CSPI01G03840 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G03840
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	VQ motif-containing protein 20
Location	Chr1: 2396902 .. 2397664 (+)
RNA-Seq Expression	CSPI01G03840
Synteny	CSPI01G03840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGAAGAAAACCCTAAATCAAGAATGAGTCCTCAACAACAGCAACAACAAATCCATGGAAAAATGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACCGCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGCCAATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCACACGCATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTGGCTACAACGAAATCCGCCGTGGATGAGAATAATAATAATAATAATAATAATAATGGTTCTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCGTCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAGGTTAATTCGTGTTTTGGACCGGCGATTTTTGAGCCGCCGCCACCTCCGCCACAACTGGCGAATTCTTACCTGACGAATATACCCATTTATACGCCGAATTCGACGGAGTTCTTGTGCACGAATCAACCAATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGCAACAGATCAGTTAATGATTTCTGCGAATACAGTGAATTTTAG

mRNA sequence

GTTTGAAGAAAACCCTAAATCAAGAATGAGTCCTCAACAACAGCAACAACAAATCCATGGAAAAATGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACCGCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGCCAATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCACACGCATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTGGCTACAACGAAATCCGCCGTGGATGAGAATAATAATAATAATAATAATAATAATGGTTCTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCGTCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAGGTTAATTCGTGTTTTGGACCGGCGATTTTTGAGCCGCCGCCACCTCCGCCACAACTGGCGAATTCTTACCTGACGAATATACCCATTTATACGCCGAATTCGACGGAGTTCTTGTGCACGAATCAACCAATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGCAACAGATCAGTTAATGATTTCTGCGAATACAGTGAATTTTAG

Coding sequence (CDS)

ATGAGTCCTCAACAACAGCAACAACAAATCCATGGAAAAATGGATAATCAGATCACCAACAATGGGAATAATAAACCAATATTGTGTCCACCGCCATTGAAGATCAATAAGGATTCTCATTTGATTCGAAAAACTTCCTCTTCTTCAAATACTTCTTCCCCTTCTTCCTCTTCATCTTCCACCACCTCTCTTGCCAATGGGGTCGCTGCTGCTGCTGCGAAGCCACCACCTCAACGACATCCGGTGATTATATACACACATTCTCCCAAAATCATTCACACGCATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCAGATCATGATCATGAAGCTTCTACCACGAAGCTGGCTACAACGAAATCCGCCGTGGATGAGAATAATAATAATAATAATAATAATAATGGTTCTAAAGCTGCTGTTGTGAATGATGATAATGAATCGTCGTCCGTTGTGACGACGGATGAAAATTGTTGCGGCGGCGGTGGAAGCGGTTTGATGGAAGTTGGTCAGGTTAATTCGTGTTTTGGACCGGCGATTTTTGAGCCGCCGCCACCTCCGCCACAACTGGCGAATTCTTACCTGACGAATATACCCATTTATACGCCGAATTCGACGGAGTTCTTGTGCACGAATCAACCAATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGCAACAGATCAGTTAATGATTTCTGCGAATACAGTGAATTTTAG

Protein sequence

MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSAVDENNNNNNNNNGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDFCEYSEF*

Homology

[Close]

BLAST of CSPI01G03840 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-26
Identity = 102/272 (37.50%), Postives = 130/272 (47.79%), Query Frame = 0


Query: 11  HGKMDNQITNNG---NNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANG 70
           H K +    N+G      P   PP LK+NKDSH+I+K        SPSS SS        
Sbjct: 21  HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKK------PPSPSSFSS-------- 80

Query: 71  VAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHD----------HE 130
               AAKP   RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD D            
Sbjct: 81  ----AAKP---RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGV 140

Query: 131 ASTTKLATTKSAVDENNNNNNNNNGS-----------------KAAVVNDDNESSSVVTT 190
             +     ++  VD  NN N    G+                    ++++D+ESSSV+TT
Sbjct: 141 VKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITT 200

Query: 191 DENCCGGGGSGLMEVGQVNSCF----------GPAIFEPPPPPPQLAN-------SYLTN 234
           +EN        + E GQVNS             P    PPPPPP + +       +YL  
Sbjct: 201 EEN--------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYLPT 260

[Close]

BLAST of CSPI01G03840 vs. ExPASy TrEMBL
Match: A0A0A0LPK7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023620 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.1e-107
Identity = 210/245 (85.71%), Postives = 211/245 (86.12%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+           
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGIC---------- 120

Query: 121 TKLATTKSAVDENNNNNNNNNGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNS 180
                                  KAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNS
Sbjct: 121 ---------------------CCKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNS 180

Query: 181 CFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDFC 240
           CFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDFC
Sbjct: 181 CFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDFC 214

Query: 241 EYSEF 246
           EYSEF
Sbjct: 241 EYSEF 214

[Close]

BLAST of CSPI01G03840 vs. ExPASy TrEMBL
Match: A0A1S3BXM8 (VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.3e-100
Identity = 218/254 (85.83%), Postives = 221/254 (87.01%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSN--TSSPSSSS 60
           MSP   QQQIHGK DNQI NNG NKPILCPPPLKINKDSHLIRKTSSSSN  TSSPSSSS
Sbjct: 1   MSP---QQQIHGKRDNQINNNG-NKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSS 60

Query: 61  SSTTSLANGV--AAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDH 120
           SSTTSL NGV  AAAAA  P QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSD DH
Sbjct: 61  SSTTSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSD-DH 120

Query: 121 EASTTKLATTKSAVDENNNNNNNNNGSKAAVVNDDNESSSVVTTDENCC-GGGGSGLMEV 180
           EAS TKLATTK  VDE   NNNNN GSK AVV+DDNESSSVVTTDENCC GGGGSG+MEV
Sbjct: 121 EAS-TKLATTKPVVDE---NNNNNKGSK-AVVSDDNESSSVVTTDENCCGGGGGSGMMEV 180

Query: 181 GQVNSCFGPAIFEPP-----PPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLF 240
           GQVNSCFGP IFEPP     PPPPQLANSYLTNIPIYTPNS EFLC NQPIFNYDDSLLF
Sbjct: 181 GQVNSCFGPVIFEPPPPPPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLF 240

Query: 241 GGNRSVNDFCEYSE 245
           GGNR VNDFCEYSE
Sbjct: 241 GGNRVVNDFCEYSE 244

[Close]

BLAST of CSPI01G03840 vs. ExPASy TrEMBL
Match: A0A0A0LKA6 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.7e-85
Identity = 192/251 (76.49%), Postives = 201/251 (80.08%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSP QQQQQIHGK DNQ TNN  NKP+  PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSP-QQQQQIHGKRDNQ-TNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSL NGV   AA  PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAST
Sbjct: 61  TTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNNGSKAAVVNDDNESSSVVTTDENCCGG-GGSGLMEVGQVN 180
              AT KS VDENN          + VVNDDNESSSVVTTDENCCGG G SG +E GQVN
Sbjct: 121 K--ATAKSVVDENN--------KASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVN 180

Query: 181 SCFGPAIFE--PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGN---R 240
           SCFGPAIFE  PPPPPPQLA+SYL+NIP+Y PNSTEFLC NQPIFNYDDSLLFG N    
Sbjct: 181 SCFGPAIFEPPPPPPPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSL 237

Query: 241 SVNDFCEYSEF 246
           S N   ++SEF
Sbjct: 241 SSNGVSDFSEF 237

[Close]

BLAST of CSPI01G03840 vs. ExPASy TrEMBL
Match: A0A5A7V0G0 (VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001740 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.4e-83
Identity = 192/254 (75.59%), Postives = 201/254 (79.13%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQ QQQQIHGK DNQI NN  NKP L PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQHQQQQIHGKRDNQINNNA-NKP-LSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSL NGV  A AK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAST
Sbjct: 61  TTSLVNGVPTAVAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNNGSKAAVVNDDNESSSVVTTDENCC-GGGGSGLMEVGQVN 180
              AT KS VDENN          + VVNDDNESSSV+TTDENCC G G SG +E GQVN
Sbjct: 121 K--ATAKS-VDENN--------KVSKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVN 180

Query: 181 SCFGPAIFE----PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNR- 240
           SCFGPA FE    PPPPPPQLANSYLTN+P+Y PNSTEFLC NQPIFNYDDSLLFGG+  
Sbjct: 181 SCFGPASFEPPPPPPPPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNI 238

Query: 241 ---SVNDFCEYSEF 246
              S N   ++SEF
Sbjct: 241 PSLSSNGISDFSEF 238

[Close]

BLAST of CSPI01G03840 vs. ExPASy TrEMBL
Match: A0A1S3BCI6 (VQ motif-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103488533 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 2.0e-82
Identity = 192/254 (75.59%), Postives = 201/254 (79.13%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQ QQQQIHGK DNQI NN  NKP L PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQHQQQQIHGKRDNQINNNA-NKP-LSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSL NGV  A AK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAST
Sbjct: 61  TTSLVNGVPTAVAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNNGSKAAVVNDDNESSSVVTTDENCC-GGGGSGLMEVGQVN 180
              AT KS VDENN  +         VVNDDNESSSV+TTDENCC G G SG +E GQVN
Sbjct: 121 K--ATAKS-VDENNKISK--------VVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVN 180

Query: 181 SCFGPAIFE----PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNR- 240
           SCFGPA FE    PPPPPPQLANSYLTN+P+Y PNSTEFLC NQPIFNYDDSLLFGG+  
Sbjct: 181 SCFGPASFEPPPPPPPPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNI 238

Query: 241 ---SVNDFCEYSEF 246
              S N   ++SEF
Sbjct: 241 PSLSSNGISDFSEF 238

[Close]

BLAST of CSPI01G03840 vs. NCBI nr
Match: XP_004138347.3 (VQ motif-containing protein 20 [Cucumis sativus])

HSP 1 Score: 473.0 bits (1216), Expect = 1.6e-129
Identity = 245/246 (99.59%), Postives = 245/246 (99.59%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNN-GSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVN 180
           TKLATTKSAVDENNNNNNNNN GSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVN
Sbjct: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVN 180

Query: 181 SCFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDF 240
           SCFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDF
Sbjct: 181 SCFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGNRSVNDF 240

Query: 241 CEYSEF 246
           CEYSEF
Sbjct: 241 CEYSEF 246

[Close]

BLAST of CSPI01G03840 vs. NCBI nr
Match: KGN63830.2 (hypothetical protein Csa_013231 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 4.0e-109
Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNN-GSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVN 180
           TKLATTKSAVDENNNNNNNNN GSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVN
Sbjct: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVN 180

Query: 181 SCFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEF 215
           SCFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEF
Sbjct: 181 SCFGPAIFEPPPPPPQLANSYLTNIPIYTPNSTEF 215

[Close]

BLAST of CSPI01G03840 vs. NCBI nr
Match: XP_008453685.1 (PREDICTED: VQ motif-containing protein 20 [Cucumis melo])

HSP 1 Score: 375.9 bits (964), Expect = 2.6e-100
Identity = 218/254 (85.83%), Postives = 221/254 (87.01%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSN--TSSPSSSS 60
           MSP   QQQIHGK DNQI NNG NKPILCPPPLKINKDSHLIRKTSSSSN  TSSPSSSS
Sbjct: 1   MSP---QQQIHGKRDNQINNNG-NKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSS 60

Query: 61  SSTTSLANGV--AAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDH 120
           SSTTSL NGV  AAAAA  P QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSD DH
Sbjct: 61  SSTTSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSD-DH 120

Query: 121 EASTTKLATTKSAVDENNNNNNNNNGSKAAVVNDDNESSSVVTTDENCC-GGGGSGLMEV 180
           EAS TKLATTK  VDE   NNNNN GSK AVV+DDNESSSVVTTDENCC GGGGSG+MEV
Sbjct: 121 EAS-TKLATTKPVVDE---NNNNNKGSK-AVVSDDNESSSVVTTDENCCGGGGGSGMMEV 180

Query: 181 GQVNSCFGPAIFEPP-----PPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLF 240
           GQVNSCFGP IFEPP     PPPPQLANSYLTNIPIYTPNS EFLC NQPIFNYDDSLLF
Sbjct: 181 GQVNSCFGPVIFEPPPPPPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLF 240

Query: 241 GGNRSVNDFCEYSE 245
           GGNR VNDFCEYSE
Sbjct: 241 GGNRVVNDFCEYSE 244

[Close]

BLAST of CSPI01G03840 vs. NCBI nr
Match: XP_038876677.1 (VQ motif-containing protein 20 [Benincasa hispida])

HSP 1 Score: 328.6 bits (841), Expect = 4.7e-86
Identity = 201/260 (77.31%), Postives = 208/260 (80.00%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMD--NQITNNGN---NKPILCPPPLKINKDSHLIRKTSSSSNTSSPS 60
           MSP Q QQQ+HGK D  NQ  NNGN   NKP LCPPPLKINKDSHLIRK+SSSSNTSSPS
Sbjct: 1   MSP-QPQQQLHGKRDNQNQSINNGNGNGNKP-LCPPPLKINKDSHLIRKSSSSSNTSSPS 60

Query: 61  SSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHD 120
           SSSSSTTSL NGV       PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D
Sbjct: 61  SSSSSTTSLVNGV------KPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--D 120

Query: 121 HEASTTKLATTKSAVDENNNNNNNNNGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEV 180
            EAST   ATTKS VDE      NN GSK AVVNDDNESSSVVTTDENCC GGGSG++E 
Sbjct: 121 DEASTK--ATTKS-VDE------NNKGSKKAVVNDDNESSSVVTTDENCC-GGGSGVVEG 180

Query: 181 GQVNSCFGPAIFE--PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQP-IFNYDDSLLFG- 240
           GQVNSCFG AIFE  PPPPPPQLANSYLTNIP+Y PNSTEFLCTNQP  FNYDDSLLFG 
Sbjct: 181 GQVNSCFGAAIFEPPPPPPPPQLANSYLTNIPVYRPNSTEFLCTNQPSFFNYDDSLLFGA 240

Query: 241 ------GNRSVNDFCEYSEF 246
                  +  +NDFCEYSEF
Sbjct: 241 HNIPSLSSNGINDFCEYSEF 240

[Close]

BLAST of CSPI01G03840 vs. NCBI nr
Match: KGN62345.1 (hypothetical protein Csa_018596 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.2e-84
Identity = 192/251 (76.49%), Postives = 201/251 (80.08%), Query Frame = 0


Query: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60
           MSP QQQQQIHGK DNQ TNN  NKP+  PP LKINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSP-QQQQQIHGKRDNQ-TNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSS 60

Query: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120
           TTSL NGV   AA  PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAST
Sbjct: 61  TTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAST 120

Query: 121 TKLATTKSAVDENNNNNNNNNGSKAAVVNDDNESSSVVTTDENCCGG-GGSGLMEVGQVN 180
              AT KS VDENN          + VVNDDNESSSVVTTDENCCGG G SG +E GQVN
Sbjct: 121 K--ATAKSVVDENN--------KASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVN 180

Query: 181 SCFGPAIFE--PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGN---R 240
           SCFGPAIFE  PPPPPPQLA+SYL+NIP+Y PNSTEFLC NQPIFNYDDSLLFG N    
Sbjct: 181 SCFGPAIFEPPPPPPPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSL 237

Query: 241 SVNDFCEYSEF 246
           S N   ++SEF
Sbjct: 241 SSNGVSDFSEF 237

[Close]

BLAST of CSPI01G03840 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-27
Identity = 102/272 (37.50%), Postives = 130/272 (47.79%), Query Frame = 0


Query: 11  HGKMDNQITNNG---NNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANG 70
           H K +    N+G      P   PP LK+NKDSH+I+K        SPSS SS        
Sbjct: 21  HPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKK------PPSPSSFSS-------- 80

Query: 71  VAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHD----------HE 130
               AAKP   RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD D            
Sbjct: 81  ----AAKP---RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGV 140

Query: 131 ASTTKLATTKSAVDENNNNNNNNNGS-----------------KAAVVNDDNESSSVVTT 190
             +     ++  VD  NN N    G+                    ++++D+ESSSV+TT
Sbjct: 141 VKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITT 200

Query: 191 DENCCGGGGSGLMEVGQVNSCF----------GPAIFEPPPPPPQLAN-------SYLTN 234
           +EN        + E GQVNS             P    PPPPPP + +       +YL  
Sbjct: 201 EEN--------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYLPT 260

[Close]

BLAST of CSPI01G03840 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.6e-05
Identity = 40/109 (36.70%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 30  PPPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHS 89
           P PLK+  DSH +I+K   +     P    +           + ++PPP   PVIIYT S
Sbjct: 16  PIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE------PSQSRPPP--GPVIIYTVS 75

Query: 90  PKIIHTHPRDFMALVQKLTG---MSRSDHDHEASTTKLATTKSAVDENN 135
           P+IIHTHP +FM LVQ+LTG    S +   + +ST+      + VD ++
Sbjct: 76  PRIIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKDASTMVDTSH 116

[Close]

BLAST of CSPI01G03840 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 45.4 bits (106), Expect = 7.5e-05
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 14  MDNQI-TNNGNNKPILCPPPLKINKDSH-LIRKTSSSSNTSSPSSSSSSTTSLANGVAAA 73
           MDN+   + GN  P   P PLK+  DSH +I+K   +     P    +           +
Sbjct: 1   MDNRSPRSRGNMGP--KPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE------PS 60

Query: 74  AAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGM---SRSDHDHEASTTKLATTKS 133
            ++PPP   PV IYT +P+IIHTHP +FM LVQ+LTG    S +     +ST++   T +
Sbjct: 61  QSRPPP--GPVNIYTVTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTST 116

Query: 134 AVDENN 135
            VD ++
Sbjct: 121 MVDTSH 116

[Close]

BLAST of CSPI01G03840 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 40/114 (35.09%), Postives = 53/114 (46.49%), Query Frame = 0


Query: 30  PPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAAAAAKPPPQRHPVIIYTHSP 89
           P  LK+  +SH I+KTSS  +   P   +S                     PVIIY HSP
Sbjct: 14  PSSLKLAGESHTIKKTSSCKSKPRPHGRAS---------------------PVIIYAHSP 73

Query: 90  KIIHTHPRDFMALVQKLTGMSRSDHDHEASTTKLATTKSAVDENNNNNNNNNGS 144
           K+IHT   DFMALVQ+LTG+     D         ++ S V E  N  ++N  +
Sbjct: 74  KVIHTRAEDFMALVQRLTGL-----DEIIRRNTSESSSSVVTEEVNVGDDNTAA 101

The following BLAST results are available for this feature:

BLAST of CSPI01G03840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	2.6e-26	37.50	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]

BLAST of CSPI01G03840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPK7	3.1e-107	85.71	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023620 PE=4 SV=...	[more]
A0A1S3BXM8	1.3e-100	85.83	VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1	[more]
A0A0A0LKA6	5.7e-85	76.49	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=...	[more]
A0A5A7V0G0	2.4e-83	75.59	VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BCI6	2.0e-82	75.59	VQ motif-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103488533 PE=4...	[more]

BLAST of CSPI01G03840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138347.3	1.6e-129	99.59	VQ motif-containing protein 20 [Cucumis sativus]	[more]
KGN63830.2	4.0e-109	99.53	hypothetical protein Csa_013231 [Cucumis sativus]	[more]
XP_008453685.1	2.6e-100	85.83	PREDICTED: VQ motif-containing protein 20 [Cucumis melo]	[more]
XP_038876677.1	4.7e-86	77.31	VQ motif-containing protein 20 [Benincasa hispida]	[more]
KGN62345.1	1.2e-84	76.49	hypothetical protein Csa_018596 [Cucumis sativus]	[more]

BLAST of CSPI01G03840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	1.8e-27	37.50	VQ motif-containing protein	[more]
AT1G21326.1	2.6e-05	36.70	VQ motif-containing protein	[more]
AT1G21320.1	7.5e-05	35.71	nucleotide binding;nucleic acid binding	[more]
AT1G68450.1	1.3e-04	35.09	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 86..110 e-value: 1.7E-11 score: 43.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
IPR039832	VQ motif-containing protein 20	PANTHER	PTHR33143:SF4	VQ MOTIF-CONTAINING PROTEIN 20	coord: 1..244
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 1..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G03840.1	CSPI01G03840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding