CSPI01G06440 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G06440
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	PHD-type domain-containing protein
Location	Chr1: 4023245 .. 4023792 (-)
RNA-Seq Expression	CSPI01G06440
Synteny	CSPI01G06440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGAGTAATAATTAGATAAGATTTATGCAGGATATGAAAGGTACAAAGAAGTGACAAGGCTAGCAACACACACAATCATGGCAAGATGTGGTTTAGAACCCCCACCAAAACCAACAAAACAATACGTATCGTCCTCGGTTTGCAAACACACAGAAGAAGAAATCCGGAAGCTTCACAGGTCGACTCTAATGCCGGATTCTTGCAGGAAATGCTTCATGTGGTTTGTGAAAGATGTTGTTAATGCCATTATGTTAGAAAAACTAACGGTGGGTTCAACTTCATAGGCTGTAAAGAAACTAACAAATAATGTGGATTATTATCATTATTATCCGTAAGAGTTAGGAGAGGAGGACAAAATAGAGAAGCCAAAGAGTTGAAGAAGTAGAAGAAGAAGATGCGGGGACCAAACTGGAAGGGGTTGATGTGAAAGTGCTTTTGTGGACGCTCTGTGAAAGCACTCAGAAAAGCGCTTATGACAAAATCACGTGACTTTGAAGAACGTCAGCAGAAGATGGACATGGACATGGACGTGGACATCGTCTTTTAG

mRNA sequence

GCGGAGTAATAATTAGATAAGATTTATGCAGGATATGAAAGGTACAAAGAAGTGACAAGGCTAGCAACACACACAATCATGGCAAGATGTGGTTTAGAACCCCCACCAAAACCAACAAAACAATACGTATCGTCCTCGGTTTGCAAACACACAGAAGAAGAAATCCGGAAGCTTCACAGGTCGACTCTAATGCCGGATTCTTGCAGGAAATGCTTCATGTGGTTTGTGAAAGATGTTGTTAATGCCATTATGTTAGAAAAACTAACGTGCTTTTGTGGACGCTCTGTGAAAGCACTCAGAAAAGCGCTTATGACAAAATCACGTGACTTTGAAGAACGTCAGCAGAAGATGGACATGGACATGGACGTGGACATCGTCTTTTAG

Coding sequence (CDS)

ATGGCAAGATGTGGTTTAGAACCCCCACCAAAACCAACAAAACAATACGTATCGTCCTCGGTTTGCAAACACACAGAAGAAGAAATCCGGAAGCTTCACAGGTCGACTCTAATGCCGGATTCTTGCAGGAAATGCTTCATGTGGTTTGTGAAAGATGTTGTTAATGCCATTATGTTAGAAAAACTAACGTGCTTTTGTGGACGCTCTGTGAAAGCACTCAGAAAAGCGCTTATGACAAAATCACGTGACTTTGAAGAACGTCAGCAGAAGATGGACATGGACATGGACGTGGACATCGTCTTTTAG

Protein sequence

MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLEKLTCFCGRSVKALRKALMTKSRDFEERQQKMDMDMDVDIVF*

Homology

[Close]

BLAST of CSPI01G06440 vs. ExPASy TrEMBL
Match: A0A0A0LQB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039990 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE
Sbjct: 590 MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 649

Query: 61  KLT 64
           KLT
Sbjct: 650 KLT 652

[Close]

BLAST of CSPI01G06440 vs. ExPASy TrEMBL
Match: A0A1S3BYS2 (uncharacterized protein LOC103495032 OS=Cucumis melo OX=3656 GN=LOC103495032 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           MARCGLEPPPKPTKQYVS SVC+HTEEEIRKLHRSTLMPDSCRKCFM FVKDVVNAIMLE
Sbjct: 547 MARCGLEPPPKPTKQYVSCSVCRHTEEEIRKLHRSTLMPDSCRKCFMGFVKDVVNAIMLE 606

Query: 61  KL 63
           KL
Sbjct: 607 KL 608

[Close]

BLAST of CSPI01G06440 vs. ExPASy TrEMBL
Match: A0A6J1KFL6 (uncharacterized protein LOC111495363 OS=Cucurbita maxima OX=3661 GN=LOC111495363 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           MA CGLEPPPKP+K+++S SVCKHTEEE+ +LHRSTL P+SCR+CF+ +VKDVVNA+MLE
Sbjct: 545 MAACGLEPPPKPSKRFLSCSVCKHTEEEVGQLHRSTLRPESCRECFLVYVKDVVNALMLE 604

Query: 61  KL 63
           KL
Sbjct: 605 KL 606

[Close]

BLAST of CSPI01G06440 vs. ExPASy TrEMBL
Match: A0A6J1EDT4 (E3 ubiquitin-protein ligase UHRF1-like OS=Cucurbita moschata OX=3662 GN=LOC111431628 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           MA CGLEPPPKP+K+++S  VCKHTEEE+ +LHRSTLMP+SCR+CF+ +VKDVVNA+MLE
Sbjct: 544 MAACGLEPPPKPSKRFLSCLVCKHTEEEVGQLHRSTLMPESCRECFLVYVKDVVNALMLE 603

Query: 61  KL 63
           KL
Sbjct: 604 KL 605

[Close]

BLAST of CSPI01G06440 vs. ExPASy TrEMBL
Match: A0A6J1C877 (uncharacterized protein LOC111008874 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008874 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           M  CGLEPPP+ +K+++S SVC H  E+ R+LHRSTLM DSCR+CF+ FVKDVVN +M E
Sbjct: 547 MGACGLEPPPRCSKRFLSYSVCSH-REDARQLHRSTLMRDSCRECFLVFVKDVVNTLMSE 606

Query: 61  KL 63
           KL
Sbjct: 607 KL 607

[Close]

BLAST of CSPI01G06440 vs. NCBI nr
Match: XP_004137454.2 (uncharacterized protein LOC101208450 [Cucumis sativus] >KAE8652529.1 hypothetical protein Csa_013680 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE
Sbjct: 543 MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 602

Query: 61  KLT 64
           KLT
Sbjct: 603 KLT 605

[Close]

BLAST of CSPI01G06440 vs. NCBI nr
Match: XP_008454700.1 (PREDICTED: uncharacterized protein LOC103495032 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 2.5e-25
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           MARCGLEPPPKPTKQYVS SVC+HTEEEIRKLHRSTLMPDSCRKCFM FVKDVVNAIMLE
Sbjct: 547 MARCGLEPPPKPTKQYVSCSVCRHTEEEIRKLHRSTLMPDSCRKCFMGFVKDVVNAIMLE 606

Query: 61  KL 63
           KL
Sbjct: 607 KL 608

[Close]

BLAST of CSPI01G06440 vs. NCBI nr
Match: XP_023519898.1 (uncharacterized protein LOC111783226 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.5 bits (267), Expect = 7.1e-20
Identity = 47/62 (75.81%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           MA CGLEPPPKP+K+++S SVCKHTEEE+ +LHRSTLMP+SCR+CF+ +VKDVVNA+MLE
Sbjct: 545 MAACGLEPPPKPSKRFLSCSVCKHTEEEVGQLHRSTLMPESCRECFLVYVKDVVNALMLE 604

Query: 61  KL 63
           KL
Sbjct: 605 KL 606

[Close]

BLAST of CSPI01G06440 vs. NCBI nr
Match: XP_038895334.1 (uncharacterized protein LOC120083586 [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 9.3e-20
Identity = 47/62 (75.81%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           MA CGLEPPP+P+K+++S SVC+HT+EEI++LHRSTLMP+SCR+CF+ FVKDVVNAIMLE
Sbjct: 543 MAGCGLEPPPRPSKRFLSCSVCRHTQEEIQRLHRSTLMPNSCRECFLAFVKDVVNAIMLE 602

Query: 61  KL 63
           KL
Sbjct: 603 KL 604

[Close]

BLAST of CSPI01G06440 vs. NCBI nr
Match: XP_022924090.1 (E3 ubiquitin-protein ligase UHRF1-like [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 3.5e-19
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MARCGLEPPPKPTKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMWFVKDVVNAIMLE 60
           MA CGLEPPPKP+K+++S  VCKHTEEE+ +LHRSTLMP+SCR+CF+ +VKDVVNA+MLE
Sbjct: 544 MAACGLEPPPKPSKRFLSCLVCKHTEEEVGQLHRSTLMPESCRECFLVYVKDVVNALMLE 603

Query: 61  KL 63
           KL
Sbjct: 604 KL 605

The following BLAST results are available for this feature:

BLAST of CSPI01G06440 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G06440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB4	1.2e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039990 PE=4 SV=1	[more]
A0A1S3BYS2	1.2e-25	95.16	uncharacterized protein LOC103495032 OS=Cucumis melo OX=3656 GN=LOC103495032 PE=...	[more]
A0A6J1KFL6	1.7e-19	74.19	uncharacterized protein LOC111495363 OS=Cucurbita maxima OX=3661 GN=LOC111495363...	[more]
A0A6J1EDT4	1.7e-19	74.19	E3 ubiquitin-protein ligase UHRF1-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1C877	1.4e-13	64.52	uncharacterized protein LOC111008874 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CSPI01G06440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137454.2	2.4e-28	100.00	uncharacterized protein LOC101208450 [Cucumis sativus] >KAE8652529.1 hypothetica...	[more]
XP_008454700.1	2.5e-25	95.16	PREDICTED: uncharacterized protein LOC103495032 [Cucumis melo]	[more]
XP_023519898.1	7.1e-20	75.81	uncharacterized protein LOC111783226 [Cucurbita pepo subsp. pepo]	[more]
XP_038895334.1	9.3e-20	75.81	uncharacterized protein LOC120083586 [Benincasa hispida]	[more]
XP_022924090.1	3.5e-19	74.19	E3 ubiquitin-protein ligase UHRF1-like [Cucurbita moschata]	[more]

BLAST of CSPI01G06440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47177:SF4	2X PHD DOMAIN CONTAINING PROTEIN-LIKE	coord: 1..64
None	No IPR available	PANTHER	PTHR47177	F18C1.6 PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G06440.1	CSPI01G06440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding