 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UTH3	6.8e-12	39.77	p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005520 PE=4 SV=1	[more]
A0A0A0LRJ2	3.3e-06	40.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G060770 PE=4 SV=1	[more]
A0A5D3BJN2	2.8e-05	45.33	p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1	[more]

BLAST of CSPI01G10460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64499.1	4.9e-73	98.03	hypothetical protein Csa_013478 [Cucumis sativus]	[more]
XP_008440827.1	1.4e-11	39.77	PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo] >XP_00...	[more]
KAA0056835.1	1.4e-11	39.77	p55 [Cucumis melo var. makuwa] >TYJ99336.1 p55 [Cucumis melo var. makuwa]	[more]
KGN64500.1	6.7e-06	40.87	hypothetical protein Csa_014086 [Cucumis sativus]	[more]
KAA0056836.1	5.7e-05	45.33	p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G10460 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G10460.1	CSPI01G10460.1	mRNA