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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATTTGGACCAGTTGGGACGAGGCGTTTTTCGACGCCATATCGAGGATCAATCTCGGTTCCAACCTCGGGAGAATCAGTGTGATGGTGGTGACGGTGGTGACGGTGATGGTGGTGGTGATGAGGATGATTATCAACATGGAGATGTTGGAGAAAGAGAGTGA mRNA sequence ATGGATTTGGACCAGTTGGGACGAGGCGTTTTTCGACGCCATATCGAGGATCAATCTCGGTTCCAACCTCGGGAGAATCAGTGTGATGGTGGTGACGGTGGTGACGGTGATGGTGGTGGTGATGAGGATGATTATCAACATGGAGATGTTGGAGAAAGAGAGTGA Coding sequence (CDS) ATGGATTTGGACCAGTTGGGACGAGGCGTTTTTCGACGCCATATCGAGGATCAATCTCGGTTCCAACCTCGGGAGAATCAGTGTGATGGTGGTGACGGTGGTGACGGTGATGGTGGTGGTGATGAGGATGATTATCAACATGGAGATGTTGGAGAAAGAGAGTGA Protein sequence MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGDVGERE*
Homology
BLAST of CSPI01G03560 vs. ExPASy TrEMBL
Match: A0A0A0LUT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015880 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 7.8e-19 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
Query: 1 MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD 50
MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD
Sbjct: 1 MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD 49
BLAST of CSPI01G03560 vs. NCBI nr
Match: KGN63796.1 (hypothetical protein Csa_013253 [Cucumis sativus]) HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18 Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0
Query: 1 MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD 50
MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD
Sbjct: 1 MDLDQLGRGVFRRHIEDQSRFQPRENQCDGGDGGDGDGGGDEDDYQHGD 49
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LUT7 | 7.8e-19 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015880 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN63796.1 | 1.6e-18 | 100.00 | hypothetical protein Csa_013253 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 40..54 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..23 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..54 |
Relationships
The following mRNA feature(s) are a part of this gene:
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