CSPI01G03260 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G03260
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Dof zinc finger protein
Location	Chr1: 2057030 .. 2058053 (+)
RNA-Seq Expression	CSPI01G03260
Synteny	CSPI01G03260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTTACTCAAAAACCCATGATGGGTAAACTCTATAGGACATAGACAAGAGGGGTAATAGAGTAAATTGAGATGTATGCAAAATGAGGGATATATTGGTAAATTGATAATTTACTTGAAAAATATTAGACATATGAAGCTGTGCAGGGGATATTTGTCAGTGTTTAGAAGCTGAGATTCAGAGACTCTCACACACTTCCCCAAATTTCTTTATCATCATAAGCCCATCGAACACTCTCAAGAAAAACAAGAAATTTAAGGGAAAAAAAGAAGAAGAAGAAAGAGGGGAAATCGTTTTTGGGTTTTTTGTTTTCCCCCAAATGTGTGGTTCAGTTTTTCTCTAGAAAGTTTTTTCGATTTTGTTCCTTTCTGAAAATGCAAGACATACACTCGATCGCCGGAGGAAGTCGGTTGTTCGGCGGCGGGGGAGGCGGAGACCGTCGTTTACGGCCACATCTTCACCATCATCAAAACCACCAAGCTTTGAAGTGTCCAAGGTGTGATTCTCTTAATACCAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCATTTCTGCAAGAGTTGCCGTCGTTACTGGACCAAAGGTGGCGTCCTACGTAACGTCCCCGTCGGGGGTGGTTGCCGGAAAACCAAACGCTCTTCTTCTTCTAAATCTAAGTCTAACTCCTCCGACGCAGTGGCGACTCCTCCTCCACTACCTCCGCCTCCTCTTCCTCTTCCACTTCGTGATCGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCGAGTTTAACCGCAACAACTACGACCGCTGCGGCGGCGGCGGAGCTCTCCGACCACTTGATTTCTCATCGGTGCGTGTCGTCCGTCTTGAAAAAAGACGGACAGATCTTATCCATTGCCATGTTTAATGATATTTTGTACACTGGGTCTGACAGCAATTTAGTTAGGATTTGGAAGCTGCCGGACTTCACGGAGTGTGGGCAGCTTAAAACAAAGCTCCGTCGTCTAATTCGGCATCGGGTTTATTGA

mRNA sequence

AATTTTTACTCAAAAACCCATGATGGGTAAACTCTATAGGACATAGACAAGAGGGGTAATAGAGTAAATTGAGATGTATGCAAAATGAGGGATATATTGGTAAATTGATAATTTACTTGAAAAATATTAGACATATGAAGCTGTGCAGGGGATATTTGTCAGTGTTTAGAAGCTGAGATTCAGAGACTCTCACACACTTCCCCAAATTTCTTTATCATCATAAGCCCATCGAACACTCTCAAGAAAAACAAGAAATTTAAGGGAAAAAAAGAAGAAGAAGAAAGAGGGGAAATCGTTTTTGGGTTTTTTGTTTTCCCCCAAATGTGTGGTTCAGTTTTTCTCTAGAAAGTTTTTTCGATTTTGTTCCTTTCTGAAAATGCAAGACATACACTCGATCGCCGGAGGAAGTCGGTTGTTCGGCGGCGGGGGAGGCGGAGACCGTCGTTTACGGCCACATCTTCACCATCATCAAAACCACCAAGCTTTGAAGTGTCCAAGGTGTGATTCTCTTAATACCAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCATTTCTGCAAGAGTTGCCGTCGTTACTGGACCAAAGGTGGCGTCCTACGTAACGTCCCCGTCGGGGGTGGTTGCCGGAAAACCAAACGCTCTTCTTCTTCTAAATCTAAGTCTAACTCCTCCGACGCAGTGGCGACTCCTCCTCCACTACCTCCGCCTCCTCTTCCTCTTCCACTTCGTGATCGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCGAGTTTAACCGCAACAACTACGACCGCTGCGGCGGCGGCGGAGCTCTCCGACCACTTGATTTCTCATCGGTGCGTGTCGTCCGTCTTGAAAAAAGACGGACAGATCTTATCCATTGCCATGTTTAATGATATTTTGTACACTGGGTCTGACAGCAATTTAGTTAGGATTTGGAAGCTGCCGGACTTCACGGAGTGTGGGCAGCTTAAAACAAAGCTCCGTCGTCTAATTCGGCATCGGGTTTATTGA

Coding sequence (CDS)

ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGGTTGTTCGGCGGCGGGGGAGGCGGAGACCGTCGTTTACGGCCACATCTTCACCATCATCAAAACCACCAAGCTTTGAAGTGTCCAAGGTGTGATTCTCTTAATACCAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCATTTCTGCAAGAGTTGCCGTCGTTACTGGACCAAAGGTGGCGTCCTACGTAACGTCCCCGTCGGGGGTGGTTGCCGGAAAACCAAACGCTCTTCTTCTTCTAAATCTAAGTCTAACTCCTCCGACGCAGTGGCGACTCCTCCTCCACTACCTCCGCCTCCTCTTCCTCTTCCACTTCGTGATCGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCGAGTTTAACCGCAACAACTACGACCGCTGCGGCGGCGGCGGAGCTCTCCGACCACTTGATTTCTCATCGGTGCGTGTCGTCCGTCTTGAAAAAAGACGGACAGATCTTATCCATTGCCATGTTTAATGATATTTTGTACACTGGGTCTGACAGCAATTTAGTTAGGATTTGGAAGCTGCCGGACTTCACGGAGTGTGGGCAGCTTAAAACAAAGCTCCGTCGTCTAATTCGGCATCGGGTTTATTGA

Protein sequence

MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPLRDRKSTSHSSSESSSLTATTTTAAAAAELSDHLISHRCVSSVLKKDGQILSIAMFNDILYTGSDSNLVRIWKLPDFTECGQLKTKLRRLIRHRVY*

Homology

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BLAST of CSPI01G03260 vs. ExPASy Swiss-Prot
Match: Q8LDR0 (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 166.0 bits (419), Expect = 4.7e-40
Identity = 98/165 (59.39%), Postives = 115/165 (69.70%), Query Frame = 0


Query: 1   MQDIHSIA---------GGSRLF----GGGGGGDRRLRPHLHHHQN-HQALKCPRCDSLN 60
           MQDIH  +         GG R F    GGGGGGDRR+R H ++  N HQ+LKCPRC+SLN
Sbjct: 1   MQDIHDFSMNGVGGGGGGGGRFFGGGIGGGGGGDRRMRAHQNNILNHHQSLKCPRCNSLN 60

Query: 61  TKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVA 120
           TKFCYYNNYNLSQPRHFCK+CRRYWTKGGVLRNVPVGGGCRK KRS + +  S+SS   A
Sbjct: 61  TKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQVPSSSS---A 120

Query: 121 TPPPLPPPPLPLPLRDRKST-SHSSSESSSLTATTTTAAAAAELS 151
             P          + ++ ST SHSSSESSSLTA+ +T  AA  ++
Sbjct: 121 DKPTTTQD--DHHVEEKSSTGSHSSSESSSLTASNSTTVAAVSVT 160

[Close]

BLAST of CSPI01G03260 vs. ExPASy Swiss-Prot
Match: Q6Z345 (Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30
Identity = 80/155 (51.61%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 1   MQDIHSIAG-GSRLFGGGGGGDRRLRPHLHHHQNH-------QALKCPRCDSLNTKFCYY 60
           MQ+  SI G   RLFGG    D R         +        +A+KCPRC+S NTKFCYY
Sbjct: 1   MQEFQSIPGLAGRLFGGAAAADIRRAQAQQGPASRCGGIPSPEAVKCPRCESTNTKFCYY 60

Query: 61  NNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLP 120
           NNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS SS + S++       P  P
Sbjct: 61  NNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSGSSSAASSA-------PSTP 120

Query: 121 PPPLPLPLRDRKSTSHSSSESSSLTATTTTAAAAA 148
                     R++++ S   SS  +  T+  AAAA
Sbjct: 121 TAATDNAKNQRRASASSPRSSSGGSGNTSPTAAAA 148

[Close]

BLAST of CSPI01G03260 vs. ExPASy Swiss-Prot
Match: Q9ZV33 (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 4.1e-28
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 36  ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSS 95
           ALKCPRCDS NTKFCY+NNYNL+QPRHFCK+CRRYWT+GG LRNVPVGGGCR+ K+  S 
Sbjct: 93  ALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSG 152

Query: 96  KSKSNSS 103
            SKS+SS
Sbjct: 153 NSKSSSS 159

[Close]

BLAST of CSPI01G03260 vs. ExPASy Swiss-Prot
Match: Q9SXG8 (Dof zinc finger protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF1 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.4e-28
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 6   SIAGGSRLFGGGGGG-------------DRRLRPHLHHHQNHQALKCPRCDSLNTKFCYY 65
           S+ GG+ L GGGGGG             +RR RP     Q  +AL CPRC+S NTKFCYY
Sbjct: 40  SVTGGA-LRGGGGGGAPPVAGGAGAGSTERRARP-----QKEKALNCPRCNSTNTKFCYY 99

Query: 66  NNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDA 105
           NNY+L QPR+FCK+CRRYWT+GG LRNVPVGGG RK KRSSSS + ++ + A
Sbjct: 100 NNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSAASASPASA 145

[Close]

BLAST of CSPI01G03260 vs. ExPASy Swiss-Prot
Match: Q9FM03 (Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana OX=3702 GN=DOF5.6 PE=2 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 5.4e-28
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 20  GDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRN 79
           G RRLRP   H Q     KCPRC+S +TKFCYYNNY+LSQPR+FCK+CRRYWTKGG LRN
Sbjct: 61  GGRRLRPPHDHPQ-----KCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRN 120

Query: 80  VPVGGGCRKTKRSSSSKSKSNSS 103
           +PVGGGCRK K+ SSS S S++S
Sbjct: 121 IPVGGGCRKNKKPSSSNSSSSTS 138

[Close]

BLAST of CSPI01G03260 vs. ExPASy TrEMBL
Match: A0A0A0LSJ3 (Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G015610 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.2e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPL 120
           RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPL
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPL 120

Query: 121 RDRKSTSHSSSESSSLTATTTTAAAAA 148
           RDRKSTSHSSSESSSLTATTTTAAAAA
Sbjct: 121 RDRKSTSHSSSESSSLTATTTTAAAAA 147

[Close]

BLAST of CSPI01G03260 vs. ExPASy TrEMBL
Match: A0A5A7UTG5 (Dof zinc finger protein DOF5.4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003220 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.4e-73
Identity = 143/149 (95.97%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN-SSDAVATPPPLPPPPLPLP 120
           RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN SSDAVATPPP PPP LPLP
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSSDAVATPPPPPPPALPLP 120

Query: 121 LRDRKSTSHSSSESSSLTATTTTAAAAAE 149
            RDRKSTSHSSSESSSLTATTTTAA A E
Sbjct: 121 PRDRKSTSHSSSESSSLTATTTTAAVATE 149

[Close]

BLAST of CSPI01G03260 vs. ExPASy TrEMBL
Match: A0A1S3BVD8 (dof zinc finger protein DOF5.4 OS=Cucumis melo OX=3656 GN=LOC103494070 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.4e-73
Identity = 143/149 (95.97%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN-SSDAVATPPPLPPPPLPLP 120
           RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN SSDAVATPPP PPP LPLP
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSSDAVATPPPPPPPALPLP 120

Query: 121 LRDRKSTSHSSSESSSLTATTTTAAAAAE 149
            RDRKSTSHSSSESSSLTATTTTAA A E
Sbjct: 121 PRDRKSTSHSSSESSSLTATTTTAAVATE 149

[Close]

BLAST of CSPI01G03260 vs. ExPASy TrEMBL
Match: A0A5D3BEK2 (Dof zinc finger protein DOF5.4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold346G00120 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.8e-72
Identity = 142/149 (95.30%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN-SSDAVATPPPLPPPPLPLP 120
           RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN SSDAVATPPP PPP LPLP
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSSDAVATPPPPPPPALPLP 120

Query: 121 LRDRKSTSHSSSESSSLTATTTTAAAAAE 149
            RDRKSTSHSSSESSSLTATT TAA A E
Sbjct: 121 PRDRKSTSHSSSESSSLTATTYTAAVATE 149

[Close]

BLAST of CSPI01G03260 vs. ExPASy TrEMBL
Match: A0A6J1E400 (dof zinc finger protein DOF5.4-like OS=Cucurbita moschata OX=3662 GN=LOC111429734 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.2e-64
Identity = 133/147 (90.48%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLF  GGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLF--GGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPL 120
           RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKS + D  AT PP PPPP    L
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKS-TPDVAATSPPSPPPP---RL 120

Query: 121 RDRKSTSHSSSESSSLTATTTTAAAAA 148
           R+RKSTSHSSSESSSLTATTTTAAAAA
Sbjct: 121 RERKSTSHSSSESSSLTATTTTAAAAA 141

[Close]

BLAST of CSPI01G03260 vs. NCBI nr
Match: XP_011648588.1 (dof zinc finger protein DOF5.4 [Cucumis sativus] >KGN63767.1 hypothetical protein Csa_013727 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 4.6e-77
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPL 120
           RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPL
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPL 120

Query: 121 RDRKSTSHSSSESSSLTATTTTAAAAA 148
           RDRKSTSHSSSESSSLTATTTTAAAAA
Sbjct: 121 RDRKSTSHSSSESSSLTATTTTAAAAA 147

[Close]

BLAST of CSPI01G03260 vs. NCBI nr
Match: XP_008453317.1 (PREDICTED: dof zinc finger protein DOF5.4 [Cucumis melo] >KAA0058017.1 dof zinc finger protein DOF5.4 [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 9.0e-73
Identity = 143/149 (95.97%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN-SSDAVATPPPLPPPPLPLP 120
           RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN SSDAVATPPP PPP LPLP
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSSDAVATPPPPPPPALPLP 120

Query: 121 LRDRKSTSHSSSESSSLTATTTTAAAAAE 149
            RDRKSTSHSSSESSSLTATTTTAA A E
Sbjct: 121 PRDRKSTSHSSSESSSLTATTTTAAVATE 149

[Close]

BLAST of CSPI01G03260 vs. NCBI nr
Match: TYJ98240.1 (dof zinc finger protein DOF5.4 [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 5.8e-72
Identity = 142/149 (95.30%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN-SSDAVATPPPLPPPPLPLP 120
           RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN SSDAVATPPP PPP LPLP
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSSDAVATPPPPPPPALPLP 120

Query: 121 LRDRKSTSHSSSESSSLTATTTTAAAAAE 149
            RDRKSTSHSSSESSSLTATT TAA A E
Sbjct: 121 PRDRKSTSHSSSESSSLTATTYTAAVATE 149

[Close]

BLAST of CSPI01G03260 vs. NCBI nr
Match: XP_038879969.1 (dof zinc finger protein DOF5.4, partial [Benincasa hispida])

HSP 1 Score: 262.7 bits (670), Expect = 2.8e-66
Identity = 134/147 (91.16%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLFGG GGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 21  MQDIHSIAGGSRLFGGAGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 80

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPL 120
           RHFCK+CRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN SDA ATPP       P PL
Sbjct: 81  RHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSN-SDAAATPP-------PPPL 140

Query: 121 RDRKSTSHSSSESSSLTATTTTAAAAA 148
           R+RKSTSHSSSESSSLTATTTTAAAAA
Sbjct: 141 RERKSTSHSSSESSSLTATTTTAAAAA 159

[Close]

BLAST of CSPI01G03260 vs. NCBI nr
Match: XP_023516104.1 (dof zinc finger protein DOF5.4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 2.4e-65
Identity = 135/147 (91.84%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60
           MQDIHSIAGGSRLF  GGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP
Sbjct: 1   MQDIHSIAGGSRLF--GGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQP 60

Query: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVATPPPLPPPPLPLPL 120
           RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKS S D  AT PP PPPP   PL
Sbjct: 61  RHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKS-SPDVAATSPPPPPPP---PL 120

Query: 121 RDRKSTSHSSSESSSLTATTTTAAAAA 148
           R+RKSTSHSSSESSSLTATTTTAAAAA
Sbjct: 121 RERKSTSHSSSESSSLTATTTTAAAAA 141

[Close]

BLAST of CSPI01G03260 vs. TAIR 10
Match: AT5G60850.1 (OBF binding protein 4 )

HSP 1 Score: 166.0 bits (419), Expect = 3.3e-41
Identity = 98/165 (59.39%), Postives = 115/165 (69.70%), Query Frame = 0


Query: 1   MQDIHSIA---------GGSRLF----GGGGGGDRRLRPHLHHHQN-HQALKCPRCDSLN 60
           MQDIH  +         GG R F    GGGGGGDRR+R H ++  N HQ+LKCPRC+SLN
Sbjct: 1   MQDIHDFSMNGVGGGGGGGGRFFGGGIGGGGGGDRRMRAHQNNILNHHQSLKCPRCNSLN 60

Query: 61  TKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSDAVA 120
           TKFCYYNNYNLSQPRHFCK+CRRYWTKGGVLRNVPVGGGCRK KRS + +  S+SS   A
Sbjct: 61  TKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSKTKQVPSSSS---A 120

Query: 121 TPPPLPPPPLPLPLRDRKST-SHSSSESSSLTATTTTAAAAAELS 151
             P          + ++ ST SHSSSESSSLTA+ +T  AA  ++
Sbjct: 121 DKPTTTQD--DHHVEEKSSTGSHSSSESSSLTASNSTTVAAVSVT 160

[Close]

BLAST of CSPI01G03260 vs. TAIR 10
Match: AT2G28810.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-29
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 36  ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSS 95
           ALKCPRCDS NTKFCY+NNYNL+QPRHFCK+CRRYWT+GG LRNVPVGGGCR+ K+  S 
Sbjct: 93  ALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSG 152

Query: 96  KSKSNSS 103
            SKS+SS
Sbjct: 153 NSKSSSS 159

[Close]

BLAST of CSPI01G03260 vs. TAIR 10
Match: AT2G28810.2 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-29
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 36  ALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSS 95
           ALKCPRCDS NTKFCY+NNYNL+QPRHFCK+CRRYWT+GG LRNVPVGGGCR+ K+  S 
Sbjct: 76  ALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSG 135

Query: 96  KSKSNSS 103
            SKS+SS
Sbjct: 136 NSKSSSS 142

[Close]

BLAST of CSPI01G03260 vs. TAIR 10
Match: AT5G62940.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-29
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 20  GDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRN 79
           G RRLRP   H Q     KCPRC+S +TKFCYYNNY+LSQPR+FCK+CRRYWTKGG LRN
Sbjct: 61  GGRRLRPPHDHPQ-----KCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRN 120

Query: 80  VPVGGGCRKTKRSSSSKSKSNSS 103
           +PVGGGCRK K+ SSS S S++S
Sbjct: 121 IPVGGGCRKNKKPSSSNSSSSTS 138

[Close]

BLAST of CSPI01G03260 vs. TAIR 10
Match: AT1G64620.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 125.2 bits (313), Expect = 6.5e-29
Identity = 62/103 (60.19%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 21  DRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNV 80
           +R+ RP     +  QAL CPRC+SLNTKFCYYNNY+L+QPR+FCK CRRYWT GG LRN+
Sbjct: 38  ERKARP-----EKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNI 97

Query: 81  PVGGGCRKTKRSSSSKSKSNSSDAVATPPPL------PPPPLP 118
           PVGGG RK KRSSS+ S S+ S + ++  PL      P PPLP
Sbjct: 98  PVGGGVRKNKRSSSNSSSSSPSSSSSSKKPLFANNNTPTPPLP 135

The following BLAST results are available for this feature:

BLAST of CSPI01G03260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDR0	4.7e-40	59.39	Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV...	[more]
Q6Z345	1.2e-30	51.61	Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 ...	[more]
Q9ZV33	4.1e-28	79.10	Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV...	[more]
Q9SXG8	5.4e-28	58.04	Dof zinc finger protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF1 PE=2 ...	[more]
Q9FM03	5.4e-28	69.88	Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana OX=3702 GN=DOF5.6 PE=2 SV...	[more]

BLAST of CSPI01G03260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSJ3	2.2e-77	100.00	Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G015610 PE...	[more]
A0A5A7UTG5	4.4e-73	95.97	Dof zinc finger protein DOF5.4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BVD8	4.4e-73	95.97	dof zinc finger protein DOF5.4 OS=Cucumis melo OX=3656 GN=LOC103494070 PE=4 SV=1	[more]
A0A5D3BEK2	2.8e-72	95.30	Dof zinc finger protein DOF5.4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1E400	2.2e-64	90.48	dof zinc finger protein DOF5.4-like OS=Cucurbita moschata OX=3662 GN=LOC11142973...	[more]

BLAST of CSPI01G03260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648588.1	4.6e-77	100.00	dof zinc finger protein DOF5.4 [Cucumis sativus] >KGN63767.1 hypothetical protei...	[more]
XP_008453317.1	9.0e-73	95.97	PREDICTED: dof zinc finger protein DOF5.4 [Cucumis melo] >KAA0058017.1 dof zinc ...	[more]
TYJ98240.1	5.8e-72	95.30	dof zinc finger protein DOF5.4 [Cucumis melo var. makuwa]	[more]
XP_038879969.1	2.8e-66	91.16	dof zinc finger protein DOF5.4, partial [Benincasa hispida]	[more]
XP_023516104.1	2.4e-65	91.84	dof zinc finger protein DOF5.4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI01G03260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60850.1	3.3e-41	59.39	OBF binding protein 4	[more]
AT2G28810.1	2.9e-29	79.10	Dof-type zinc finger DNA-binding family protein	[more]
AT2G28810.2	2.9e-29	79.10	Dof-type zinc finger DNA-binding family protein	[more]
AT5G62940.1	3.8e-29	69.88	Dof-type zinc finger DNA-binding family protein	[more]
AT1G64620.1	6.5e-29	60.19	Dof-type zinc finger DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 35..91 e-value: 2.1E-33 score: 114.2
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 39..75
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 37..91 score: 29.618071
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR31992	DOF ZINC FINGER PROTEIN DOF1.4-RELATED	coord: 15..146
None	No IPR available	PANTHER	PTHR31992:SF205	DOF ZINC FINGER PROTEIN 4	coord: 15..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G03260.1	CSPI01G03260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding