CSPI01G06720 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G06720
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 4254345 .. 4255970 (-)
RNA-Seq ExpressionCSPI01G06720
SyntenyCSPI01G06720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTATCGGCCACACAATAAAAATAACTCATTTAAGAAGCGGTGATCATCCTTATGATTCACCGCACAATAAAGAAAAACAAAGAAGATGGGGCCGCTAGCTCTTACAAATCTCTGATTTCGACGATTTTCATCAAGAAATGCTCTGATCTTTTGGATTGACGCTCCGATTTCAAGATTGATTGGAGGAGAGGAAGGGTTTGTGTCTGGGATCTGGGGATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAATTTGAACAATGAGACGAGAGGAAGACGAAGAAGCTGTACTCTCGGAGTTGTTTTGTTTGTTCATCGTGATTTACGCTTAATTAACTTCCTAATCCTTTGTAAATATTAATCGTAAAATAATCATTTTAATTAATTGCCTTAATTTGTTTCCATACTTCTTAATTACCATATTCTCCTTCATGATTTTCTTATTGTTAAAACTCAAAAGAACACACACACATATGTATACACACACACACACTTCATTCACTCATTCATTCATTTATTTAATTGTAATTAATGCATGCTGTTATATAGTTCAATGGAGATTGGTACAATTTTTTATTGTACAGAAGGTTTGAATTTTCTCACTGTTTGAATTTTTAGAAATGTTAGAACTTTGTTTTAGAACAATTATGAATATGGGACAAAGATTTGAAGTAGATAAGATGTTATTTGAACTGTCAAACTGTATGCTATTATCAATTTAGACTCACATTTTGTAGGGTTTTTATTTTCTTTCTTGAAAGTGTATACTACAACAAAAGGGGGAGACTTAGAGAGGCAAAGTCATGTTAAAAGAAAGAAAGAAAAGGAAAACTCAAAGAGAAGAGACGAGAAACATATGCACACAACAACGTGCATAAAATAAAGCAAAGAAAACGACAATTAGGGCAATGGGATAATATGAACGTCCCAAACTGAGAACTCAGATAGGACCTATTGTTTTATGATATCCACGAAAATCTTCACCAAAGGCAAACAAAAAGGGCATTTGACTGCACAAATTGAAAAAAAGAAAACGATGTAAGTCGGTATGAACCAAAAAGCTACGTTCCATATTAACACTTCCTTCACTTATACTCATAAGCTTAACATTCATACATTTACTAGAACACTTTCTTCACTCATATTCATAAGCTTAACGTTCATACATTTACTAGAACACTTCGTTCACTTATACTCATAAGCGAATCTCAGGCCGTATATGTGTTTTACTAGTGTTTTATATGTGTTTTACGTATATGTGTTTTATTAGTGTTTTATTTTGTTAAATGATGTTGGAGACCAAAATTAGAGAGATTAAGAATGCTAGAACATTATTCCTTCTCCCC

mRNA sequence

ACTATCGGCCACACAATAAAAATAACTCATTTAAGAAGCGGTGATCATCCTTATGATTCACCGCACAATAAAGAAAAACAAAGAAGATGGGGCCGCTAGCTCTTACAAATCTCTGATTTCGACGATTTTCATCAAGAAATGCTCTGATCTTTTGGATTGACGCTCCGATTTCAAGATTGATTGGAGGAGAGGAAGGGTTTGTGTCTGGGATCTGGGGATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAATTTGAACAATGAGACGAGAGGAAGACGAAGAAGCTGTACTCTCGGAGTTGTTTTGTTTGTTCATCGTGATTTACGCTTAATTAACTTCCTAATCCTTTGTAAATATTAATCGTAAAATAATCATTTTAATTAATTGCCTTAATTTGTTTCCATACTTCTTAATTACCATATTCTCCTTCATGATTTTCTTATTGTTAAAACTCAAAAGAACACACACACATATGTATACACACACACACACTTCATTCACTCATTCATTCATTTATTTAATTGTAATTAATGCATGCTGTTATATAGTTCAATGGAGATTGGTACAATTTTTTATTGTACAGAAGGTTTGAATTTTCTCACTGTTTGAATTTTTAGAAATGTTAGAACTTTGTTTTAGAACAATTATGAATATGGGACAAAGATTTGAAGTAGATAAGATGTTATTTGAACTGTCAAACTGTATGCTATTATCAATTTAGACTCACATTTTGTAGGGTTTTTATTTTCTTTCTTGAAAGTGTATACTACAACAAAAGGGGGAGACTTAGAGAGGCAAAGTCATGTTAAAAGAAAGAAAGAAAAGGAAAACTCAAAGAGAAGAGACGAGAAACATATGCACACAACAACGTGCATAAAATAAAGCAAAGAAAACGACAATTAGGGCAATGGGATAATATGAACGTCCCAAACTGAGAACTCAGATAGGACCTATTGTTTTATGATATCCACGAAAATCTTCACCAAAGGCAAACAAAAAGGGCATTTGACTGCACAAATTGAAAAAAAGAAAACGATGTAAGTCGGTATGAACCAAAAAGCTACGTTCCATATTAACACTTCCTTCACTTATACTCATAAGCTTAACATTCATACATTTACTAGAACACTTTCTTCACTCATATTCATAAGCTTAACGTTCATACATTTACTAGAACACTTCGTTCACTTATACTCATAAGCGAATCTCAGGCCGTATATGTGTTTTACTAGTGTTTTATATGTGTTTTACGTATATGTGTTTTATTAGTGTTTTATTTTGTTAAATGATGTTGGAGACCAAAATTAGAGAGATTAAGAATGCTAGAACATTATTCCTTCTCCCC

Coding sequence (CDS)

ATGGAGAGGGAAAAGAGGAAGGAAATGTCAGAGGGGGAGAAAGGGGGAGTGGTTGAAGAGATGAAGAGGAGGAAGAAGAAGAAGATAAAGAAGGAGGAGGAGAAGAAAGAGGCGGTAGCAGCGGCGGAGGTGGAGGAGCCATCGACAGAGGAGGTGGAGGAATTTTATGCCATTTTGAGGAGAATGGACGAGGCTTTGCGGTACTTGAAAGGGAAGAGAGTGCCGGAGAGAAGAACGACGATGGGTGAGACGGCGGTGGCTGTGGAAAATAAGGAACTGAATTTGAATGAAGTGCCTTCAGATTCTAGTAACTAA

Protein sequence

MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILRRMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN*
Homology
[Close]
BLAST of CSPI01G06720 vs. ExPASy TrEMBL
Match: A0A0A0LVR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60
           MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

[Close]
BLAST of CSPI01G06720 vs. NCBI nr
Match: KGN64116.1 (hypothetical protein Csa_013670 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-42
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60
           MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR
Sbjct: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 105
           RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN
Sbjct: 61  RMDEALRYLKGKRVPERRTTMGETAVAVENKELNLNEVPSDSSN 104

[Close]
BLAST of CSPI01G06720 vs. NCBI nr
Match: KAG6584363.1 (hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 4.9e-16
Identity = 69/109 (63.30%), Postives = 78/109 (71.56%), Query Frame = 0 

Query: 1   MEREKRKEMSEGEKGGVVEEMKRRKKKKIKKEEEKKEAVAAAEVEEPSTEEVEEFYAILR 60
           MEREKRK+MS GEK     E KR KK + ++ E    A    E+EEP+TEEVEEFYAILR
Sbjct: 1   MEREKRKKMSPGEK-----ETKRSKKTRKEEREAAAAAGVETEMEEPTTEEVEEFYAILR 60

Query: 61  RMDEALRYLKGKRVPERRTTMGETAV-----AVENKELNLNEVPSDSSN 105
           RMD ALRYLKGKRV ERRTT  ETAV       E +ELNLNEVP+DS+N
Sbjct: 61  RMDVALRYLKGKRVVERRTT-AETAVVGTGKGQEIQELNLNEVPADSTN 103

The following BLAST results are available for this feature:
BLAST of CSPI01G06720 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G06720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVR01.5e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042280 PE=4 SV=1[more]
BLAST of CSPI01G06720 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64116.13.1e-42100.00hypothetical protein Csa_013670 [Cucumis sativus][more]
KAG6584363.14.9e-1663.30hypothetical protein SDJN03_20295, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI01G06720 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G06720.1CSPI01G06720.1mRNA