CSPI01G03380 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G03380
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 2124775 .. 2126955 (+)
RNA-Seq ExpressionCSPI01G03380
SyntenyCSPI01G03380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGACCTGATGGCTGTCTGAAGATATCATTCCACAATTGGTCAGTTTTTCCATGGATAAGCCTGTAGTAAAACAACCATAATCGGCAGGATGGTCGACAAGACACAGAGCCAGACATAGTCAAATTTCAACAAGAACACTGTGAGTCATCATCACCAAGCGATAACTGATTAAAGCAAAACCAGCTATATTTGTAGAAGTACTAGTAACTTCCATGTTCTAACTTCTCGGCGTCAGTTAAACCAAATATGAACAAGAAGTACCTTCATTTTACTCTATGTGGATAGATATTATGGCATTAACAACAATGCAACACTTTTTCAAGGTACATTTTCCTAAACCAACCTGGAATTTTGATCCACCAAAAGTTTGACCTTGTTCCTTTTGTCCAATATAATGGAATGACATGTCAGAGTTGCCATTTTCCTGTATCAGTTTCAGCTAAACACAACAGGGTAAAATCAAAAACCTCTTATTTCTCTGCTGCTAATATTATAAAGGGAAGGAGGGGCAGATGCAAAAGAATGGATAAACAAACGTCAATTCATATGCATTAAATTCTAGTGCTACATTATCAAAATGCTCTACGCATTCCTCTTCTCGGTTTCTTAACAAAACTCAATCGAATTTGCTTCAGTCGTCGCCTTTTTCTCGCCATTTTCTCTGGCAATGTCTCCCTCTTCTTTGCAACCTTCTTATCCTTTGGCTTCTTTACATATTTCGGATCCACCTGATATGCTTTTGGAGTAACTGGTACACCCCGTTTTTGAGCTTCGTTAAAGAGTGAATTCGCTTTGTCCAAACGATTGTGGGCACAAAGTTTTCCCATCAATAGATCATATGTTTTAATCCCAGGTTCACACCCATCCTTCTTCATCTTTGCAAATACAACCAGTGCATGATCAATTCTCTCAATCCCACACAAAATATTCATAAACTCATAATAGGCCTTCTTATCAAGTGCATCTCCATATCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCTCCCGTTCGTGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTAACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCGACATTTCGTGGAACCCCACGACAGTCCATTTCCACCAGAATTTCCTCAGCTTCAGAATCAAGTCTAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGCAAAGCATTATATGCCGTTGTCCCTAACTCGAACCCGCCCCTGTACATCTCACCCGCTAGCCTTTTAGCTTCATCAAGTTTCTCATTCACACACCATCCTTTGATCAGAGTATCGCATATTGCTTCATCAGGGAAAAATTCATTAGCCAAGTCTTTGACCATCTTTTCAGCATGGCTCCCGAACCCATTTTCACAAAGCTTCTCCACTACCATCCTAAGCGACTCTTTATCCCTCTTAAGCCCGTAATTCTTCTCCATCGTCTCAAAAAATGAGATCAACTTAGTGGGTCGCCCAGCACGAGCGAACCGATGAATAGACGACTTAAGGGTTTTAGGCCCATTGATCCCTAAACCTTTCGCAAGGACTTCCTGAACCGCATTGAAATCTTTTCTACGACCAAAGAAATCAACAAAATACGATATAGTTTCATCAGTGTGATGAAAATCAGGATTCGATACTAACCATTCATTAAACCCTAACACTGTACGGCCAGCTTCCGATGAGAGATTGAGTGTATTACGAACCAACTCCGGATTCGGTTTAACATGCGAAAAGCTAAGTTGAAGACGCTGTGTAATGGGAAGAGGATCCGAATCAGGGTCTTTGAGAAGCTCAGATGCAAGTGATTGGGATGTTTGATCCACGTCATTGTTGACGGACTCGGAAGAGAACGAATGAGAAAGTGAGAGATACAAGGGAGAAGAAAACCTTAACGCCGCCTCATGATGTCGGAAATGGTGGAAGAGAGACGTCAAATTTCGATGTAAAAGAACCGTCCTAGCAGAATCTTTCAAGGAATTAGTAGAAGACGATGATAGAGATCGAAGAACTAAGGTTCGAAGTTGCAGATACGGTAATGGCGGCATGGTTGAGAGCTCTGAAAAATAAAAATGGAACTGAGCTC

mRNA sequence

CCTGACCTGATGGCTGTCTGAAGATATCATTCCACAATTGGTCAGTTTTTCCATGGATAAGCCTGTAGTAAAACAACCATAATCGGCAGGATGGTCGACAAGACACAGAGCCAGACATAGTCAAATTTCAACAAGAACACTGTGAGTCATCATCACCAAGCGATAACTGATTAAAGCAAAACCAGCTATATTTGTAGAAGTACTAGTAACTTCCATGTTCTAACTTCTCGGCGTCAGTTAAACCAAATATGAACAAGAAGTACCTTCATTTTACTCTATGTGGATAGATATTATGGCATTAACAACAATGCAACACTTTTTCAAGGTACATTTTCCTAAACCAACCTGGAATTTTGATCCACCAAAAGTTTGACCTTGTTCCTTTTGTCCAATATAATGGAATGACATGTCAGAGTTGCCATTTTCCTGTATCAGTTTCAGCTAAACACAACAGGGTAAAATCAAAAACCTCTTATTTCTCTGCTGCTAATATTATAAAGGGAAGGAGGGGCAGATGCAAAAGAATGGATAAACAAACGTCAATTCATATGCATTAAATTCTAGTGCTACATTATCAAAATGCTCTACGCATTCCTCTTCTCGGTTTCTTAACAAAACTCAATCGAATTTGCTTCAGTCGTCGCCTTTTTCTCGCCATTTTCTCTGGCAATGTCTCCCTCTTCTTTGCAACCTTCTTATCCTTTGGCTTCTTTACATATTTCGGATCCACCTGATATGCTTTTGGAGTAACTGGTACACCCCGTTTTTGAGCTTCGTTAAAGAGTGAATTCGCTTTGTCCAAACGATTGTGGGCACAAAGTTTTCCCATCAATAGATCATATGTTTTAATCCCAGGTTCACACCCATCCTTCTTCATCTTTGCAAATACAACCAGTGCATGATCAATTCTCTCAATCCCACACAAAATATTCATAAACTCATAATAGGCCTTCTTATCAAGTGCATCTCCATATCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCTCCCGTTCGTGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTAACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCGACATTTCGTGGAACCCCACGACAGTCCATTTCCACCAGAATTTCCTCAGCTTCAGAATCAAGTCTAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGCAAAGCATTATATGCCGTTGTCCCTAACTCGAACCCGCCCCTGTACATCTCACCCGCTAGCCTTTTAGCTTCATCAAGTTTCTCATTCACACACCATCCTTTGATCAGAGTATCGCATATTGCTTCATCAGGGAAAAATTCATTAGCCAAGTCTTTGACCATCTTTTCAGCATGGCTCCCGAACCCATTTTCACAAAGCTTCTCCACTACCATCCTAAGCGACTCTTTATCCCTCTTAAGCCCGTAATTCTTCTCCATCGTCTCAAAAAATGAGATCAACTTAGTGGGTCGCCCAGCACGAGCGAACCGATGAATAGACGACTTAAGGGTTTTAGGCCCATTGATCCCTAAACCTTTCGCAAGGACTTCCTGAACCGCATTGAAATCTTTTCTACGACCAAAGAAATCAACAAAATACGATATAGTTTCATCAGTGTGATGAAAATCAGGATTCGATACTAACCATTCATTAAACCCTAACACTGTACGGCCAGCTTCCGATGAGAGATTGAGTGTATTACGAACCAACTCCGGATTCGGTTTAACATGCGAAAAGCTAAGTTGAAGACGCTGTGTAATGGGAAGAGGATCCGAATCAGGGTCTTTGAGAAGCTCAGATGCAAGTGATTGGGATGTTTGATCCACGTCATTGTTGACGGACTCGGAAGAGAACGAATGAGAAAGTGAGAGATACAAGGGAGAAGAAAACCTTAACGCCGCCTCATGATGTCGGAAATGGTGGAAGAGAGACGTCAAATTTCGATGTAAAAGAACCGTCCTAGCAGAATCTTTCAAGGAATTAGTAGAAGACGATGATAGAGATCGAAGAACTAAGGTTCGAAGTTGCAGATACGGTAATGGCGGCATGGTTGAGAGCTCTGAAAAATAAAAATGGAACTGAGCTC

Coding sequence (CDS)

ATGATCAATTCTCTCAATCCCACACAAAATATTCATAAACTCATAATAGGCCTTCTTATCAAGTGCATCTCCATATCCGACAGACTTCATCCTGTCAATCATTTCATCCCCCTCTCCCGTTCGTGCCGCTTGATACAAACTTCTAATCAATATGAGGAACGTTTCAGCATTGGGATGACATCCCCATTCCCCCATTCGATGAAACAAATTAACTGCATCAGTAGTTCTCCTAATCTTGCACAAATTATTGATCAGCACATTGAAAGTTTCGACATTTCGTGGAACCCCACGACAGTCCATTTCCACCAGAATTTCCTCAGCTTCAGAATCAAGTCTAAACGGATCCTTTTTCCTACAAAGTTTGCAAACACAATCAAGCAAAGCATTATATGCCGTTGTCCCTAA

Protein sequence

MINSLNPTQNIHKLIIGLLIKCISISDRLHPVNHFIPLSRSCRLIQTSNQYEERFSIGMTSPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTVHFHQNFLSFRIKSKRILFPTKFANTIKQSIICRCP*
Homology
[Close]
BLAST of CSPI01G03380 vs. ExPASy TrEMBL
Match: A0A0A0LRY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015730 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.3e-69
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 0 

Query: 1   MINSLNPTQNIHKLIIGLLIKCISISDRLHPVNHFIPLSRSCRLIQTSNQYEERFSIGMT 60
           MINSLNPTQNIHKLII LLIKCISISDRLHPVNHFIPL RSCRLIQTSNQYEERFSIGMT
Sbjct: 1   MINSLNPTQNIHKLIISLLIKCISISDRLHPVNHFIPLPRSCRLIQTSNQYEERFSIGMT 60

Query: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTVHFHQNFLSFRIKSKRILFPTK 120
           SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTT+HFHQNFLSFRIKSKRILFPTK
Sbjct: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTIHFHQNFLSFRIKSKRILFPTK 120

Query: 121 FANTIKQSIICRCP 135
           FANTIKQSIIC CP
Sbjct: 121 FANTIKQSIICGCP 134

[Close]
BLAST of CSPI01G03380 vs. ExPASy TrEMBL
Match: A0A7J6GIX1 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_001224 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-22
Identity = 62/126 (49.21%), Postives = 79/126 (62.70%), Query Frame = 0 

Query: 1   MINSLNPTQNIHKLIIGLLIKCISISDRLHPVNHFIPLSRSCRLIQTSNQYEERFSIGMT 60
           MI+SLN TQN+ K +I LL+K  +IS RLH +NHFIP S S  L + S      F I +T
Sbjct: 165 MIDSLNSTQNLQKTVILLLVKQFTISCRLHSINHFIPFSNSRSLNKIS------FCIWIT 224

Query: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTVHFHQNFLSFRIKSKRILFPTK 120
           +P  HS+K    I S PNL QI+DQH E   +SW+   VH  ++  +  +K KRILFP  
Sbjct: 225 TPLAHSIKHFQGIFSFPNLTQIVDQHKECLSVSWSSIHVHIKKHLFNLGMKLKRILFPAY 284

Query: 121 FANTIK 127
           FANTIK
Sbjct: 285 FANTIK 284

[Close]
BLAST of CSPI01G03380 vs. NCBI nr
Match: KAF4382079.1 (hypothetical protein F8388_001224 [Cannabis sativa])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 62/126 (49.21%), Postives = 79/126 (62.70%), Query Frame = 0 

Query: 1   MINSLNPTQNIHKLIIGLLIKCISISDRLHPVNHFIPLSRSCRLIQTSNQYEERFSIGMT 60
           MI+SLN TQN+ K +I LL+K  +IS RLH +NHFIP S S  L + S      F I +T
Sbjct: 165 MIDSLNSTQNLQKTVILLLVKQFTISCRLHSINHFIPFSNSRSLNKIS------FCIWIT 224

Query: 61  SPFPHSMKQINCISSSPNLAQIIDQHIESFDISWNPTTVHFHQNFLSFRIKSKRILFPTK 120
           +P  HS+K    I S PNL QI+DQH E   +SW+   VH  ++  +  +K KRILFP  
Sbjct: 225 TPLAHSIKHFQGIFSFPNLTQIVDQHKECLSVSWSSIHVHIKKHLFNLGMKLKRILFPAY 284

Query: 121 FANTIK 127
           FANTIK
Sbjct: 285 FANTIK 284

The following BLAST results are available for this feature:
BLAST of CSPI01G03380 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G03380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRY15.3e-6997.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015730 PE=4 SV=1[more]
A0A7J6GIX14.9e-2249.21Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_001224 PE=4 SV=1[more]
BLAST of CSPI01G03380 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4382079.11.0e-2149.21hypothetical protein F8388_001224 [Cannabis sativa][more]
BLAST of CSPI01G03380 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G03380.1CSPI01G03380.1mRNA