CSPI01G02230 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G02230
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L34
Location	Chr1: 1453708 .. 1455570 (+)
RNA-Seq Expression	CSPI01G02230
Synteny	CSPI01G02230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGCGTACTAACCGTCAGATCTAGGGCAACTAGGTATTTTATCTCATCCTCCAATGTTGAGTACAAGTCTCTGCAGCAGCCTCCACTCCCAGAGCAGCGAAGAAGAGAGGAAGAATCATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTCGTGAAAACCCCTGGTAAACTCTCGGATTCCTTCTCATAGCTATTCTATCAAGTCTCTTTGAACTTCAATGTCAATCAATCGGATTTCGTATTTATTGATTCTGTTCTAATCATTTTCTTCTATTTTGTGTTTAGGTGGGAAGCTTGTGTATCAGACTACCAAGAAAAGAGCTAGTGGACCCAAATGTCCGGTTACCGGCAAAAGGATTCAGGGGGTATGTATTCGATCATTCTTATCTGCCTCTTTTATGACTTAAAATTGTTTATGTTTTGATTTATTTATGATGGTTATGTTATCTCTTTGTAGTCTACATCTTTGTGCTAAATACCTTTAAAACCTATTTTGTTGATAAGGAAGGATTAAATAAAAACTGTGATAGTTTATTCTAGTTGCCGCATTTGTGTTGCATTAGGGAAAAAATTGGTCTCCCAGTACTGAAATTTTGGATTTTGGTTCTTTATGATCGGCACATTACCTGTTACTGAATGGCAGACTTTACATGCTAAAGTGCTCTCATAATCAGAACCAGAATATACTGTTCTATACTTTTGTTTAGGTATCGTATTTTTTAACAGAAGGGTAATTTGTATTACTTCTCTATAATTGTGGTAAGGATTCTTTACTGACCTAAACATGATTCCGAATGTTGGACTCCTCATTCTTTTAAACTGAATCCTAATGGTACTCATGCAGAATATCCTTTCGTTTTATATGTTAAGATATAATAGCTGAATTATCTTAGGTCTGTTCTCAAGAAGGTGTTAATAATTGTTCGGTTTTCAATTTTGGAAATACGTATATGGATTTAGTATAGATAGACATGTTGTGTGCGTATCTCTTTGCACCACACCAACGTGTCTATCTATACTAAATCCATTAATTGTAGATTGGTTGATTCATGAATGTAAAATTTTGCATCATTACCTGCACTATTTATATGTTGGTAGACACACTTGCATTTACATTTGGTACTTTAGTTGATTTTGAACTATATGATAGATAGCCTTGTAAAGTTAAGAATGGTTTTCAGAAATTGGGTATTTTGTAATTTAGTTCATTTGCGTTCCAACCTTTGGTAAAGATGGCTCAATCTTGATTATGTTAAGTTAATCTGTGTAAGTTTTTGATTATTGCAGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGATTAGCTAGGAACCGCAGGACTGTGAATCGTGCATACGGTGGCGTTTTATCTGGCAGTGCTGTGAGGGAGAGGTTGGCTTTCCATTATTTCTCATCATCTGTTTGATTGTGTTTATGATAGTAAAAGGTATTGTGCTAATCTTTATTTGGTTTGGGATAGGATCATCCGGGCCTTCTTGGTGGAAGAGCAGAAGATTGTCAAGAAGGTATTGAAGATTCAGAAGGCTAAGGAAAAACTGGCATCAAAGAGCTAAATTGATTATGTTTGTGGTTTTGTTTTTAGAAAATCGATGAAATTTTGACGTTTTTGTGATGTGATGCTGAATTTTAGCGATTACTATTTAAAGTTTGTTTTTGGAAGAACGATGTAGAAGATGTCAAAGTATTTGACTGTTTTTAGCATTTGAGTTAATTGAAGATTTAATTGAAGACAACATGTGGTATATAAGCTTTGATTTAATATTGAATTAAGAAAGTCAGTTGAGAAGCATAAGCAGTAAGCAAC

mRNA sequence

AACGCGTACTAACCGTCAGATCTAGGGCAACTAGGTATTTTATCTCATCCTCCAATGTTGAGTACAAGTCTCTGCAGCAGCCTCCACTCCCAGAGCAGCGAAGAAGAGAGGAAGAATCATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTCGTGAAAACCCCTGGTGGGAAGCTTGTGTATCAGACTACCAAGAAAAGAGCTAGTGGACCCAAATGTCCGGTTACCGGCAAAAGGATTCAGGGGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGATTAGCTAGGAACCGCAGGACTGTGAATCGTGCATACGGTGGCGTTTTATCTGGCAGTGCTGTGAGGGAGAGGATCATCCGGGCCTTCTTGGTGGAAGAGCAGAAGATTGTCAAGAAGGTATTGAAGATTCAGAAGGCTAAGGAAAAACTGGCATCAAAGAGCTAAATTGATTATGTTTGTGGTTTTGTTTTTAGAAAATCGATGAAATTTTGACGTTTTTGTGATGTGATGCTGAATTTTAGCGATTACTATTTAAAGTTTGTTTTTGGAAGAACGATGTAGAAGATGTCAAAGTATTTGACTGTTTTTAGCATTTGAGTTAATTGAAGATTTAATTGAAGACAACATGTGGTATATAAGCTTTGATTTAATATTGAATTAAGAAAGTCAGTTGAGAAGCATAAGCAGTAAGCAAC

Coding sequence (CDS)

ATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTCGTGAAAACCCCTGGTGGGAAGCTTGTGTATCAGACTACCAAGAAAAGAGCTAGTGGACCCAAATGTCCGGTTACCGGCAAAAGGATTCAGGGGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGATTAGCTAGGAACCGCAGGACTGTGAATCGTGCATACGGTGGCGTTTTATCTGGCAGTGCTGTGAGGGAGAGGATCATCCGGGCCTTCTTGGTGGAAGAGCAGAAGATTGTCAAGAAGGTATTGAAGATTCAGAAGGCTAAGGAAAAACTGGCATCAAAGAGCTAA

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS*

Homology

[Close]

BLAST of CSPI01G02230 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.0e-57
Identity = 115/120 (95.83%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of CSPI01G02230 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55
Identity = 111/120 (92.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of CSPI01G02230 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]

BLAST of CSPI01G02230 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-54
Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of CSPI01G02230 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.3e-54
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of CSPI01G02230 vs. ExPASy TrEMBL
Match: A0A1S3BV34 (60S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI01G02230 vs. ExPASy TrEMBL
Match: A0A5A7UWQ0 (60S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00210 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI01G02230 vs. ExPASy TrEMBL
Match: A0A0A0LK03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G338890 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI01G02230 vs. ExPASy TrEMBL
Match: A0A6P6V549 (60S ribosomal protein L34 OS=Coffea arabica OX=13443 GN=LOC113717585 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.0e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of CSPI01G02230 vs. ExPASy TrEMBL
Match: A0A0A0LP37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009690 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.0e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGV+SGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVVSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI01G02230 vs. NCBI nr
Match: XP_004138165.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_004147322.1 60S ribosomal protein L34 [Cucumis sativus] >XP_008453201.1 PREDICTED: 60S ribosomal protein L34 [Cucumis melo] >XP_008453217.1 PREDICTED: 60S ribosomal protein L34 [Cucumis melo] >XP_008460833.1 PREDICTED: 60S ribosomal protein L34 [Cucumis melo] >KAA0057939.1 60S ribosomal protein L34 [Cucumis melo var. makuwa] >KAA0057954.1 60S ribosomal protein L34 [Cucumis melo var. makuwa] >KAA0063093.1 60S ribosomal protein L34 [Cucumis melo var. makuwa] >KGN62245.1 hypothetical protein Csa_016921 [Cucumis sativus] >KGN63670.2 hypothetical protein Csa_013763 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 5.6e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI01G02230 vs. NCBI nr
Match: XP_027098139.1 (60S ribosomal protein L34 [Coffea arabica] >XP_027153728.1 60S ribosomal protein L34 [Coffea eugenioides])

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of CSPI01G02230 vs. NCBI nr
Match: XP_038889603.1 (60S ribosomal protein L34 [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]

BLAST of CSPI01G02230 vs. NCBI nr
Match: XP_004138175.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protein L34 [Momordica charantia] >XP_022922091.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933946.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933947.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964734.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964735.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022969674.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022970352.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973066.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973072.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_023515397.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023519212.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023520847.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529309.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529311.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_038878407.1 60S ribosomal protein L34-like [Benincasa hispida] >KAG6586008.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019300.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6587535.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG6589504.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021512.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]

BLAST of CSPI01G02230 vs. NCBI nr
Match: KAG6583599.1 (Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 745 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 804

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 805 EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 864

[Close]

BLAST of CSPI01G02230 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56
Identity = 111/120 (92.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]

BLAST of CSPI01G02230 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 213.8 bits (543), Expect = 7.8e-56
Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]

BLAST of CSPI01G02230 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 210.7 bits (535), Expect = 6.6e-55
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]

BLAST of CSPI01G02230 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 174.1 bits (440), Expect = 6.8e-44
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLARNRRTVNRAYGGVLSGSAVRERII 93
          EYKRSRL+RNRRTVNRAYGGVLSGSAVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:

BLAST of CSPI01G02230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41098	4.0e-57	95.83	60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1	[more]
Q42351	2.2e-55	92.50	60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1	[more]
P40590	2.2e-55	93.33	60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1	[more]
Q9FE65	1.1e-54	92.44	60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1	[more]
Q9LJW6	9.3e-54	90.83	60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1	[more]

BLAST of CSPI01G02230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BV34	2.7e-56	100.00	60S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=3 SV=1	[more]
A0A5A7UWQ0	2.7e-56	100.00	60S ribosomal protein L34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LK03	2.7e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G338890 PE=3 SV=1	[more]
A0A6P6V549	6.0e-56	99.17	60S ribosomal protein L34 OS=Coffea arabica OX=13443 GN=LOC113717585 PE=3 SV=1	[more]
A0A0A0LP37	6.0e-56	99.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009690 PE=3 SV=1	[more]

BLAST of CSPI01G02230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138165.3	5.6e-56	100.00	60S ribosomal protein L34 [Cucumis sativus] >XP_004147322.1 60S ribosomal protei...	[more]
XP_027098139.1	1.2e-55	99.17	60S ribosomal protein L34 [Coffea arabica] >XP_027153728.1 60S ribosomal protein...	[more]
XP_038889603.1	1.6e-55	98.33	60S ribosomal protein L34 [Benincasa hispida]	[more]
XP_004138175.3	1.6e-55	99.17	60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protei...	[more]
KAG6583599.1	1.6e-55	99.17	Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CSPI01G02230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26880.1	1.6e-56	92.50	Ribosomal protein L34e superfamily protein	[more]
AT1G69620.1	7.8e-56	92.44	ribosomal protein L34	[more]
AT3G28900.1	6.6e-55	90.83	Ribosomal protein L34e superfamily protein	[more]
AT1G26880.2	6.8e-44	92.39	Ribosomal protein L34e superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008195	Ribosomal protein L34Ae	PRINTS	PR01250	RIBOSOMALL34	coord: 66..88 score: 45.34 coord: 13..26 score: 59.18 coord: 44..54 score: 50.0 coord: 26..43 score: 53.57
IPR008195	Ribosomal protein L34Ae	PFAM	PF01199	Ribosomal_L34e	coord: 1..96 e-value: 1.5E-38 score: 130.9
IPR008195	Ribosomal protein L34Ae	PANTHER	PTHR10759	60S RIBOSOMAL PROTEIN L34	coord: 1..120
None	No IPR available	GENE3D	6.20.340.10		coord: 39..120 e-value: 2.1E-36 score: 125.7
None	No IPR available	GENE3D	6.20.370.70		coord: 1..37 e-value: 4.5E-22 score: 79.5
None	No IPR available	PANTHER	PTHR10759:SF14	SUBFAMILY NOT NAMED	coord: 1..120
IPR018065	Ribosomal protein L34e, conserved site	PROSITE	PS01145	RIBOSOMAL_L34E	coord: 15..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G02230.1	CSPI01G02230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome