CSPI01G05560 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G05560
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 3549202 .. 3549474 (+)
RNA-Seq Expression	CSPI01G05560
Synteny	CSPI01G05560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCACAATCTCAGCTTCACCTTCAACTCAATATCCAAAAAATATTAACATTATCGATGGTAGAGGAGAAGAAATCTGGTGGTTCATGGAATGTGGATAGCTCTCCTTTTGTAGAAAGAAGAGAAGATCTCAATTACCCAATTGCATTCTCATGGTTGACCAGATTGAATGAACATCCAATTGCAAAGGTGATAGATCCTTCCAAGGAGAAGGTTATGGGTCATCTCATGGCGAAATCTAACTCTCAAATTTACAAATCTCATAGTTGA

mRNA sequence

ATGCATTCACAATCTCAGCTTCACCTTCAACTCAATATCCAAAAAATATTAACATTATCGATGGTAGAGGAGAAGAAATCTGGTGGTTCATGGAATGTGGATAGCTCTCCTTTTGTAGAAAGAAGAGAAGATCTCAATTACCCAATTGCATTCTCATGGTTGACCAGATTGAATGAACATCCAATTGCAAAGGTGATAGATCCTTCCAAGGAGAAGGTTATGGGTCATCTCATGGCGAAATCTAACTCTCAAATTTACAAATCTCATAGTTGA

Coding sequence (CDS)

ATGCATTCACAATCTCAGCTTCACCTTCAACTCAATATCCAAAAAATATTAACATTATCGATGGTAGAGGAGAAGAAATCTGGTGGTTCATGGAATGTGGATAGCTCTCCTTTTGTAGAAAGAAGAGAAGATCTCAATTACCCAATTGCATTCTCATGGTTGACCAGATTGAATGAACATCCAATTGCAAAGGTGATAGATCCTTCCAAGGAGAAGGTTATGGGTCATCTCATGGCGAAATCTAACTCTCAAATTTACAAATCTCATAGTTGA

Protein sequence

MHSQSQLHLQLNIQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEHPIAKVIDPSKEKVMGHLMAKSNSQIYKSHS*

Homology

[Close]

BLAST of CSPI01G05560 vs. ExPASy TrEMBL
Match: A0A0A0LQ42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033150 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MHSQSQLHLQLNIQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH 60
          MHSQSQLHLQLN+QKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH
Sbjct: 1  MHSQSQLHLQLNVQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH 60

Query: 61 PIAKVIDPSKEKVMGHLMAKSNSQIYKSHS 91
          PIAKVIDPSKEKVMGHLM KSNSQIYKSHS
Sbjct: 61 PIAKVIDPSKEKVMGHLMVKSNSQIYKSHS 90

[Close]

BLAST of CSPI01G05560 vs. NCBI nr
Match: KGN63995.1 (hypothetical protein Csa_013517 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 2.7e-42
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MHSQSQLHLQLNIQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH 60
          MHSQSQLHLQLN+QKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH
Sbjct: 1  MHSQSQLHLQLNVQKILTLSMVEEKKSGGSWNVDSSPFVERREDLNYPIAFSWLTRLNEH 60

Query: 61 PIAKVIDPSKEKVMGHLMAKSNSQIYKSHS 91
          PIAKVIDPSKEKVMGHLM KSNSQIYKSHS
Sbjct: 61 PIAKVIDPSKEKVMGHLMVKSNSQIYKSHS 90

The following BLAST results are available for this feature:

BLAST of CSPI01G05560 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G05560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ42	1.3e-42	97.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033150 PE=4 SV=1	[more]

BLAST of CSPI01G05560 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63995.1	2.7e-42	97.78	hypothetical protein Csa_013517 [Cucumis sativus]	[more]

BLAST of CSPI01G05560 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G05560.1	CSPI01G05560.1	mRNA