CSPI01G05960 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G05960
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LYR motif-containing protein 4
Location	Chr1: 3742159 .. 3742425 (+)
RNA-Seq Expression	CSPI01G05960
Synteny	CSPI01G05960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTCCGTCCACCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACCGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCATTGATTCTTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCCATCTCCTCCGTCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCATTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACCATTGA

mRNA sequence

ATGGCAACTCCGTCCACCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACCGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCATTGATTCTTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCCATCTCCTCCGTCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCATTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACCATTGA

Coding sequence (CDS)

ATGGCAACTCCGTCCACCTCTGAGATCCTCTCGCTCTTTCGTTCTCTCCTGCGAACCGCCCGTCAATTTCCTGATTACAACATCAGAGAATACATCAAACGCCGTACCATTGATTCTTTCCGAGAAAATCAGACCCTCTCCGACGCTTCATCCATCTCCTCCGTCTACGCTGGCGGCAGAGCTCAGCTCGAGGTTGCCAAGCGCCAGGCCATTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCAACCATTGA

Protein sequence

MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEVAKRQAIVYSLYAPKVKSIMDVNH*

Homology

[Close]

BLAST of CSPI01G05960 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-08
Identity = 28/80 (35.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 6  TSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLEV 65
          T+++LSL+R L++ + +FP YN R Y  RR  D+FR N+++ D   +  +   GR  L++
Sbjct: 5  TAQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRDNLDM 64

Query: 66 AKRQAIVYSLYAPKVKSIMD 86
           +RQ  +  +Y P  K+I++
Sbjct: 65 IRRQVAIGKMY-PTQKTIVE 83

[Close]

BLAST of CSPI01G05960 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MA  S +++LSL+R++LR +++F  YN R Y  RR  D+FREN+ + D   I ++    +
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 AQLEVAKRQAIVYSLYA 78
            L V +RQ  +  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77

[Close]

BLAST of CSPI01G05960 vs. ExPASy Swiss-Prot
Match: B5X5U9 (LYR motif-containing protein 4A OS=Salmo salar OX=8030 GN=lyrm4a PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07
Identity = 27/76 (35.53%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MA  S ++++SL+R L++ +++FP YN R Y  RR  DSFREN  + +  ++  +    R
Sbjct: 1  MAACSRTQVISLYRMLIKESKKFPSYNYRTYALRRVKDSFRENLHVDNPKTLDMLLNQAR 60

Query: 61 AQLEVAKRQAIVYSLY 77
            L V +RQ  +  +Y
Sbjct: 61 ENLAVIRRQVSIGQMY 76

[Close]

BLAST of CSPI01G05960 vs. ExPASy Swiss-Prot
Match: B8JLQ0 (LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-07
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MA+ S ++++SL+R L++ +++FP YN R Y  RR  D FREN  + +  ++  +    R
Sbjct: 1  MASCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAR 60

Query: 61 AQLEVAKRQAIVYSLYA 78
            L V KRQ  +  LY+
Sbjct: 61 ENLAVIKRQVSIGHLYS 77

[Close]

BLAST of CSPI01G05960 vs. ExPASy Swiss-Prot
Match: Q6DCS1 (LYR motif-containing protein 4 OS=Xenopus laevis OX=8355 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.2e-07
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          M+  S S++LSL++ +LR +++F  YN R Y  RR  D+FRE + + D   I ++    +
Sbjct: 1  MSASSRSQVLSLYKIMLRESQRFSSYNYRTYAIRRIRDAFREKKNVDDFLEIETLLHRAK 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVNH 89
            L V +RQ  +  +YA     I    H
Sbjct: 61 ENLNVIQRQVTIGQMYATHKLVIESAEH 88

[Close]

BLAST of CSPI01G05960 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVNH 89
          AQLEVAKRQAIVYSLYAPKVKSIMDVNH
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVNH 88

[Close]

BLAST of CSPI01G05960 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.9e-31
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MATPS SEILSLFRSLLRTARQF DYNIREY KRR ID+FREN++LSD SSISS YAGG+
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDV 87
          AQLEVAKRQA+VYSLYAPKVKSIMDV
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 86

[Close]

BLAST of CSPI01G05960 vs. ExPASy TrEMBL
Match: A0A251UU63 (Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0157171 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29
Identity = 66/88 (75.00%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MATPS SEIL+LFRSLLR+ARQFPDYNIREY KRRTID+FR N+TLS+ SSI++ ++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVNH 89
          +QL+VAKRQA+VYSLYAPK+KSIMD+ H
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDIKH 88

[Close]

BLAST of CSPI01G05960 vs. ExPASy TrEMBL
Match: A0A2J6KBZ0 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X22101 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.7e-28
Identity = 62/86 (72.09%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 3  TPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQ 62
          TPS +EI++LFRSLLR+ARQFPDYNIREY KRRTID+FR+N+TLS+ SSI++ +  G++Q
Sbjct: 7  TPSRTEIIALFRSLLRSARQFPDYNIREYTKRRTIDAFRDNKTLSEPSSIAAAFTDGKSQ 66

Query: 63 LEVAKRQAIVYSLYAPKVKSIMDVNH 89
          L+VAKRQA+VYSLYAPK+KSIMD+ H
Sbjct: 67 LQVAKRQAVVYSLYAPKIKSIMDIKH 92

[Close]

BLAST of CSPI01G05960 vs. ExPASy TrEMBL
Match: A0A1S3XFP4 (LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 63/87 (72.41%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MA+PS  E+L+LFRSLL+TARQFPDYNIREY KRRTID FR+N+ LSD S +++ ++ GR
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVN 88
          AQLEVAKRQA+VYSLYAPKVKS+M++N
Sbjct: 61 AQLEVAKRQAVVYSLYAPKVKSVMELN 87

[Close]

BLAST of CSPI01G05960 vs. NCBI nr
Match: KGN64034.1 (hypothetical protein Csa_014098 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 3.0e-38
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVNH 89
          AQLEVAKRQAIVYSLYAPKVKSIMDVNH
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVNH 88

[Close]

BLAST of CSPI01G05960 vs. NCBI nr
Match: XP_038894896.1 (LYR motif-containing protein 4 [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 4.4e-34
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MATPS SE+LSLFRSLLRTARQFPDYNIREY KRRTID+FRENQ+LSDASSISS YAGG+
Sbjct: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVN 88
          AQLEVAKRQA+VYSLYAPKVKSIMDVN
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 87

[Close]

BLAST of CSPI01G05960 vs. NCBI nr
Match: KAG6607477.1 (LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037133.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.8e-33
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MA PS SEIL+LFRSLLRTARQFPDYNIREY KRRTID+FRENQ+LSD SSISSVYAGG+
Sbjct: 1  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGK 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVN 88
          AQLEVAKRQA+VYSLYAPKVKSIMDVN
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVN 87

[Close]

BLAST of CSPI01G05960 vs. NCBI nr
Match: XP_022137452.1 (LYR motif-containing protein 4 [Momordica charantia])

HSP 1 Score: 144.1 bits (362), Expect = 6.0e-31
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MATPS SEILSLFRSLLRTARQF DYNIREY KRR ID+FREN++LSD SSISS YAGG+
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDV 87
          AQLEVAKRQA+VYSLYAPKVKSIMDV
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 86

[Close]

BLAST of CSPI01G05960 vs. NCBI nr
Match: KAF5807263.1 (putative complex 1 LYR protein [Helianthus annuus])

HSP 1 Score: 136.7 bits (343), Expect = 9.6e-29
Identity = 66/88 (75.00%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60
          MATPS SEIL+LFRSLLR+ARQFPDYNIREY KRRTID+FR N+TLS+ SSI++ ++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQAIVYSLYAPKVKSIMDVNH 89
          +QL+VAKRQA+VYSLYAPK+KSIMD+ H
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDIKH 88

[Close]

BLAST of CSPI01G05960 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 94.4 bits (233), Expect = 5.1e-20
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 5  STSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGRAQLE 64
          S+SE+LSL R+LLR  RQFPDYNIREY KRRT+D FR N+ L+D S ++  YA  + QL 
Sbjct: 3  SSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLF 62

Query: 65 VAKRQAIVYSLYAPKVKSIMDV 87
          VA+R   VY  Y PK K+IM+V
Sbjct: 63 VAERVLKVYLAYPPKTKNIMEV 84

The following BLAST results are available for this feature:

BLAST of CSPI01G05960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B5XD90	1.9e-08	35.00	LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1	[more]
Q9HD34	1.6e-07	37.66	LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1	[more]
B5X5U9	4.8e-07	35.53	LYR motif-containing protein 4A OS=Salmo salar OX=8030 GN=lyrm4a PE=3 SV=1	[more]
B8JLQ0	4.8e-07	36.36	LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1	[more]
Q6DCS1	8.2e-07	32.95	LYR motif-containing protein 4 OS=Xenopus laevis OX=8355 GN=lyrm4 PE=3 SV=1	[more]

BLAST of CSPI01G05960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LST7	1.4e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1	[more]
A0A6J1C8A4	2.9e-31	87.21	LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE...	[more]
A0A251UU63	4.6e-29	75.00	Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g015...	[more]
A0A2J6KBZ0	8.7e-28	72.09	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X22101 PE=4 SV=1	[more]
A0A1S3XFP4	1.5e-27	72.41	LYR motif-containing protein 4 OS=Nicotiana tabacum OX=4097 GN=LOC107764517 PE=4...	[more]

BLAST of CSPI01G05960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64034.1	3.0e-38	100.00	hypothetical protein Csa_014098 [Cucumis sativus]	[more]
XP_038894896.1	4.4e-34	90.80	LYR motif-containing protein 4 [Benincasa hispida]	[more]
KAG6607477.1	3.8e-33	89.66	LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]
XP_022137452.1	6.0e-31	87.21	LYR motif-containing protein 4 [Momordica charantia]	[more]
KAF5807263.1	9.6e-29	75.00	putative complex 1 LYR protein [Helianthus annuus]	[more]

BLAST of CSPI01G05960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61220.1	5.1e-20	58.54	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 8..64 e-value: 9.9E-19 score: 67.2
None	No IPR available	PANTHER	PTHR47158	OS08G0239000 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR47158:SF1	OS08G0239000 PROTEIN	coord: 1..87
None	No IPR available	CDD	cd20264	Complex1_LYR_LYRM4	coord: 8..76 e-value: 7.54756E-29 score: 96.4345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G05960.1	CSPI01G05960.1	mRNA