Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGACTTGCCGCAAAATACTCTTCTGCGGCCTCCCCCTGTTGTCGACGAGGCAGCCACCAGAGAACAGACATTGGAACGAAGGCTCTTCCCAGCCTAAGTTTCTTGATGGTGAGACAAATGCCCATCCAATCCAACCAAAGCCAATACTTAACACCTCTCACCCTGCCCGAGATGATACGTTAGATGGTGAGGAAGAAGATATCTTCACGTTCATCACGCGGACTGTTTCCACACCCATGATTGAAGCTCTAGATCATGTTGCAAGCATGCAAAGAGACTTGAAATTTCAGTTCTATCAATTTCGAGAGGAGCTAAACGAGGTGTGTCTTGAGACGGATAAGATGAAAGCCACTGTTCAACGTCTTGAGATGGATGAGATCCATTATGCTGATCTTCATAGAGATCTTGAATTTCTTGAACAAAAGTTGGACAATCATCAGCAAGGTCTGGAGAGCTCATTGCCAATGTTAGGAAAAATGAACTCATTGTTCAACGCCTCTCTCAAAGGCAAAACATGCGGTTCATCACGCTGA mRNA sequence ATGACTTGCCGCAAAATACTCTTCTGCGGCCTCCCCCTGTTGTCGACGAGGCAGCCACCAGAGAACAGACATTGGAACGAAGGCTCTTCCCAGCCTAAGTTTCTTGATGGTGAGACAAATGCCCATCCAATCCAACCAAAGCCAATACTTAACACCTCTCACCCTGCCCGAGATGATACGTTAGATGGTGAGGAAGAAGATATCTTCACGTTCATCACGCGGACTGTTTCCACACCCATGATTGAAGCTCTAGATCATGTTGCAAGCATGCAAAGAGACTTGAAATTTCAGTTCTATCAATTTCGAGAGGAGCTAAACGAGGTGTGTCTTGAGACGGATAAGATGAAAGCCACTGTTCAACGTCTTGAGATGGATGAGATCCATTATGCTGATCTTCATAGAGATCTTGAATTTCTTGAACAAAAGTTGGACAATCATCAGCAAGGTCTGGAGAGCTCATTGCCAATGTTAGGAAAAATGAACTCATTGTTCAACGCCTCTCTCAAAGGCAAAACATGCGGTTCATCACGCTGA Coding sequence (CDS) ATGACTTGCCGCAAAATACTCTTCTGCGGCCTCCCCCTGTTGTCGACGAGGCAGCCACCAGAGAACAGACATTGGAACGAAGGCTCTTCCCAGCCTAAGTTTCTTGATGGTGAGACAAATGCCCATCCAATCCAACCAAAGCCAATACTTAACACCTCTCACCCTGCCCGAGATGATACGTTAGATGGTGAGGAAGAAGATATCTTCACGTTCATCACGCGGACTGTTTCCACACCCATGATTGAAGCTCTAGATCATGTTGCAAGCATGCAAAGAGACTTGAAATTTCAGTTCTATCAATTTCGAGAGGAGCTAAACGAGGTGTGTCTTGAGACGGATAAGATGAAAGCCACTGTTCAACGTCTTGAGATGGATGAGATCCATTATGCTGATCTTCATAGAGATCTTGAATTTCTTGAACAAAAGTTGGACAATCATCAGCAAGGTCTGGAGAGCTCATTGCCAATGTTAGGAAAAATGAACTCATTGTTCAACGCCTCTCTCAAAGGCAAAACATGCGGTTCATCACGCTGA Protein sequence MTCRKILFCGLPLLSTRQPPENRHWNEGSSQPKFLDGETNAHPIQPKPILNTSHPARDDTLDGEEEDIFTFITRTVSTPMIEALDHVASMQRDLKFQFYQFREELNEVCLETDKMKATVQRLEMDEIHYADLHRDLEFLEQKLDNHQQGLESSLPMLGKMNSLFNASLKGKTCGSSR*
Homology
BLAST of CSPI01G02840 vs. NCBI nr
Match: KAE8652433.1 (hypothetical protein Csa_013852 [Cucumis sativus]) HSP 1 Score: 354.8 bits (909), Expect = 4.5e-94 Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0
Query: 1 MTCRKILFCGLPLLSTRQPPENRHWNEGSSQPKFLDGETNAHPIQPKPILNTSHPARDDT 60
MTCRKILFCGLPLLS RQPP+NRHWNEGSSQPKFLDGETNAHPIQPKPILNTSHPARDDT
Sbjct: 1 MTCRKILFCGLPLLSMRQPPKNRHWNEGSSQPKFLDGETNAHPIQPKPILNTSHPARDDT 60
Query: 61 LDGEEEDIFTFITRTVSTPMIEALDHVASMQRDLKFQFYQFREELNEVCLETDKMKATVQ 120
LDGEEEDIFTFITRTVSTPMIEALDHVASMQRDLKFQFYQFREELNEVCLETDKMKA VQ
Sbjct: 61 LDGEEEDIFTFITRTVSTPMIEALDHVASMQRDLKFQFYQFREELNEVCLETDKMKAIVQ 120
Query: 121 RLEMDEIHYADLHRDLEFLEQKLDNHQQGLESSLPMLGKMNSLFNASLKGKTCGSSR 178
RLEMDEIHYADLHRDLEF EQKLDNHQQGLESSLPMLGKMNSLFNASLKGKTCGSSR
Sbjct: 121 RLEMDEIHYADLHRDLEFREQKLDNHQQGLESSLPMLGKMNSLFNASLKGKTCGSSR 177
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAE8652433.1 | 4.5e-94 | 97.74 | hypothetical protein Csa_013852 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 129..149 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 19..58 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 19..36 |
Relationships
The following mRNA feature(s) are a part of this gene:
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