CSPI01G02900 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G02900
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glycine-rich RNA-binding protein 2
Location	Chr1: 1829587 .. 1832877 (-)
RNA-Seq Expression	CSPI01G02900
Synteny	CSPI01G02900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCTTCATTTCTCTCTTTCGGCATAAACCACCCGACTGATCAGTGAAGCTTCTAGGGTTTTTGCATCGCGAGCAAGTTGACGAAGAACAAGAGCAAGAACAAGGTTTGATCTATACTCACTTCATCATTTCTGTATGTTTTCTTTTCTTGATCGTTATCTTGTTGTTTGTTTATGCTTTTCCGGTTGTATTTCTTGTATAATCGTTGAAAAATTTTCGCACTAGAACACTCGATGGATGTGTTCTTGCTGTTCTTCAAGTTTTTCCCACTGGGTTTCAGGGTTTAGGAACTGGATGAAATGATAGAAGCGAATAGGCGATGAGTCTTTTTCTATCTCACCTTTTACGTATTCGAACTCTTCGTCACGGGCTGTTTTTTCATTTCTTGTGTTTGGGTCTTGTTTTGGAATATTGGGTTTCGTTTCTTACGATATATAAGTTTGTCTTGGTGGTGTGGAATACGGATCACCTTGTTGTGATTGAAATGTTATTATTAACCACCAAAACAGAGCTTATGCACGTTGGCGTTTATAGGGATAGGTGTGGACGTTCTTACGTACACATGTACCGTATTTCATTCATTTTCAGTGTTTGTTTTCTTAGACTCTCTTGTTTAGTCGGATTTGGTACGTTGTTGCAATGAGTTTGTTAGGAAATGTGTTGCGACAGTGTTTATGTGTGTATTTTAATTTGTTGAAAATAGAAGTTGAATGTAATTTAATTTGAGGCTGACTGGAAACTTTAATTTTTGCCTTTGAATTGTTGGTTAATTATTCGCCACTTATTTCTTTCAGGTTGCTTCAAAATGGCTTTTTTAAGTAAGTTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGATTGGATTAGATTTGCACCGTTCCAGTTTGTCTCTCTCTCAAGCTGTACGATGGATGTCTTCCATGGAAAGTTCAAAAGTTTTTGTCGGAGGTTCTCTGAGAATACTTTGTTATTGTTCTTATATTTTTTTCTTTGAAGAACGCGTATATGTCAACTTATTTGTCCTTGTCTTGATTCTTGTGCTTGTATCTACGTTTGCCAGGTATTTCGTTCAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTACCAAATATGGGGAAGTAATCGAAGGTATATCCCCCAACTCATTTACAACTAGTGGCGAAGGTTATCTTTGAAGTATACGTTACGTAAATGCGATATGGAATAACAAACTTTGGAACCTGTATAGTCAGATCTGCTCCAAGAATTATGTCTCTTTTAGTGTTAAATATTAAATATTTTCTGTTATAAGGCTGAGCCAGTGGCTCGGGGGTGTAGCTGGACACTGCTTGTTTAGCTAGTGGATTGTGTCAAGTCTGTATTTTTCCATGAACGTTGCTTTCCTTGTTTACCCTCCTTTTCTTTGCCACCATGATAGCTAGGGTCATTGTAGACCGTGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGTAATGATTCTGCAGTCGAGACATTGAGATTGAAAAGGATAAAACGTAGTGTTATATTCATATGCTGCAATATATTGTGGAATTAATGCATCACCGCTCATATAATGCTTAATGGAAGTTGTCGGCATTCTTATAGACTGAGTTACTTTTATGAAGATGACTGTATCTAGTTAATGTATTTATGTTAATTGATCTTGTGTGAATGTCTTCATGCAATACCTTGAATGCTACATTTTCTGTAGCAAAAATTAGTGTGACGTAGCGATATTGAGAGCTTTAAGGTGTGGAAATATAGCAGGCCATTCTTTGTATTGTGCTCAAAAGTTAATTTTTGTTATAATGTGAAGTGTTTTAGGAACTGTCCTGTGTTATAAATGGTGCGTTGTATAATGGAGGCTTTCCTTGATACTTATATTCTCAAATAGCTGGTAATGTTAGCATACAAAATTGCCATTTAGATATTTGTATGGAATTTGGAGACTTGTTCCACTTTCGAATCTACGAGAACAAATCATATTAAACCGACTGACTAATTAACCAGATTCATTCTTTTTGTTAATTTAATTTAGTCCTCTAGATTTGCTAAACAGTAGATTTAATGGCTCAAGTTAATAATATTTCTGTTCCTTATACAACAGGACCTTCATGGTCGCCGAGTGAGAGTGAATTATGCTAATGATAGAGCTCGTGGTGGTGGCGGTGGTTATGGCGGTGGCGGTTATGGTGGCGGCGGTTATGGTGGTGGTGGAGGTTATGGTGGTGGTGGAGGTTATGGTGGTGGTGGGGGTTATGGAGCTGGTGGCGGGGGGGCTTATGGAGGTGGTGGCTATAGTGGTGGTGGTGCTGGAGGTTATGGTGGATATTCTGGAACGGGTGGGGGCAATTATGGCGGAGGAAGTGGAGGAAATTTTAGTAATGATTATGCCAGTGACAACCGTGGAAGTGTTGGTGGCTTTGGTGGTAATGATGCTGGCTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATTCGGTAGTGAAAGTAATGCAGGTTATGGTAGCAGTGACTATTTTGCCAAGAGCGAGGGGGAACAATTTGGCAGCAATGAAACAAACACCATGAAGGCATCTGGAGAGGATCATTTTGAAGAAAATGCTAGGGATGAAGACGATTCAAACGACTTTGCTAAAAGAGCCTGATAGATTTTTCCATATGTGCTATCCTCCATAGTTATAACTTCATCCAGCATTTTTGGTTATGGCCATGTCCATGTAGATTTTCCCTACATTCTCTACCGTACTGGAACCCTCTGACTTTGTTTCATATGTTCGAGACTTGCTTCGATGATTGTGAATTTTCAATTGAACTTCCAATCTAGTTTCTTCTCAATGATAAATAAGTAGTGTTTTTTTTTTGTCTGTCCTCTATTAGGAGGGTGGGTACCATCTTCTCGATTATGGTCGGTGGGCACCCCAGTGTTGTTTGCAGCCATACTACATTGCACTCGTTTTTGTCCATTATGATATCCCATAACTCCATAAAAAGTATTTTATGGTGTTGGTGTCGTTTGGTTGTGTTTTGAAGTAAAGTGTCAATGGGTTGGACTTAAGTGGTTTGTGATTAAGTTGAGTTAAAATTCTTTGGTGCAAAGGAGAAGTTTATGATTAGGGTTCAAAAAAGTTGAGTTGACATTACTGGGTGCACAACAGTGAAATGTGTTGAAGTTGGTAGGCCAAATAGCTTCAATATTTTATCACTGCATAAATCTATTAGACTTGGG

mRNA sequence

ATTCTCTTCATTTCTCTCTTTCGGCATAAACCACCCGACTGATCAGTGAAGCTTCTAGGGTTTTTGCATCGCGAGCAAGTTGACGAAGAACAAGAGCAAGAACAAGGTTGCTTCAAAATGGCTTTTTTAAGTAAGTTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGATTGGATTAGATTTGCACCGTTCCAGTTTGTCTCTCTCTCAAGCTGTACGATGGATGTCTTCCATGGAAAGTTCAAAAGTTTTTGTCGGAGGTATTTCGTTCAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTACCAAATATGGGGAAGTAATCGAAGCTAGGGTCATTGTAGACCGTGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGGTCGCCGAGTGAGAGTGAATTATGCTAATGATAGAGCTCGTGGTGGTGGCGGTGGTTATGGCGGTGGCGGTTATGGTGGCGGCGGTTATGGTGGTGGTGGAGGTTATGGTGGTGGTGGAGGTTATGGTGGTGGTGGGGGTTATGGAGCTGGTGGCGGGGGGGCTTATGGAGGTGGTGGCTATAGTGGTGGTGGTGCTGGAGGTTATGGTGGATATTCTGGAACGGGTGGGGGCAATTATGGCGGAGGAAGTGGAGGAAATTTTAGTAATGATTATGCCAGTGACAACCGTGGAAGTGTTGGTGGCTTTGGTGGTAATGATGCTGGCTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATTCGGTAGTGAAAGTAATGCAGGTTATGGTAGCAGTGACTATTTTGCCAAGAGCGAGGGGGAACAATTTGGCAGCAATGAAACAAACACCATGAAGGCATCTGGAGAGGATCATTTTGAAGAAAATGCTAGGGATGAAGACGATTCAAACGACTTTGCTAAAAGAGCCTGATAGATTTTTCCATATGTGCTATCCTCCATAGTTATAACTTCATCCAGCATTTTTGGTTATGGCCATGTCCATGTAGATTTTCCCTACATTCTCTACCGTACTGGAACCCTCTGACTTTGTTTCATATGTTCGAGACTTGCTTCGATGATTGTGAATTTTCAATTGAACTTCCAATCTAGTTTCTTCTCAATGATAAATAAGTAGTGTTTTTTTTTTGTCTGTCCTCTATTAGGAGGGTGGGTACCATCTTCTCGATTATGGTCGGTGGGCACCCCAGTGTTGTTTGCAGCCATACTACATTGCACTCGTTTTTGTCCATTATGATATCCCATAACTCCATAAAAAGTATTTTATGGTGTTGGTGTCGTTTGGTTGTGTTTTGAAGTAAAGTGTCAATGGGTTGGACTTAAGTGGTTTGTGATTAAGTTGAGTTAAAATTCTTTGGTGCAAAGGAGAAGTTTATGATTAGGGTTCAAAAAAGTTGAGTTGACATTACTGGGTGCACAACAGTGAAATGTGTTGAAGTTGGTAGGCCAAATAGCTTCAATATTTTATCACTGCATAAATCTATTAGACTTGGG

Coding sequence (CDS)

ATGGCTTTTTTAAGTAAGTTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGATTGGATTAGATTTGCACCGTTCCAGTTTGTCTCTCTCTCAAGCTGTACGATGGATGTCTTCCATGGAAAGTTCAAAAGTTTTTGTCGGAGGTATTTCGTTCAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTACCAAATATGGGGAAGTAATCGAAGCTAGGGTCATTGTAGACCGTGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGGTCGCCGAGTGAGAGTGAATTATGCTAATGATAGAGCTCGTGGTGGTGGCGGTGGTTATGGCGGTGGCGGTTATGGTGGCGGCGGTTATGGTGGTGGTGGAGGTTATGGTGGTGGTGGAGGTTATGGTGGTGGTGGGGGTTATGGAGCTGGTGGCGGGGGGGCTTATGGAGGTGGTGGCTATAGTGGTGGTGGTGCTGGAGGTTATGGTGGATATTCTGGAACGGGTGGGGGCAATTATGGCGGAGGAAGTGGAGGAAATTTTAGTAATGATTATGCCAGTGACAACCGTGGAAGTGTTGGTGGCTTTGGTGGTAATGATGCTGGCTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATTCGGTAGTGAAAGTAATGCAGGTTATGGTAGCAGTGACTATTTTGCCAAGAGCGAGGGGGAACAATTTGGCAGCAATGAAACAAACACCATGAAGGCATCTGGAGAGGATCATTTTGAAGAAAATGCTAGGGATGAAGACGATTCAAACGACTTTGCTAAAAGAGCCTGA

Protein sequence

MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYANDRARGGGGGYGGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGAGGYGGYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSESNAGYGSSDYFAKSEGEQFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA*

Homology

[Close]

BLAST of CSPI01G02900 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.4e-45
Identity = 170/303 (56.11%), Postives = 198/303 (65.35%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSKFGNIL+Q  NK++   +  SS SL QA+R MS   SSK+F+GG+++S D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 DRARG---GGGGY--GGGGYGG-GGYGGG-GGYGGGGGYGGG-GGYGAGGGGAYGG---G 180
           DR  G   GGGGY  GGGGYGG GGYGGG GGYGG GGYGGG GGYG   GG YGG   G
Sbjct: 121 DRTSGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAG 180

Query: 181 GYSGGGAGGYG----GYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASN 240
           GY G GAGGYG    G+ G GGG    G  G+  N Y   +  S G  G     YN +S 
Sbjct: 181 GYGGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAVG----DYNGSSG 240

Query: 241 FATGNTFGSESNAGYGSSDYFAKS---EGEQFGSNETNTM---KASGEDHFEENARDEDD 283
           + + NT+GS SN G+     F  S      QFG + T      +  GED F    + E  
Sbjct: 241 YGSANTYGS-SNGGFAGDSQFGGSPVGNSSQFGGDNTQFTAGGQFGGEDQFGSMEKSETK 295

[Close]

BLAST of CSPI01G02900 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27
Identity = 156/307 (50.81%), Postives = 188/307 (61.24%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSK G +  Q ++         +S S+ Q++R MS   SSK+FVGGIS+STD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSH------VTASSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 121 DRARG-GGGGYG--GGGYGG--GGYGG-GGGYGGG-GGYGGGGGY--GAGGGGAYGGGGY 180
           +R  G GG G+G  GGGYG   GGYG   GGYGGG GGYGG   Y   AGGGG YGG   
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSS 180

Query: 181 SGGGAGGYGG---YSGTGGGNYGGGSGGNFSNDYASDNRGSVGGF------GGNDAGYN- 240
            GG AGGYGG   YSG   G  GGG G NF         G VGG          +AG++ 
Sbjct: 181 YGGNAGGYGGNPPYSGNAVGG-GGGYGSNFGGGGGYGVAGGVGGSENFAQGSSTNAGFDD 240

Query: 241 -AASNFATGNTFGSESNAGYGSSDYFAKSEGEQFGSNETNTMKASGEDHFEENARDEDDS 288
              SN   GN    ++ +G G  + F  S+  QFG  E N    +G   F     D+ D 
Sbjct: 241 KFESNQPLGNDTDHQTESGLGGDEQFGGSD-NQFGDAE-NGNTENGPVGF-----DQTDD 289

[Close]

BLAST of CSPI01G02900 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-20
Identity = 95/157 (60.51%), Postives = 115/157 (73.25%), Query Frame = 0


Query: 44  KVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + FVGG+ ++TDDQSL+ AF+KYG+VI++++I DRETGRSRGFGFVT+ S E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 104 LDGQDLHGRRVRVNYANDRARGGGGGYGGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGG 163
           ++GQDL GR + VN A  R   GGGG+GG   GGGGYGG    GGGGGYGGGGG G GGG
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGG---GGGGYGGQRREGGGGGYGGGGG-GYGGG 126

Query: 164 GAYGGGGYSG--GGAGGYGGYSGTGGGNYGGGSGGNF 199
            + GGGGY    GG GGYGG  G  GG+ GG  GGN+
Sbjct: 127 RSGGGGGYGSRDGGGGGYGGGGGGYGGSRGGSGGGNW 159

[Close]

BLAST of CSPI01G02900 vs. ExPASy Swiss-Prot
Match: P10979 (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-19
Identity = 88/156 (56.41%), Postives = 108/156 (69.23%), Query Frame = 0


Query: 44  KVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + FVGG++++T ++SL  AF  YGE+++++VI DRETGRSRGFGFVT++S      AI+ 
Sbjct: 9   RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68

Query: 104 LDGQDLHGRRVRVNYANDRARGGGGGYGGGGYGGGGYGGG---GGYGGGGGYGGGGGYGA 163
           ++G++L GR + VN A  R  GGGGG  GGG GGGGYGGG   GGYGGGGGY   GG   
Sbjct: 69  MNGKELDGRNITVNQAQSRGGGGGGGGYGGGRGGGGYGGGRRDGGYGGGGGY---GGRRE 128

Query: 164 GGGGAYGGGGYSGGGAGGYGGYSGTGGGNYGGGSGG 197
           GGGG YGGG       GGYGG    GGG YGGG GG
Sbjct: 129 GGGGGYGGG-------GGYGGRREGGGGGYGGGGGG 154

[Close]

BLAST of CSPI01G02900 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-18
Identity = 98/176 (55.68%), Postives = 120/176 (68.18%), Query Frame = 0


Query: 44  KVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + FVGG++++TDD++L  AF +YG+VI++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 104 LDGQDLHGRRVRVNYANDRARGGGGGYGGGGYGGGGYGGGGGY-GGGGGYGGGGGYGAGG 163
           ++GQDL GR + VN A  R  GGGGG+ GGG GG   GGGGGY GGGG YGGGGG   GG
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGGGGGRREGG 128

Query: 164 GG-AYGGGGYS--GGGAGGYGGYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGG 216
           GG + GGGGYS  GGG G YGG    GGG YGGG GG +         G  GG GG
Sbjct: 129 GGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGY---------GGSGGGGG 175

[Close]

BLAST of CSPI01G02900 vs. ExPASy TrEMBL
Match: A0A0A0LPA9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G013770 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.7e-126
Identity = 279/287 (97.21%), Postives = 280/287 (97.56%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR
Sbjct: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRARGGGGGYGGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGAGGYG 180
           DRARGGGGGYGGGGY      GGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGAGGYG
Sbjct: 121 DRARGGGGGYGGGGY------GGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGAGGYG 180

Query: 181 GYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSESNAGY 240
           GYSG GGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSESNAG+
Sbjct: 181 GYSGMGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSESNAGF 240

Query: 241 GSSDYFAKSEGEQFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA 288
           GSSDYFAKSEGEQFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA
Sbjct: 241 GSSDYFAKSEGEQFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA 281

[Close]

BLAST of CSPI01G02900 vs. ExPASy TrEMBL
Match: A0A5A7UWK3 (Glycine-rich RNA-binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002990 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.7e-104
Identity = 254/296 (85.81%), Postives = 263/296 (88.85%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSKFGNILRQGANKR+GLDLHRSSLSL QAVRWMSSMESSKVFVGGISFSTDDQSLR
Sbjct: 1   MAFLSKFGNILRQGANKRVGLDLHRSSLSLCQAVRWMSSMESSKVFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 D---RARGGGGGY--GGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGG 180
           D   R  GGGGGY  GGGGYGGGGYGGGGGYG GGGYG GGGYG GGGGAYGGGGYSGGG
Sbjct: 121 DNRPRGFGGGGGYGGGGGGYGGGGYGGGGGYGAGGGYGAGGGYG-GGGGAYGGGGYSGGG 180

Query: 181 AGGYGGYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSE 240
           A          GGNYG GSGGN+SNDYASDNRGSVGGFGGNDAGYNAASNFA+GNTFGSE
Sbjct: 181 A----------GGNYGRGSGGNYSNDYASDNRGSVGGFGGNDAGYNAASNFASGNTFGSE 240

Query: 241 SNAGYGS---SDYFAKSEGE-QFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA 288
           SNAG+GS    DYFA   GE QFGSNETN+M ASGE+ FEENARD DD++DFAKRA
Sbjct: 241 SNAGFGSGSGGDYFANGSGEGQFGSNETNSMNASGEEQFEENARDGDDTDDFAKRA 285

[Close]

BLAST of CSPI01G02900 vs. ExPASy TrEMBL
Match: A0A1S3BVW4 (glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103494047 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.7e-104
Identity = 254/296 (85.81%), Postives = 263/296 (88.85%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSKFGNILRQGANKR+GLDLHRSSLSL QAVRWMSSMESSKVFVGGISFSTDDQSLR
Sbjct: 1   MAFLSKFGNILRQGANKRVGLDLHRSSLSLCQAVRWMSSMESSKVFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 D---RARGGGGGY--GGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGG 180
           D   R  GGGGGY  GGGGYGGGGYGGGGGYG GGGYG GGGYG GGGGAYGGGGYSGGG
Sbjct: 121 DNRPRGFGGGGGYGGGGGGYGGGGYGGGGGYGAGGGYGAGGGYG-GGGGAYGGGGYSGGG 180

Query: 181 AGGYGGYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSE 240
           A          GGNYG GSGGN+SNDYASDNRGSVGGFGGNDAGYNAASNFA+GNTFGSE
Sbjct: 181 A----------GGNYGRGSGGNYSNDYASDNRGSVGGFGGNDAGYNAASNFASGNTFGSE 240

Query: 241 SNAGYGS---SDYFAKSEGE-QFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA 288
           SNAG+GS    DYFA   GE QFGSNETN+M ASGE+ FEENARD DD++DFAKRA
Sbjct: 241 SNAGFGSGSGGDYFANGSGEGQFGSNETNSMNASGEEQFEENARDGDDTDDFAKRA 285

[Close]

BLAST of CSPI01G02900 vs. ExPASy TrEMBL
Match: A0A6J1E1P2 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111430026 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 225/318 (70.75%), Postives = 250/318 (78.62%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSK GNILRQGANKR GL+    SLS+ QAVRWMSSM+SSKVF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRARG-GGGGY--GGGGYGGGGY-GGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGA 180
           DR+RG GGGGY  GGGGYGGGGY GGGGGYGGGGG  GGG YG GGGG+YGGG Y GGG+
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYG-GGGGSYGGGSYGGGGS 180

Query: 181 GGYGGYSGTGGGNYGGG--SGGNFSNDYASDNRGSVG--GFGGNDAGYNAASNFATGNTF 240
           GG GGY G  GG +G G  +G N+S+ + S ++GS G  G GGNDAG NAASNFA+GNTF
Sbjct: 181 GG-GGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTF 240

Query: 241 GSESNAGY------GSSDYFAKS------------EGEQFGSNETNTMKASGE----DHF 288
           GS ++AG+      G  DYFA S             G+QFGSNE NT+ ASG+    +  
Sbjct: 241 GSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQL 300

[Close]

BLAST of CSPI01G02900 vs. ExPASy TrEMBL
Match: A0A6J1I7Z2 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74
Identity = 223/321 (69.47%), Postives = 246/321 (76.64%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSK GNILRQGANK+IG DL  SSLS+ QAVRWMSSM+SSK+FVGGISFSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRARG-GGGGYGGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGAGGY 180
           DR+RG GGGGYG    GGGGYGGGGGYGGGGGY GGGGYG GG G  G GGY GGG+GGY
Sbjct: 121 DRSRGVGGGGYG----GGGGYGGGGGYGGGGGY-GGGGYGGGGYGGGGPGGYGGGGSGGY 180

Query: 181 ----GGYSGTG---GGNY----GGGS---GGNFSNDYASDNRGSV---GGFGGNDAGYNA 240
               GG+S TG   GGNY    GGGS   GGN+ N++ASD+RGSV   GGFGGNDAGYN 
Sbjct: 181 GDGSGGFSTTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDAGYN- 240

Query: 241 ASNFATGNTFGSESNAGYGSSDYFAK------------SEGEQFGSNETNTMKASGE--- 288
           ASNF+ G++     N   G  DYF+             + G+QF S ET++M A G    
Sbjct: 241 ASNFSGGDS--GNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAPGSGLG 300

[Close]

BLAST of CSPI01G02900 vs. NCBI nr
Match: XP_011648448.2 (glycine-rich RNA-binding protein blt801 [Cucumis sativus] >KAE8652435.1 hypothetical protein Csa_013177 [Cucumis sativus])

HSP 1 Score: 473.0 bits (1216), Expect = 1.8e-129
Identity = 285/287 (99.30%), Postives = 286/287 (99.65%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR
Sbjct: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRARGGGGGYGGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGAGGYG 180
           DRARGGGGGYGGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGAGGYG
Sbjct: 121 DRARGGGGGYGGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGAGGYG 180

Query: 181 GYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSESNAGY 240
           GYSG GGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSESNAG+
Sbjct: 181 GYSGMGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSESNAGF 240

Query: 241 GSSDYFAKSEGEQFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA 288
           GSSDYFAKSEGEQFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA
Sbjct: 241 GSSDYFAKSEGEQFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA 287

[Close]

BLAST of CSPI01G02900 vs. NCBI nr
Match: XP_008453280.1 (PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Cucumis melo] >KAA0057995.1 glycine-rich RNA-binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 389.0 bits (998), Expect = 3.5e-104
Identity = 254/296 (85.81%), Postives = 263/296 (88.85%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSKFGNILRQGANKR+GLDLHRSSLSL QAVRWMSSMESSKVFVGGISFSTDDQSLR
Sbjct: 1   MAFLSKFGNILRQGANKRVGLDLHRSSLSLCQAVRWMSSMESSKVFVGGISFSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV+EARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 D---RARGGGGGY--GGGGYGGGGYGGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGG 180
           D   R  GGGGGY  GGGGYGGGGYGGGGGYG GGGYG GGGYG GGGGAYGGGGYSGGG
Sbjct: 121 DNRPRGFGGGGGYGGGGGGYGGGGYGGGGGYGAGGGYGAGGGYG-GGGGAYGGGGYSGGG 180

Query: 181 AGGYGGYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASNFATGNTFGSE 240
           A          GGNYG GSGGN+SNDYASDNRGSVGGFGGNDAGYNAASNFA+GNTFGSE
Sbjct: 181 A----------GGNYGRGSGGNYSNDYASDNRGSVGGFGGNDAGYNAASNFASGNTFGSE 240

Query: 241 SNAGYGS---SDYFAKSEGE-QFGSNETNTMKASGEDHFEENARDEDDSNDFAKRA 288
           SNAG+GS    DYFA   GE QFGSNETN+M ASGE+ FEENARD DD++DFAKRA
Sbjct: 241 SNAGFGSGSGGDYFANGSGEGQFGSNETNSMNASGEEQFEENARDGDDTDDFAKRA 285

[Close]

BLAST of CSPI01G02900 vs. NCBI nr
Match: XP_038878732.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 324.3 bits (830), Expect = 1.0e-84
Identity = 238/325 (73.23%), Postives = 255/325 (78.46%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFL KFGNILRQGANKRIGLDL  SSLS+ QAVRWMSSM+SSK+FVGGIS++TDDQSLR
Sbjct: 1   MAFLGKFGNILRQGANKRIGLDLQASSLSICQAVRWMSSMQSSKLFVGGISYNTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF KYGEV+EAR+IVDRETGRSRGFGFVT+TSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFAKYGEVLEARIIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRAR--GGGGGY-------GGGGYGGGGYGGGGGYG-GGGGYGGGGGYGAGGGGAYGGGG 180
           DR R  GGGGGY       GGGGYGGGGYGGGGG G GGGGYGGGGGY  GG G YGGGG
Sbjct: 121 DRTRGFGGGGGYGGGSYGGGGGGYGGGGYGGGGGDGYGGGGYGGGGGYSGGGAGGYGGGG 180

Query: 181 YSGGGAGGYGGYSGTG---GGNYGGGSGGNFSNDYASDNRGSV----GGFGGNDAGYNAA 240
             GG   G GGYSGTG   GGNY  GSGGN+SND ASDN GSV    GGFGGNDAGYNAA
Sbjct: 181 SGGGYGDGSGGYSGTGYSSGGNYSRGSGGNYSNDNASDNLGSVGTGGGGFGGNDAGYNAA 240

Query: 241 SNFATGNTFGSESNAGYGS-----SDYFAKS------------EGEQFGSNETNTMKASG 288
           SNFA+GNT  S +NAG+G+     SDYFA S             GEQFGS ETNTM ASG
Sbjct: 241 SNFASGNTHDSGTNAGFGNVSGGGSDYFANSGFDASSGVGGYTGGEQFGS-ETNTMDASG 300

[Close]

BLAST of CSPI01G02900 vs. NCBI nr
Match: XP_022921902.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 296.2 bits (757), Expect = 3.1e-76
Identity = 225/318 (70.75%), Postives = 250/318 (78.62%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSK GNILRQGANKR GL+    SLS+ QAVRWMSSM+SSKVF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 121 DRARG-GGGGY--GGGGYGGGGY-GGGGGYGGGGGYGGGGGYGAGGGGAYGGGGYSGGGA 180
           DR+RG GGGGY  GGGGYGGGGY GGGGGYGGGGG  GGG YG GGGG+YGGG Y GGG+
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGGGYGGGSYG-GGGGSYGGGSYGGGGS 180

Query: 181 GGYGGYSGTGGGNYGGG--SGGNFSNDYASDNRGSVG--GFGGNDAGYNAASNFATGNTF 240
           GG GGY G  GG +G G  +G N+S+ + S ++GS G  G GGNDAG NAASNFA+GNTF
Sbjct: 181 GG-GGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFASGNTF 240

Query: 241 GSESNAGY------GSSDYFAKS------------EGEQFGSNETNTMKASGE----DHF 288
           GS ++AG+      G  DYFA S             G+QFGSNE NT+ ASG+    +  
Sbjct: 241 GSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQL 300

[Close]

BLAST of CSPI01G02900 vs. NCBI nr
Match: KAG6589603.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.4 bits (755), Expect = 5.2e-76
Identity = 224/323 (69.35%), Postives = 248/323 (76.78%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSK GNILRQGANKR GL+L   SLS+ QAVRWMSSM+SSKVF+GGIS+STDDQSLR
Sbjct: 15  MAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 74

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 75  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 134

Query: 121 DRAR--------GGGGGYGGGGYGGGGYG-GGGGYGGGGGYGGGGGYGAGGGGAYGGGGY 180
           DR+R        GGGGGYGGGGYGGGG G GGGGYGGGGGYGGGG YG GGGG+YGGG Y
Sbjct: 135 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYGGGGGYGGGGSYG-GGGGSYGGGAY 194

Query: 181 SGGGAGGYGGYSGTGGGNYGGG--SGGNFSNDYASDNRGSVG--GFGGNDAGYNAASNFA 240
            GG +GG GGY G  GG +G G  +G N+S+ + S ++GS G  G GGNDAG NAASNFA
Sbjct: 195 GGGVSGG-GGYGGESGGGFGSGFSAGDNYSSSFGSGSQGSGGNYGTGGNDAGSNAASNFA 254

Query: 241 TGNTFGS------ESNAGYGSSDYFAKS------------EGEQFGSNETNTMKASGE-- 288
           +GNTFGS      ++N   G  DYFA S             G+Q GSNE NT+ ASG+  
Sbjct: 255 SGNTFGSGTSADFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQLGSNEANTLNASGDQG 314

[Close]

BLAST of CSPI01G02900 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 182.6 bits (462), Expect = 4.6e-46
Identity = 170/303 (56.11%), Postives = 198/303 (65.35%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSKFGNIL+Q  NK++   +  SS SL QA+R MS   SSK+F+GG+++S D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAFTKYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 121 DRARG---GGGGY--GGGGYGG-GGYGGG-GGYGGGGGYGGG-GGYGAGGGGAYGG---G 180
           DR  G   GGGGY  GGGGYGG GGYGGG GGYGG GGYGGG GGYG   GG YGG   G
Sbjct: 121 DRTSGGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGNAAG 180

Query: 181 GYSGGGAGGYG----GYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGGNDAGYNAASN 240
           GY G GAGGYG    G+ G GGG    G  G+  N Y   +  S G  G     YN +S 
Sbjct: 181 GYGGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAVG----DYNGSSG 240

Query: 241 FATGNTFGSESNAGYGSSDYFAKS---EGEQFGSNETNTM---KASGEDHFEENARDEDD 283
           + + NT+GS SN G+     F  S      QFG + T      +  GED F    + E  
Sbjct: 241 YGSANTYGS-SNGGFAGDSQFGGSPVGNSSQFGGDNTQFTAGGQFGGEDQFGSMEKSETK 295

[Close]

BLAST of CSPI01G02900 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 125.2 bits (313), Expect = 8.7e-29
Identity = 156/307 (50.81%), Postives = 188/307 (61.24%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAFLSK G +  Q ++         +S S+ Q++R MS   SSK+FVGGIS+STD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSH------VTASSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           EAF+KYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 121 DRARG-GGGGYG--GGGYGG--GGYGG-GGGYGGG-GGYGGGGGY--GAGGGGAYGGGGY 180
           +R  G GG G+G  GGGYG   GGYG   GGYGGG GGYGG   Y   AGGGG YGG   
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSS 180

Query: 181 SGGGAGGYGG---YSGTGGGNYGGGSGGNFSNDYASDNRGSVGGF------GGNDAGYN- 240
            GG AGGYGG   YSG   G  GGG G NF         G VGG          +AG++ 
Sbjct: 181 YGGNAGGYGGNPPYSGNAVGG-GGGYGSNFGGGGGYGVAGGVGGSENFAQGSSTNAGFDD 240

Query: 241 -AASNFATGNTFGSESNAGYGSSDYFAKSEGEQFGSNETNTMKASGEDHFEENARDEDDS 288
              SN   GN    ++ +G G  + F  S+  QFG  E N    +G   F     D+ D 
Sbjct: 241 KFESNQPLGNDTDHQTESGLGGDEQFGGSD-NQFGDAE-NGNTENGPVGF-----DQTDD 289

[Close]

BLAST of CSPI01G02900 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-22
Identity = 89/176 (50.57%), Postives = 116/176 (65.91%), Query Frame = 0


Query: 1   MAFLSKFGNILRQGANKRIGLDLHRSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLR 60
           MAF +K G +LRQ  +    + +     S+  ++R M    S+K+F+GG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISSNGNVPV----TSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120
           +AF  +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 121 DRARGGGGGYGGGGYGGGGYGGGGGY-GGGGGYGGGGGYGAGGGGAYGGGGYSGGG 176
           DR                 YGGGGGY GGGGGYGGGGG   GGGG YGGGG  GGG
Sbjct: 121 DRPS-----------APRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYGGGGDGGGG 157

[Close]

BLAST of CSPI01G02900 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-19
Identity = 98/176 (55.68%), Postives = 120/176 (68.18%), Query Frame = 0


Query: 44  KVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + FVGG++++TDD++L  AF +YG+VI++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 104 LDGQDLHGRRVRVNYANDRARGGGGGYGGGGYGGGGYGGGGGY-GGGGGYGGGGGYGAGG 163
           ++GQDL GR + VN A  R  GGGGG+ GGG GG   GGGGGY GGGG YGGGGG   GG
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGGGGGRREGG 128

Query: 164 GG-AYGGGGYS--GGGAGGYGGYSGTGGGNYGGGSGGNFSNDYASDNRGSVGGFGG 216
           GG + GGGGYS  GGG G YGG    GGG YGGG GG +         G  GG GG
Sbjct: 129 GGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGY---------GGSGGGGG 175

[Close]

BLAST of CSPI01G02900 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-17
Identity = 86/150 (57.33%), Postives = 106/150 (70.67%), Query Frame = 0


Query: 44  KVFVGGISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 103
           + FVGG++++TDD++L  AF +YG+VI++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 104 LDGQDLHGRRVRVNYANDRARGGGGGY-GGGGYGGGG---YGGGGGYGGGGGYG--GGGG 163
           ++GQDL GR + VN A  R  GGGGG+ GGG YGGGG    GGGG  GGGGGY   GGGG
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGG 128

Query: 164 YGAGGGGAYGGGGYSGGGAGGYGGYSGTGG 188
              GGG   GGGGY GG  GGYGG  G GG
Sbjct: 129 GSYGGGRREGGGGYGGGEGGGYGGSGGGGG 158

The following BLAST results are available for this feature:

BLAST of CSPI01G02900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	6.4e-45	56.11	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	1.2e-27	50.81	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	4.2e-20	60.51	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
P10979	1.6e-19	56.41	Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN...	[more]
Q03250	3.0e-18	55.68	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]

BLAST of CSPI01G02900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPA9	2.7e-126	97.21	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G013770 PE=4 SV...	[more]
A0A5A7UWK3	1.7e-104	85.81	Glycine-rich RNA-binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S3BVW4	1.7e-104	85.81	glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucumis melo OX=3656 G...	[more]
A0A6J1E1P2	1.5e-76	70.75	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1I7Z2	2.4e-74	69.47	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]

BLAST of CSPI01G02900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648448.2	1.8e-129	99.30	glycine-rich RNA-binding protein blt801 [Cucumis sativus] >KAE8652435.1 hypothet...	[more]
XP_008453280.1	3.5e-104	85.81	PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Cucumis melo]...	[more]
XP_038878732.1	1.0e-84	73.23	glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida]	[more]
XP_022921902.1	3.1e-76	70.75	glycine-rich RNA-binding protein 3, mitochondrial-like [Cucurbita moschata]	[more]
KAG6589603.1	5.2e-76	69.35	Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper...	[more]

BLAST of CSPI01G02900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	4.6e-46	56.11	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	8.7e-29	50.81	glycine-rich RNA-binding protein 5	[more]
AT4G13850.1	2.1e-22	50.57	glycine-rich RNA-binding protein 2	[more]
AT2G21660.1	2.1e-19	55.68	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	1.2e-17	57.33	cold, circadian rhythm, and rna binding 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 44..117 e-value: 2.7E-30 score: 116.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 45..115 e-value: 2.6E-22 score: 78.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 43..121 score: 22.281914
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 26..141 e-value: 2.8E-33 score: 116.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..263
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 1..163
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 1..163
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 38..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G02900.1	CSPI01G02900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding