CSPI01G08410 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G08410
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-type domain-containing protein
Location	Chr1: 5277305 .. 5278013 (-)
RNA-Seq Expression	CSPI01G08410
Synteny	CSPI01G08410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAAAAGCCAGAAGGACACTCATCATCAAATTCTTCTTCTTCTTTTTTTTCTTCTTCTTCTTCTTCCTCTTCATCTCTCTGTCTCTCTGTCTCTGTGTGTCTTTAAAACTCAACCCCAACAAAATTCTTCCTTTTGAAGATCCAAAATGAGTGAATCTACAGAATAGAACGAAAACCAAAACAAAAGGGGTTTGTCATATTGTGGAGATTATTATGGTTATGGAGATTGTTGTATCAGCTGTTCTGTTAGTGGTTGGAATTGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTGGAGAAGTGATAATAATAATAATAACAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAGCAACAAACTGGAGGATTTTGAAATGGAATGCGTGATTTGTTTGGAGAATTTCAAAATGGGGGAAAGATGCAGATTGCTGCCTAATTGTAATCATAGTTTTCATGTTCATTGTATAGATTCTTGGCTTTTGAACAAACCCATTTGCCCAATTTGTAGAACTTTTGCTGCTGTTCTTCCCAAAATTTCATTGATTCAATTGAATTGATTTGGTTCATGGTTCTGATTTTGCTGCCAATTGTGGTGGCCGGGCCGGAGGAAGTCGACGTTCAAAAGAAGCCCCAACGTCTGCAG

mRNA sequence

ATGAGACAAAAGCCAGAAGGACACTCATCATCAAATTCTTCTTCTTCTTTTTTTTCTTCTTCTTCTTCTTCCTCTTCATCTCTCTGTCTCTCTGTCTCTATTATTATGGTTATGGAGATTGTTGTATCAGCTGTTCTGTTAGTGGTTGGAATTGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTGGAGAAGTGATAATAATAATAATAACAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAGCAACAAACTGGAGGATTTTGAAATGGAATGCAACTTTTGCTGCTGTTCTTCCCAAAATTTCATTGATTCAATTGAATTGATTTGGTTCATGGTTCTGATTTTGCTGCCAATTGTGGTGGCCGGGCCGGAGGAAGTCGACGTTCAAAAGAAGCCCCAACGTCTGCAG

Coding sequence (CDS)

ATGAGACAAAAGCCAGAAGGACACTCATCATCAAATTCTTCTTCTTCTTTTTTTTCTTCTTCTTCTTCTTCCTCTTCATCTCTCTGTCTCTCTGTCTCTATTATTATGGTTATGGAGATTGTTGTATCAGCTGTTCTGTTAGTGGTTGGAATTGCTGTTTTAGTTGTAATTCATGTTTGTATTGTTGGGAGAGCTTTAAGAGAAGAAGGAATTTGGAGAAGTGATAATAATAATAATAACAATAGTTATGGAATGAAGAGATTTTCAAATGAAGATTTGGAGAAGATTCCTTGTTATGAGTACAGCAACAAACTGGAGGATTTTGAAATGGAATGCAACTTTTGCTGCTGTTCTTCCCAAAATTTCATTGATTCAATTGAATTGATTTGGTTCATGGTTCTGATTTTGCTGCCAATTGTGGTGGCCGGGCCGGAGGAAGTCGACGTTCAAAAGAAGCCCCAACGTCTGCAG

Protein sequence

MRQKPEGHSSSNSSSSFFSSSSSSSSSLCLSVSIIMVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIPCYEYSNKLEDFEMECNFCCCSSQNFIDSIELIWFMVLILLPIVVAGPEEVDVQKKPQRLQ

Homology

[Close]

BLAST of CSPI01G08410 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.9e-11
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 36  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDL 95
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N         SN+DL
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKN--------LSNQDL 60

Query: 96  EKIPCYEYSN----KLEDFEMECNFC 116
           EK+PCYEY +         ++EC  C
Sbjct: 61  EKLPCYEYKSGEKQSTNGVDLECVVC 78

[Close]

BLAST of CSPI01G08410 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.9e-11
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 36  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDL 95
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N         SN+DL
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKN--------LSNQDL 60

Query: 96  EKIPCYEYSN----KLEDFEMECNFC 116
           EK+PCYEY +         ++EC  C
Sbjct: 61  EKLPCYEYKSGEKQSTNGVDLECVVC 78

[Close]

BLAST of CSPI01G08410 vs. ExPASy TrEMBL
Match: W9RES1 (RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 38  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGM-KRFSNEDLEKI 97
           MEIV+S +LL VGIAVLVVIH+CIVGRA        ++NNNNNN  G  KR S+EDL+ I
Sbjct: 1   MEIVISVILLFVGIAVLVVIHICIVGRAFGRGNQGANNNNNNNNILGSNKRMSSEDLKMI 60

Query: 98  PCYEY--SNKLEDFEMECNFC 116
           PC++Y  S + E   ++C  C
Sbjct: 61  PCFDYNMSGEKESSFVDCAVC 81

[Close]

BLAST of CSPI01G08410 vs. ExPASy TrEMBL
Match: A0A059A647 (RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02856 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 36  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEK 95
           MVMEI++S VLL +GIAVLVVIHVCIVGRA RE G +       N++    + S+EDL+K
Sbjct: 1   MVMEIIISVVLLFMGIAVLVVIHVCIVGRAFREGGGFSRGLVQRNSNSAASKLSSEDLKK 60

Query: 96  IPCYEY--SNKLEDFEMECNFC 116
           +PC+EY   +K  D + +C  C
Sbjct: 61  LPCFEYGSGDKASDRDEDCAVC 82

[Close]

BLAST of CSPI01G08410 vs. ExPASy TrEMBL
Match: W1P7Q1 (RING-type domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00006p00267830 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 32  VSIIMVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNE 91
           V+ IMVM IV+S +LL VGI VLV+IHVCIVGRALR   I    N N+ NS G+ R   E
Sbjct: 10  VAQIMVMAIVISVILLFVGIGVLVLIHVCIVGRALRSGMIIARSNVNSGNSSGISR---E 69

Query: 92  DLEKIPCYEY-SNKLEDFEMECNFC 116
           DL+++PC++Y +   E   ++C  C
Sbjct: 70  DLQRLPCFDYKTGDKEKGPIDCAVC 91

[Close]

BLAST of CSPI01G08410 vs. NCBI nr
Match: XP_004152551.1 (uncharacterized protein LOC101222125 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-29
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 38  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIP 97
           MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIP
Sbjct: 1   MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGMKRFSNEDLEKIP 60

Query: 98  CYEYSNKLEDFEME 112
           CYEYSNKLEDFEME
Sbjct: 61  CYEYSNKLEDFEME 74

[Close]

BLAST of CSPI01G08410 vs. NCBI nr
Match: XP_022994122.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 36  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDL 95
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N         SN+DL
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKN--------LSNQDL 60

Query: 96  EKIPCYEYSN----KLEDFEMECNFC 116
           EK+PCYEY +         ++EC  C
Sbjct: 61  EKLPCYEYKSGEKQSTNGVDLECVVC 78

[Close]

BLAST of CSPI01G08410 vs. NCBI nr
Match: XP_022954431.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo] >KAG6573050.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012238.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 36  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALR--EEGIWRSDNNNNNNSYGMKRFSNEDL 95
           MVMEIVVSAVLL+VGIAVLVVIHVCIVGRA R   EGIWRS+   N         SN+DL
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKN--------LSNQDL 60

Query: 96  EKIPCYEYSN----KLEDFEMECNFC 116
           EK+PCYEY +         ++EC  C
Sbjct: 61  EKLPCYEYKSGEKQSTNGVDLECVVC 78

[Close]

BLAST of CSPI01G08410 vs. NCBI nr
Match: XP_010101192.2 (RING-H2 finger protein ATL80 [Morus notabilis])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 36  MVMEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGM-KRFSNEDLE 95
           MVMEIV+S +LL VGIAVLVVIH+CIVGRA        ++NNNNNN  G  KR S+EDL+
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHICIVGRAFGRGNQGANNNNNNNNILGSNKRMSSEDLK 60

Query: 96  KIPCYEY--SNKLEDFEMECNFC 116
            IPC++Y  S + E   ++C  C
Sbjct: 61  MIPCFDYNMSGEKESSFVDCAVC 83

[Close]

BLAST of CSPI01G08410 vs. NCBI nr
Match: EXB87866.1 (RING-H2 finger protein ATL80 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 8.7e-09
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 38  MEIVVSAVLLVVGIAVLVVIHVCIVGRALREEGIWRSDNNNNNNSYGM-KRFSNEDLEKI 97
           MEIV+S +LL VGIAVLVVIH+CIVGRA        ++NNNNNN  G  KR S+EDL+ I
Sbjct: 1   MEIVISVILLFVGIAVLVVIHICIVGRAFGRGNQGANNNNNNNNILGSNKRMSSEDLKMI 60

Query: 98  PCYEY--SNKLEDFEMECNFC 116
           PC++Y  S + E   ++C  C
Sbjct: 61  PCFDYNMSGEKESSFVDCAVC 81

The following BLAST results are available for this feature:

BLAST of CSPI01G08410 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G08410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUU5	5.9e-11	59.30	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE...	[more]
A0A6J1GQW8	5.9e-11	59.30	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ...	[more]
W9RES1	4.2e-09	54.32	RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV...	[more]
A0A059A647	9.4e-09	51.22	RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K0...	[more]
W1P7Q1	6.7e-07	50.59	RING-type domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00...	[more]

BLAST of CSPI01G08410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152551.1	1.2e-29	100.00	uncharacterized protein LOC101222125 [Cucumis sativus]	[more]
XP_022994122.1	1.2e-10	59.30	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_022954431.1	1.2e-10	59.30	RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 f...	[more]
XP_010101192.2	1.3e-09	55.42	RING-H2 finger protein ATL80 [Morus notabilis]	[more]
EXB87866.1	8.7e-09	54.32	RING-H2 finger protein ATL80 [Morus notabilis]	[more]

BLAST of CSPI01G08410 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 36..116
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 36..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G08410.1	CSPI01G08410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity