CSPI01G04980 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G04980
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr1: 3219842 .. 3222495 (+)
RNA-Seq Expression	CSPI01G04980
Synteny	CSPI01G04980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTCGTGGAGATTCAGAAACTACTGAAGATGGAGGAATCCATGAAGTCTTTGTCGAAAAGTGTGTAATGGTTGAATGTGCAAGGGATAGTCAACAACAAAGTTCGGAAGAGATGAAGAAGTTGTTGACGGATCTATTGATTGAGATTGCGCAAGTGCGATCTAATACAATTTCAAATACAGACAGAGGAGAGTCAAATGGAAGTAAGAATGTGAAATAAATGATAGAAGGAACATCCACGATGAATGAAGCAAGGGAGTAGGAGATACAGGTGATCATTGGTTGGTCGGAGTCAGTTTTTCGACCAAACCGACACCGAACCGCCTATGGTCGGTTTAGTAAATGTTCAAATAGACCTCGATCATCAATGAGTAAATGTCGGTATGTTGATTTTTTGTTGGTCGGTTTAACTCTTTGAAATTTCTCAATTTGGAACTTTCCCAAACCAACACCGACCAACTTCGGTTTGGTCAGTCTGGTCGGTTTTTCAATCTATCATGTTCACCCCTTATAGGAGATCAGGGAGCAGATTTTAGGTAGAGTGTAGGTTTCTGCAAGGAAGCTACACTAGAGAGAAAGGAGATTAGGGATTCTTGGTAGAGTGCAGATCTTTGCAAGGAATGGAGTCTTTGCAGGGATTCATGAAGTCTTGGAAGCAATATTTCAATCCAACTGAAGCTTTGACAAAAGTCTTACTGAAGTACGATGATGTATTTGATTTGCAGAAGAATTGCCTTCGAGCTGGGGAGTAGACCATCACACTCATTTTAAAGAAGGAGAGGGCCCATTTAATTTGATGCCATATAGATATGCCCATAGTTAGAAGTTTGAGATGGAGAAAATGGTAGTTGACATGCTTAGCCCTTATTCTAGTCCAATGTTATTGGTTAAAAAAGACAGATGATGGAGGTTTTACATGGATTATAGGGTGTTGAACAACGTTACTGTTGCAGATAAATTCCCATTACCTATAGTAGATGAGTTGTTCAATGAATTAAATGGGGCAGTGTGGTTTTCTAAAATTGATTTGAAGTACTGATATCATCAGATTAGGATGCATCCTGCTGATATGGAGAACCCTGCTTTTCATACATATGAGGGTCATTACGAATTCTTGGTAATGCCTTTCGCATTGATCAATGCACCATTTACATTTCAAGCTTTGATGAATCAAATTTTTAAATCATACTTGAGGAAGTTTGTTTTGGTATTTTTTATGCTATTTTGGTATACAGTAAGAGTACGTAAGAGCATCTAGAGCATTTGGAGATAGTGTTGGCTGTGTTGGTGGACAGTGAATTATATGCTAAATTCTGCGTGGAAGATCAGAGTATTTGGGGCATATTATTTCTAGTGAAGGAGTAGAAGCTGACCCCAACAAGATACGAGCCGTGTTGGATTGGCCGGCTACTACATGTATTCGAGAGGTGTGGAGTTTTCTAGGTTTAACTGGATACTATTGAAGCTTTGTTCAGAATTATGGAAGTATGGCTGCATCACATATGCAACTGTTATAAAAAGGAGCTTATCAATGGTTGGCTGAAGCAAATGAAGCGTTTGAAGGATTGAAGAACGCCATGGTGACTTTACCTGTGTTGGTGAGGACAAAGAAGGAAATGGAACATAGGCTTAAATTATTAAAAAAAATTATTCTTTTATGGATTTTGTTTTAAGAAAGCTTTCACTAAGCCACCTATTGTTTTGAAAGGAGTATAACTTTTATTAGTTTGACAATGTATTTCATAGTTAAGTTGGGATACGTTCTTAACACGACACAACATGGTGCTTGGTGTGGCATTTTCCTTAAAAGATACTCATATCGAGACATTCTACACATGGGAGGAGTGATGTGGCGTCATGGCCTTCCAACTTACAAAAATGGTGTCGCTCCATCACTTTTTCTAGAGACTCCTCTCCAAAAGAAACCTTGTATGGATCTCTCCAAACTCTTTATAACCTTTCAAGATGCTCGAAAATTTGGAGATAATAGATTGGGATGCCATAGAGAACCACGTTGAGTGAATCTCCCACCTCTAGAACATAAAATAGAGAAGAAAAAAAGTACCCCAATGCCTTTATTTGCTTGTCAATATTTTTCCCCGAAATATTAGTTTGGTGCCGTTGATTTTGAGCCTTGAAACTAGCTCAATGGTCTCTAAATCCTAAAACCAAAAAGATGCTGTCAGTTGATTTGTTGATTACTTGTAGTTTGTATTGCAACATAAGCTTGTGTTGTTGGTGTTTAATATGTTCATGCTCCTGCATACTTCTGATATTATTCACTTATTAAGTGGGCCTCCTTCTGGTCAAATGTTTGTTGACAATTATGCAATAATTGGGCAGATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCACGACTTACTTTTGATCTTTGCCAGGAGGTCTGGCTCTCTAACTCTCTTGATTTTATTTTCTTCATTATCCGTTTGTGTCGATGGAGTTTTATGGAATATCTTTTCATGATAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGA

mRNA sequence

ATGGCAATTCGTGGAGATTCAGAAACTACTGAAGATGGAGGAATCCATGAAGTCTTTGTCGAAAAGTGTGTAATGGTTGAATGTGCAAGGGATAGTCAACAACAAAGTTCGGAAGAGATGAAGAAGTTGTTGACGGATCTATTGATTGAGATTGCGCAAGTGCGATCTAATACAATTTCAAATACAGACAGAGGAGAGTCAAATGGAATTTTTCGACCAAACCGACACCGAACCGCCTATGGTCGGTTTAGTAAATGTTCAAATAGACCTCGATCATCAATGAGTAAATGTCGATCTTTGCAAGGAATGGAGTCTTTGCAGGGATTCATGAAGTCTTGGAAGCAATATTTCAATCCAACTGAAGCTTTGACAAAAGTCTTACTGAAGTACGATGATGTATTTGATTTGCAGAAGAATTGCCTTCGAGCTGGGGAGGTGTTGAACAACGTTACTGTTGCAGATAAATTCCCATTACCTATAGTAGATGAGTTGTTCAATGAATTAAATGGGGCAATTAGGATGCATCCTGCTGATATGGAGAACCCTGCTTTTCATACATATGAGGGTCATTACGAATTCTTGGTAATGCCTTTCGCATTGATCAATGCACCATTTACATTTCAAGCTTTGATGAATCAAATTTTTAAATCATACTTGAGGAAATCAGAGTATTTGGGGCATATTATTTCTAGTGAAGGAGTAGAAGCTGACCCCAACAAGATACGAGCCGTGTTGGATTGGCCGGCTACTACATGTATTCGAGAGGTGTGGAGTTTTCTAGGAGCTTATCAATGGTTGGCTGAAGCAAATGAAGCGTTTGAAGGATTGAAGAACGCCATGGTGACTTTACCTGTGTTGTTGGGATACGTTCTTAACACGACACAACATGGTGCTTGGTGTGGCATTTTCCTTAAAAGATACTCATATCGAGACATTCTACACATGGGAGGAGTGATGTGGCGTCATGGCCTTCCAACTTACAAAAATGGTGTCGCTCCATCACTTTTTCTAGAGACTCCTCTCCAAAAGAAACCTTGTATGGATCTCTCCAAACTCTTTATAACCTTTCAAGATGCTCGAAAATTTGGAGATAATAGATTGGGATGCCATAGAGAACCACATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCACGACTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGA

Coding sequence (CDS)

ATGGCAATTCGTGGAGATTCAGAAACTACTGAAGATGGAGGAATCCATGAAGTCTTTGTCGAAAAGTGTGTAATGGTTGAATGTGCAAGGGATAGTCAACAACAAAGTTCGGAAGAGATGAAGAAGTTGTTGACGGATCTATTGATTGAGATTGCGCAAGTGCGATCTAATACAATTTCAAATACAGACAGAGGAGAGTCAAATGGAATTTTTCGACCAAACCGACACCGAACCGCCTATGGTCGGTTTAGTAAATGTTCAAATAGACCTCGATCATCAATGAGTAAATGTCGATCTTTGCAAGGAATGGAGTCTTTGCAGGGATTCATGAAGTCTTGGAAGCAATATTTCAATCCAACTGAAGCTTTGACAAAAGTCTTACTGAAGTACGATGATGTATTTGATTTGCAGAAGAATTGCCTTCGAGCTGGGGAGGTGTTGAACAACGTTACTGTTGCAGATAAATTCCCATTACCTATAGTAGATGAGTTGTTCAATGAATTAAATGGGGCAATTAGGATGCATCCTGCTGATATGGAGAACCCTGCTTTTCATACATATGAGGGTCATTACGAATTCTTGGTAATGCCTTTCGCATTGATCAATGCACCATTTACATTTCAAGCTTTGATGAATCAAATTTTTAAATCATACTTGAGGAAATCAGAGTATTTGGGGCATATTATTTCTAGTGAAGGAGTAGAAGCTGACCCCAACAAGATACGAGCCGTGTTGGATTGGCCGGCTACTACATGTATTCGAGAGGTGTGGAGTTTTCTAGGAGCTTATCAATGGTTGGCTGAAGCAAATGAAGCGTTTGAAGGATTGAAGAACGCCATGGTGACTTTACCTGTGTTGTTGGGATACGTTCTTAACACGACACAACATGGTGCTTGGTGTGGCATTTTCCTTAAAAGATACTCATATCGAGACATTCTACACATGGGAGGAGTGATGTGGCGTCATGGCCTTCCAACTTACAAAAATGGTGTCGCTCCATCACTTTTTCTAGAGACTCCTCTCCAAAAGAAACCTTGTATGGATCTCTCCAAACTCTTTATAACCTTTCAAGATGCTCGAAAATTTGGAGATAATAGATTGGGATGCCATAGAGAACCACATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCACGACTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGA

Protein sequence

MAIRGDSETTEDGGIHEVFVEKCVMVECARDSQQQSSEEMKKLLTDLLIEIAQVRSNTISNTDRGESNGIFRPNRHRTAYGRFSKCSNRPRSSMSKCRSLQGMESLQGFMKSWKQYFNPTEALTKVLLKYDDVFDLQKNCLRAGEVLNNVTVADKFPLPIVDELFNELNGAIRMHPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLRKSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFLGAYQWLAEANEAFEGLKNAMVTLPVLLGYVLNTTQHGAWCGIFLKRYSYRDILHMGGVMWRHGLPTYKNGVAPSLFLETPLQKKPCMDLSKLFITFQDARKFGDNRLGCHREPHLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY*

Homology

[Close]

BLAST of CSPI01G04980 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-14
Identity = 53/195 (27.18%), Postives = 81/195 (41.54%), Query Frame = 0


Query: 129 KYDDVFDLQKNCLRAGEVLNNVTVADKFPLPIVDELFNELNGA--------------IRM 188
           KY  V D +K        LN +T+ D++P+P +DE+  +L                 I M
Sbjct: 260 KYRVVIDYRK--------LNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEM 319

Query: 189 HPADMENPAFHTYEGHYEFLVMPFALINAPFTFQALMNQIFKSYLRK------------- 248
               +   AF T  GHYE+L MPF L NAP TFQ  MN I +  L K             
Sbjct: 320 DEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFS 379

Query: 249 -----------------------------------SEYLGHIISSEGVEADPNKIRAVLD 262
                                              + +LGHI++ +G++ +P K++A++ 
Sbjct: 380 TSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVS 439

[Close]

BLAST of CSPI01G04980 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-14
Identity = 50/177 (28.25%), Postives = 73/177 (41.24%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LN +TV D+ P+P +DE+  +L                 I M P  +   AF T  GHYE
Sbjct: 271 LNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYE 330

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLRK------------------------------- 262
           +L MPF L NAP TFQ  MN I +  L K                               
Sbjct: 331 YLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLA 390

[Close]

BLAST of CSPI01G04980 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-12
Identity = 47/177 (26.55%), Postives = 75/177 (42.37%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LN VT+ D +P+P ++     L  A              I M  +D+   AF T  G YE
Sbjct: 187 LNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYE 246

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLRK------------------------------- 262
           FL +PF L NAP  FQ +++ I + ++ K                               
Sbjct: 247 FLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLS 306

[Close]

BLAST of CSPI01G04980 vs. ExPASy Swiss-Prot
Match: Q9NP77 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens OX=9606 GN=SSU72 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-11
Identity = 40/124 (32.26%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 328 KNGVAPSLFLETPLQKKP-----CMDLSKLFITFQDARKFGDNRLGCHREPHLNTRDHAM 387
           +NG+   L     ++ +P     C DL  L +T ++       R+       LN+R+   
Sbjct: 78  QNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEE-------RVYDQVVEDLNSREQET 137

Query: 388 MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYS 447
            + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L++
Sbjct: 138 CQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHT 194

[Close]

BLAST of CSPI01G04980 vs. ExPASy Swiss-Prot
Match: Q9CY97 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus OX=10090 GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-11
Identity = 40/124 (32.26%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 328 KNGVAPSLFLETPLQKKP-----CMDLSKLFITFQDARKFGDNRLGCHREPHLNTRDHAM 387
           +NG+   L     ++ +P     C DL  L +T ++       R+       LN+R+   
Sbjct: 78  QNGILHMLDRNKRIKPRPERFQNCTDLFDLILTCEE-------RVYDQVVEDLNSREQET 137

Query: 388 MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYS 447
            + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L++
Sbjct: 138 CQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHT 194

[Close]

BLAST of CSPI01G04980 vs. ExPASy TrEMBL
Match: A0A5A7SUY2 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00290 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.4e-38
Identity = 91/185 (49.19%), Postives = 109/185 (58.92%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVT+  KFP+P+++ELF+EL GA              I+M P D+E  AF T+EGHYE
Sbjct: 375 LNNVTIPGKFPIPVIEELFDELKGANIFSKIDLKAGYHQIQMCPEDIEKTAFRTHEGHYE 434

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGHIISSEGVEADPNKIRAVLDW 266
           FLVMPF L NAP TFQALMNQ+FK YLR     +  YLGH IS +G+E DP KI+A+ +W
Sbjct: 435 FLVMPFRLTNAPSTFQALMNQVFKPYLRSFAKPRIGYLGHFISKKGIEVDPEKIKAINEW 494

Query: 267 PATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMV 287
           P  T +REV  FL                          GAYQW  EA   FE LK AM+
Sbjct: 495 PIPTNVREVRGFLGLTGYYRRFVKDYGTLAAPLTQLLKTGAYQWNGEAEAVFEKLKKAMM 554

[Close]

BLAST of CSPI01G04980 vs. ExPASy TrEMBL
Match: A0A5D3CTA1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00220 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.8e-36
Identity = 95/228 (41.67%), Postives = 113/228 (49.56%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVTV DKFP+P+V+ELF+ELNGA              IRMHP D+E  AF T+EGHYE
Sbjct: 232 LNNVTVPDKFPIPVVEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYE 291

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-------------------------------- 266
           F+VMPF L NAP TFQALMNQ+FK +LR                                
Sbjct: 292 FMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILR 351

Query: 267 ----------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL---- 287
                           +  YLGH IS +G+E DP KIRAV +WPA + +RE+  FL    
Sbjct: 352 ESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPSNVRELRGFLGLTG 411

[Close]

BLAST of CSPI01G04980 vs. ExPASy TrEMBL
Match: A0A5A7VEI2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001140 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.8e-36
Identity = 95/228 (41.67%), Postives = 113/228 (49.56%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVTV DKFP+P+V+ELF+ELNGA              IRMHP D+E  AF T+EGHYE
Sbjct: 321 LNNVTVPDKFPIPVVEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYE 380

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-------------------------------- 266
           F+VMPF L NAP TFQALMNQ+FK +LR                                
Sbjct: 381 FMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILR 440

Query: 267 ----------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL---- 287
                           +  YLGH IS +G+E DP KIRAV +WPA + +RE+  FL    
Sbjct: 441 ESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPSNVRELRGFLGLTG 500

[Close]

BLAST of CSPI01G04980 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-35
Identity = 95/228 (41.67%), Postives = 112/228 (49.12%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVTV DKFP+P+V+ELF+ELNGA              IRMHP D+E  AF T+EGHYE
Sbjct: 741 LNNVTVPDKFPIPVVEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYE 800

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-------------------------------- 266
           F+VMPF L NAP TFQALMNQ+FK +LR                                
Sbjct: 801 FMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILR 860

Query: 267 ----------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL---- 287
                           +  YLGH IS +G+E DP KIRAV +WPA   +RE+  FL    
Sbjct: 861 ESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTG 920

[Close]

BLAST of CSPI01G04980 vs. ExPASy TrEMBL
Match: A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-35
Identity = 95/228 (41.67%), Postives = 112/228 (49.12%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVTV DKFP+P+V+ELF+ELNGA              IRMHP D+E  AF T+EGHYE
Sbjct: 741 LNNVTVPDKFPIPVVEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYE 800

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-------------------------------- 266
           F+VMPF L NAP TFQALMNQ+FK +LR                                
Sbjct: 801 FMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILR 860

Query: 267 ----------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL---- 287
                           +  YLGH IS +G+E DP KIRAV +WPA   +RE+  FL    
Sbjct: 861 ESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTG 920

[Close]

BLAST of CSPI01G04980 vs. NCBI nr
Match: KAA0033137.1 (polyprotein [Cucumis melo var. makuwa] >TYK17096.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-37
Identity = 91/185 (49.19%), Postives = 109/185 (58.92%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVT+  KFP+P+++ELF+EL GA              I+M P D+E  AF T+EGHYE
Sbjct: 375 LNNVTIPGKFPIPVIEELFDELKGANIFSKIDLKAGYHQIQMCPEDIEKTAFRTHEGHYE 434

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGHIISSEGVEADPNKIRAVLDW 266
           FLVMPF L NAP TFQALMNQ+FK YLR     +  YLGH IS +G+E DP KI+A+ +W
Sbjct: 435 FLVMPFRLTNAPSTFQALMNQVFKPYLRSFAKPRIGYLGHFISKKGIEVDPEKIKAINEW 494

Query: 267 PATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMV 287
           P  T +REV  FL                          GAYQW  EA   FE LK AM+
Sbjct: 495 PIPTNVREVRGFLGLTGYYRRFVKDYGTLAAPLTQLLKTGAYQWNGEAEAVFEKLKKAMM 554

[Close]

BLAST of CSPI01G04980 vs. NCBI nr
Match: TYK06599.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 8.2e-36
Identity = 89/184 (48.37%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVT+ DKFP+ +++ELF+ELNG               IRM P D+E  AF T+EGHYE
Sbjct: 363 LNNVTILDKFPILVIEELFDELNGTNVFSKIDLKARYHQIRMCPDDIEKIAFRTHEGHYE 422

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGHIISSEGVEADPNKIRAVLDW 266
           FLVMPF L NAP TFQALMNQ+FK Y+R     +  YLGH IS + +E DP KIRA+ +W
Sbjct: 423 FLVMPFRLTNAPSTFQALMNQVFKPYMRSFAKPQIGYLGHFISEKDIEVDPEKIRAIREW 482

Query: 267 PATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMV 286
           P  T +REV  FL                          GAY+W  EA+ AFE LK AM+
Sbjct: 483 PVPTNVREVRGFLGVTGYYRRFVQNYDTIAAPLTQLSKTGAYKWSEEADVAFEKLKLAMM 542

[Close]

BLAST of CSPI01G04980 vs. NCBI nr
Match: KAA0037052.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 8.2e-36
Identity = 89/184 (48.37%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVT+ DKFP+ +++ELF+ELNG               IRM P D+E  AF T+EGHYE
Sbjct: 363 LNNVTILDKFPILVIEELFDELNGTNVFSKIDLKARYHQIRMCPDDIEKIAFRTHEGHYE 422

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-----KSEYLGHIISSEGVEADPNKIRAVLDW 266
           FLVMPF L NAP TFQALMNQ+FK Y+R     +  YLGH IS + +E DP KIRA+ +W
Sbjct: 423 FLVMPFRLTNAPSTFQALMNQVFKPYMRSFAKPQIGYLGHFISEKDIEVDPEKIRAIREW 482

Query: 267 PATTCIREVWSFL--------------------------GAYQWLAEANEAFEGLKNAMV 286
           P  T +REV  FL                          GAY+W  EA+ AFE LK AM+
Sbjct: 483 PVPTNVREVRGFLGVTGYYRRFVQNYDTIAAPLTQLSKTGAYKWSEEADVAFEKLKLAMM 542

[Close]

BLAST of CSPI01G04980 vs. NCBI nr
Match: KAA0066118.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-35
Identity = 95/228 (41.67%), Postives = 113/228 (49.56%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVTV DKFP+P+V+ELF+ELNGA              IRMHP D+E  AF T+EGHYE
Sbjct: 321 LNNVTVPDKFPIPVVEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYE 380

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-------------------------------- 266
           F+VMPF L NAP TFQALMNQ+FK +LR                                
Sbjct: 381 FMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILR 440

Query: 267 ----------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL---- 287
                           +  YLGH IS +G+E DP KIRAV +WPA + +RE+  FL    
Sbjct: 441 ESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPSNVRELRGFLGLTG 500

[Close]

BLAST of CSPI01G04980 vs. NCBI nr
Match: TYK15157.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-35
Identity = 95/228 (41.67%), Postives = 113/228 (49.56%), Query Frame = 0


Query: 147 LNNVTVADKFPLPIVDELFNELNGA--------------IRMHPADMENPAFHTYEGHYE 206
           LNNVTV DKFP+P+V+ELF+ELNGA              IRMHP D+E  AF T+EGHYE
Sbjct: 232 LNNVTVPDKFPIPVVEELFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYE 291

Query: 207 FLVMPFALINAPFTFQALMNQIFKSYLR-------------------------------- 266
           F+VMPF L NAP TFQALMNQ+FK +LR                                
Sbjct: 292 FMVMPFGLTNAPSTFQALMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILR 351

Query: 267 ----------------KSEYLGHIISSEGVEADPNKIRAVLDWPATTCIREVWSFL---- 287
                           +  YLGH IS +G+E DP KIRAV +WPA + +RE+  FL    
Sbjct: 352 ESELYANFDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWPAPSNVRELRGFLGLTG 411

[Close]

BLAST of CSPI01G04980 vs. TAIR 10
Match: AT1G73820.1 (Ssu72-like family protein )

HSP 1 Score: 110.9 bits (276), Expect = 2.6e-24
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 375 LNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQ 434
           LN R+ ++ KT+L++NLEVKDNHEEAAIG RL  +LCQEIE  E+WED+IDDIV  FEKQ
Sbjct: 122 LNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEKQ 181

Query: 435 LRRKLLYSISFY 447
            RRKL+YSISFY
Sbjct: 182 HRRKLVYSISFY 193

[Close]

BLAST of CSPI01G04980 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 3.2e-06
Identity = 33/91 (36.26%), Postives = 41/91 (45.05%), Query Frame = 0


Query: 224 YLG--HIISSEGVEADPNKIRAVLDWPATTCIREVWSFLG-------------------- 283
           YLG  HIIS EGV ADP K+ A++ WP      E+  FLG                    
Sbjct: 32  YLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLT 91

Query: 284 ------AYQWLAEANEAFEGLKNAMVTLPVL 287
                 + +W   A  AF+ LK A+ TLPVL
Sbjct: 92  ELLKKNSLKWTEMAALAFKALKGAVTTLPVL 122

The following BLAST results are available for this feature:

BLAST of CSPI01G04980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.1e-14	27.18	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	5.4e-14	28.25	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.0e-12	26.55	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q9NP77	1.9e-11	32.26	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ...	[more]
Q9CY97	1.9e-11	32.26	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ...	[more]

BLAST of CSPI01G04980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUY2	9.4e-38	49.19	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00290 P...	[more]
A0A5D3CTA1	8.8e-36	41.67	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VEI2	8.8e-36	41.67	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CXB1	1.2e-35	41.67	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U2S1	1.2e-35	41.67	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CSPI01G04980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033137.1	1.9e-37	49.19	polyprotein [Cucumis melo var. makuwa] >TYK17096.1 polyprotein [Cucumis melo var...	[more]
TYK06599.1	8.2e-36	48.37	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037052.1	8.2e-36	48.37	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066118.1	1.8e-35	41.67	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK15157.1	1.8e-35	41.67	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G04980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73820.1	2.6e-24	70.83	Ssu72-like family protein	[more]
ATMG00860.1	3.2e-06	36.26	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 374..446 e-value: 3.5E-16 score: 59.3
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE	coord: 374..446
None	No IPR available	GENE3D	3.40.50.2300		coord: 344..446 e-value: 2.9E-21 score: 77.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 147..202 e-value: 4.7E-11 score: 44.4
None	No IPR available	PANTHER	PTHR20383:SF9	RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE SSU72	coord: 374..446
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 156..228 e-value: 4.7E-11 score: 44.4
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 147..289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G04980.1	CSPI01G04980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005488	binding
molecular_function	GO:0004721	phosphoprotein phosphatase activity