CSPI01G01440 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G01440
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribosomal RNA-processing protein 40
Location	Chr1: 963602 .. 967609 (-)
RNA-Seq Expression	CSPI01G01440
Synteny	CSPI01G01440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTAAAAAAGTGACCACGTGAAATTTGATTTTCTCCTAATAAATTCTCTAAACAATTCGTTCCGCACTTGTTCGCGCGTATACTTCCTTCTCTTTCGTGTTCATCGCTCACCATTCTTCCGATCGTCGCTTGCAAGTACAAGATTTTTCTTACTTGTATCTGCAACAATGGTTGAAAAGCCTTCTAGTTCGTCGTCTACTCTCGTTGATCAGCCAGTTGTAAGCTTGAAATCAATCTCGTCTGTTCGATGTTCTGCAGTTTCTTAATGAATTGGAGTATTCAGGCATTTTTGTTGGAATGTAAAATTGTTTAGGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGTGCCTCTTAGGGTTTTCTTTCTTTCAATGTTTATGCTTCTATTATATGTTTCTGCTTTTCAACACCCATTAGTTTTCATTTGCAGTTGTGTTGTTTACAAGATTGCTTAATTTCATGTTTTTTTTTTTTTTAAAACAATCTTTCAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGGTAGGTAAATGACATTGTTCAAATTGGCATTGAGGATCCTTATATTGTTTGTTCTTTCAGCTATCTTTTGAATTATGATCTTCAACGCTAGTTTCGGGGGTTTTCTTTAATCGAATTGCTAGCATTATCATCCTGACGTTTACTTTTTATATAAATTGCTGTTTTCCAGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTACTTGACTCTAGAGCCGACGTAAGTGCTGCTTTATTGTTAAAACATGTATATGTTCAATTATGAAATAATTGGCCCATGCTGTTTCTGATTGTCGTGTGTGGATGGTTATGGTTTGACTGGTATCCACATACGCTATCGTTGAGGGAAATAAAAGAATATATAAGTGAAAGAGTGCCTGGCCCTAGCTACAGAAAAAGACACCAAACCGAAAGAACAATACCAAGCTCGTAATTACAAAAAAATAGGTGCTAAACTTAGCTTCCTCCCAAACTTTCTTACCAGACCGCCCAATCTCTCTACAAATCTAATATGCATTTCATTCAAATGTCACAAAATTACAAAGAAAGTAGCAGCCCACAAAATTTTGCCCTTCTCTTTGAAGGGAGGAGGATTTAGAAGCACTTCCTTCAGCAAAACCTTGCCATATGGCTCGTATCTAATTTGAACCGGATAAACACTAAATAATTTTATTCAGTGACTCCGAAGGTAGTGAGCAAACTAATCCCATAACAAATGATCTAGGTCCTTTTCCTACCTTCTGCAAAGAATGCATTGCAAGGGTATCCATGTCTAATTAGTCCTGTGATACTAGGGAAGATTTAGGTAAACATCAATTTGTTTTTATCAGCGATTCAACGGTTTGTGTTAATAGCCAATGCAGATTATTCAAGAGCTCTCCTCTGTGAGAACCCTCGAAATAAATATGAGTCCCAAAACAAAATACCAAGTGCATACCCTTTCTTCTCTCAGACTTGCCCTTAGAGTTCTATCCACTTGCACAGAGCACTCAATGCACTCTCTACCTAACTCTAACTGTAACACCTAGGCTCCACGAAGTCACAGCAGACATGCACCACAAAGATGCTCATTTCTCCAGTACAACAATATCTTTAGGCTTCTCTATTTCCTCTTTTTCATTTCTATGTGTATAAACCTTGGGAAGTTGGAGTCTTAGATTTTTGTTCGATTACCTTTTAAGTTATCATCATTTAATCATTTCTTTTCTCGTTTGCAGAATTTTCTTGTTGACATAAAAGGTCCGTCGTTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGGTATGCATAATTTTGTTATTTTCACTATATGACCTTTCAATATAGTTGCTCCTCTGTCTTCCTTTTAGGTAAGCATCAATTTGTTTTTATCATGTCCTATTGATTCTCTGTTTCGTAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTAAACCCTGGAATGAATCCCGAGTTGGCATGCACCGATGGTTAGTTAACTTCTCCATATCTCCATGTCCAATAAATTTTTTGAAGGTTTAAAACAGTCTCCACCAAAGAAATATATTGATGTTCCTGTAAACTTATCCTCTGAAGAGGGGTGGACAGCATCTGGGTTCTCCATGCAAGTTCATGTTTCGTTTCGGTTTTTGGTTGTTGCTTTTCGGTTTTTGGTTGTTGTGATAATATGTCTCACGTGAGTATCATTTTGTTTTGTGTAGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGTAAGCTAAATTGCTTTTCTTAGTTTCTCTTCCTTTTTTAAGTCATTCTTCTGATCATTCATTCTCTTTGATTTTATCCTCTCATCTAGGCTTCTAAGTTCTCCCTCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGCGTTTGGGTACTTTTCTTCAAATCCTTACATTTTCATTGCTAAACTTTATGGGTTTACCATGCATAATTCTCTTCCTATACTTCCTTCTATCACACATTAACCTTCTATTTATTGAAGAAAAAATTTCCTCGTCCGACAGTTATATCTGGTTGTTGGTAACTTGGGATTATTACTCTCCATTCTTCAGCTTCCGCTTTTACTCTCTAACATAACTCTTCTTTAAAACTTGAAGATCTAATTCTTGGGTAAAAAAAAAACAATTTTGGTCCTGAATTTTCATGGAAGCAACAATTTAATCCTTAAACTTGATAACAATTTAGTTCCTAAACTTTAACAAGAAACCAGTGAAATTTACGATTGAAGTTCAAGAGCTTCCCTATCTCTCTGCAAGGAGACCTAATACAAGATAATTTCCAAAAAGCTGCCCTCCCCAAATAACCAAAACAGTATTTTTACTTATACGTAAAGAGTCACGGCCCCCTAACTACAATATTCTCGGGGCCCACATTTACCACTTCCTTACCTTCTCTCTTCTCATGCCTACAAGCATATCTTTGTACTATGGGTGGCCCAACAAAATATAAGTAAGATTTAATAAAATTGGGAATCAAACTTATGTATAAACTATAATAAGTAAGTTATGTAATAAATATCGACAATTTTCACGAAGTCTTTTATGATAATGGACTAAATCTGGTAAAGTATAGGGACTAAATCACTCTTTACTTTGTTATTTTCATGAAAGTTAGGATGGAAAGTGTTCTTTTTAACCAAATTTCTTCTACCAACCTTACTAATAAATAGCCCTTTATTACTTTTGGCTTCTCCATTTCTTCTCCCAGGTCAATGCTGATTCTCCATCTACAATCATTGTTGTTTCGAATGCAATATTGAACTCCGAAACACTCTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCATGCCAATTTAAAGCTGTCAAGTTAGAATTCTAATTTGTAGTCATGTATTATTTAGCTCAAGTCTTACGAGAACAGTAATTAGCCAAATCTTTTCTTCTCTTTGGAATTGAGAAAGATTCATGATTTTCTTATATTCATTAACTCTCAAGTTCAATGGCTATCTGGTCCACTTGTTAAGGAGTTATTGGCCTTGAAAAAGAATTAAAGATAGTGAGTGGATTAAATTTTCATAATTCTATTTGTTTAGCAGATATACCCGAAGGGAAAGAAGAGCAGACCTACTCCAAATTTAATACCACTAATTTAGTTTTGTTAAATTGTTCAATATCAATTGTATCCGAATATTGGGTCTGTTTAGGACCTATGGGACGTCCCAAAATTTTATAATTGGAAAGGAAATCTTGTCGAAAATGGTTGATAAGATAGAGACTATGAAATTTTTAATAAACTC

mRNA sequence

GGTTAAAAAAGTGACCACGTGAAATTTGATTTTCTCCTAATAAATTCTCTAAACAATTCGTTCCGCACTTGTTCGCGCGTATACTTCCTTCTCTTTCGTGTTCATCGCTCACCATTCTTCCGATCGTCGCTTGCAAGTACAAGATTTTTCTTACTTGTATCTGCAACAATGGTTGAAAAGCCTTCTAGTTCGTCGTCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTACTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCGTTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTAAACCCTGGAATGAATCCCGAGTTGGCATGCACCGATGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGTTCTCCCTCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGCGTTTGGGTCAATGCTGATTCTCCATCTACAATCATTGTTGTTTCGAATGCAATATTGAACTCCGAAACACTCTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCATGCCAATTTAAAGCTGTCAAGTTAGAATTCTAATTTGTAGTCATGTATTATTTAGCTCAAGTCTTACGAGAACAGTAATTAGCCAAATCTTTTCTTCTCTTTGGAATTGAGAAAGATTCATGATTTTCTTATATTCATTAACTCTCAAGTTCAATGGCTATCTGGTCCACTTGTTAAGGAGTTATTGGCCTTGAAAAAGAATTAAAGATAGTGAGTGGATTAAATTTTCATAATTCTATTTGTTTAGCAGATATACCCGAAGGGAAAGAAGAGCAGACCTACTCCAAATTTAATACCACTAATTTAGTTTTGTTAAATTGTTCAATATCAATTGTATCCGAATATTGGGTCTGTTTAGGACCTATGGGACGTCCCAAAATTTTATAATTGGAAAGGAAATCTTGTCGAAAATGGTTGATAAGATAGAGACTATGAAATTTTTAATAAACTC

Coding sequence (CDS)

ATGGTTGAAAAGCCTTCTAGTTCGTCGTCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTACTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCGTTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTAAACCCTGGAATGAATCCCGAGTTGGCATGCACCGATGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGTTCTCCCTCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACAGCAGTTGGTTTAAATGGCCGCGTTTGGGTCAATGCTGATTCTCCATCTACAATCATTGTTGTTTCGAATGCAATATTGAACTCCGAAACACTCTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCATGCCAATTTAAAGCTGTCAAGTTAG

Protein sequence

MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLKLSS*

Homology

[Close]

BLAST of CSPI01G01440 vs. ExPASy Swiss-Prot
Match: Q7KWX9 (Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN=exosc3 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.2e-46
Identity = 99/218 (45.41%), Postives = 134/218 (61.47%), Query Frame = 0


Query: 11  TLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNK-YWVESSQ 70
           TL DQ VVPGDV+  + ++    +++G GL Q +D +  +K G LR+SK ++ YW+E+ Q
Sbjct: 3   TLKDQFVVPGDVIGKIGDL---KVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQ 62

Query: 71  KRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVR 130
           KRYVP  ED V+G +++  A++F VDI     A L   +FEG T+ N P   +G L+Y R
Sbjct: 63  KRYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCR 122

Query: 131 VVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLS 190
           V   N  M PE+ C     KA GFG L  GYM  CS GLS  LLS   C +L+ LGK + 
Sbjct: 123 VTVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSE-DCFLLQILGKHIP 182

Query: 191 FETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQ 228
           +E AVG+NGRVW+N+ S    IVVSN I NS+ +   Q
Sbjct: 183 YEIAVGVNGRVWINSGSNHNTIVVSNTIYNSQYIQDDQ 216

[Close]

BLAST of CSPI01G01440 vs. ExPASy Swiss-Prot
Match: Q8IPX7 (Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.9e-40
Identity = 90/234 (38.46%), Postives = 139/234 (59.40%), Query Frame = 0


Query: 7   SSSSTLVDQPVVPGDVVLDLSNMA-NETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWV 66
           S++ST+    V+PG+ +  +  +A ++ + LG GLR+  D +  SK G LR  +P  +WV
Sbjct: 2   SATSTI----VMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWV 61

Query: 67  ESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGAL 126
           ++ Q+RY+P   D +LGIV     D + VDI     A +  LAFE  +++N P    G L
Sbjct: 62  DNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDL 121

Query: 127 LYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLG 186
           +Y RV+  +  + PEL C ++ GK+   G+L DG+ F+CS  L RMLL   +CPVL +L 
Sbjct: 122 IYARVLNASADIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLRE-NCPVLAALT 181

Query: 187 KKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANL 240
           ++L +E AVG+NGR+W+ A S    + ++NAI   E  SG  +   +DK+  NL
Sbjct: 182 RELPYEIAVGVNGRIWLKAHSLKETVALANAISALEQ-SGCAE---IDKICGNL 226

[Close]

BLAST of CSPI01G01440 vs. ExPASy Swiss-Prot
Match: Q3T0E1 (Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-37
Identity = 88/255 (34.51%), Postives = 139/255 (54.51%), Query Frame = 0


Query: 8   SSSTLVDQPVVPGDVV--------------------LDLSNMANETIKLGGGLRQDQDAI 67
           ++ T++DQ V+PG+ +                    L+ +  +   +  G GLR+  D +
Sbjct: 19  AARTVLDQVVLPGEELLLPDQEDGDGPGGAGERPLRLNAAARSRGRVVCGPGLRRCGDRL 78

Query: 68  SVSKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSL 127
            V+K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   
Sbjct: 79  LVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEP 138

Query: 128 AFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGY 187
           A L  LAFEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +DG 
Sbjct: 139 ASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGL 198

Query: 188 MFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNS 236
           +F+ + GL R LL +P C +L+ +GK    E   G+NGR+WV A +    ++++N +   
Sbjct: 199 LFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEAC 258

[Close]

BLAST of CSPI01G01440 vs. ExPASy Swiss-Prot
Match: Q7TQK4 (Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3)

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-36
Identity = 81/205 (39.51%), Postives = 123/205 (60.00%), Query Frame = 0


Query: 37  GGGLRQDQDAISVSKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVLDSRADN 96
           G GLR+  D + V+K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D 
Sbjct: 68  GPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDI 127

Query: 97  FLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAA 156
           F VD+ G   A L  LAFEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A 
Sbjct: 128 FKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDMEPEMVCIDSCGRAN 187

Query: 157 GFGLL-KDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPSTI 216
           G G++ +DG +F+ + GL R LL +P C +++ LGK    E   G+NGR+WV A +    
Sbjct: 188 GMGVIGQDGLLFKVTLGLIRKLL-APDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQT 247

Query: 217 IVVSNAILNSETLSGVQQRIMVDKL 236
           ++++N +   E ++  Q++ +  +L
Sbjct: 248 LILANVLEACEHMTTEQRKQIFARL 271

[Close]

BLAST of CSPI01G01440 vs. ExPASy Swiss-Prot
Match: Q9NQT5 (Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3)

HSP 1 Score: 152.5 bits (384), Expect = 6.1e-36
Identity = 85/229 (37.12%), Postives = 131/229 (57.21%), Query Frame = 0


Query: 19  PGDVV---LDLSNMANETIKL--GGGLRQDQDAISVSKVGKLRFSKPNK------YWVES 78
           PG  V   L L+  A   +++  G GLR+  D + V+K G+LR  +P        YWV+S
Sbjct: 45  PGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDS 104

Query: 79  SQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLY 138
            QKRYVP   D V+GIV     D F VD+ G   A L  L+FEG T+RN P  ++G L+Y
Sbjct: 105 QQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIY 164

Query: 139 VRVVKVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPSCPVLESLGK 198
            + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +++ +GK
Sbjct: 165 GQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGK 224

Query: 199 KLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL 236
               E   G+NGR+WV A +    ++++N +   E ++  Q++ +  +L
Sbjct: 225 LYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRL 272

[Close]

BLAST of CSPI01G01440 vs. ExPASy TrEMBL
Match: A0A0A0LP58 (Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 PE=3 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.2e-131
Identity = 242/243 (99.59%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
           LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLK
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of CSPI01G01440 vs. ExPASy TrEMBL
Match: A0A5D3BFK9 (Ribosomal RNA-processing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001380 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.2e-129
Identity = 238/243 (97.94%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
           LESLGKKLSFETA+GLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLK
Sbjct: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of CSPI01G01440 vs. ExPASy TrEMBL
Match: A0A1S3CNB3 (Ribosomal RNA-processing protein 40 OS=Cucumis melo OX=3656 GN=LOC103502403 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.2e-129
Identity = 238/243 (97.94%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
           LESLGKKLSFETA+GLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLK
Sbjct: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of CSPI01G01440 vs. ExPASy TrEMBL
Match: A0A6J1E1A1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111429887 PE=3 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.5e-125
Identity = 231/243 (95.06%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQD DAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
           LES GKKLSFETAVGLNGRVWVNADSPST IVVSNAILNSETLSGVQQRIMVDKL  NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of CSPI01G01440 vs. ExPASy TrEMBL
Match: A0A6J1JLH7 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.6e-124
Identity = 228/243 (93.83%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISVSKVGKLRF+KP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFTKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIV+DSR+DNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
           LES GKKLSFETAVGLNGRVWVNADSPST IVVSNA+LNSETLSGVQQRIMVD L  NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of CSPI01G01440 vs. NCBI nr
Match: XP_004138110.1 (putative exosome complex component rrp40 isoform X1 [Cucumis sativus])

HSP 1 Score: 476.9 bits (1226), Expect = 1.1e-130
Identity = 242/243 (99.59%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
           LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLK
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of CSPI01G01440 vs. NCBI nr
Match: XP_008464560.1 (PREDICTED: putative exosome complex component rrp40 [Cucumis melo] >KAA0057849.1 putative exosome complex component rrp40 [Cucumis melo var. makuwa] >TYJ98532.1 putative exosome complex component rrp40 [Cucumis melo var. makuwa])

HSP 1 Score: 471.5 bits (1212), Expect = 4.5e-129
Identity = 238/243 (97.94%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
           LESLGKKLSFETA+GLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL ANLK
Sbjct: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of CSPI01G01440 vs. NCBI nr
Match: XP_038878675.1 (putative exosome complex component rrp40 [Benincasa hispida])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 232/243 (95.47%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVD PVVPGDVVLDLSNMANETIKLG GLRQDQD ISVSKVGKLR SKP
Sbjct: 1   MVEKPSSSSSTLVDHPVVPGDVVLDLSNMANETIKLGSGLRQDQDVISVSKVGKLRLSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSL FLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLGFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CP+
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPI 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
           LESLGKKLSFETAVGLNGRVWVNA+SPST IVVSNAILNSETLSGVQQRIMVDKL  NLK
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNAESPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of CSPI01G01440 vs. NCBI nr
Match: KAG6589448.1 (Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 459.5 bits (1181), Expect = 1.8e-125
Identity = 232/243 (95.47%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1    MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
            MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISVSKVGKLRFSKP
Sbjct: 786  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 845

Query: 61   NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
            NKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 846  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 905

Query: 121  EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
            EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPV
Sbjct: 906  EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 965

Query: 181  LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
            LES GKKLSFETAVGLNGRVWVNADSPST IVVSNAILNSETLSGVQQRIMVDKL  NLK
Sbjct: 966  LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 1025

Query: 241  LSS 244
            LSS
Sbjct: 1026 LSS 1028

[Close]

BLAST of CSPI01G01440 vs. NCBI nr
Match: KAG7023129.1 (putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 459.5 bits (1181), Expect = 1.8e-125
Identity = 232/243 (95.47%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHANLK 240
           LES GKKLSFETAVGLNGRVWVNADSPST IVVSNAILNSETLSGVQQRIMVDKL  NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of CSPI01G01440 vs. TAIR 10
Match: AT4G32175.1 (PNAS-3 related )

HSP 1 Score: 350.1 bits (897), Expect = 1.4e-96
Identity = 175/237 (73.84%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           M  K S S ++L++Q VVPGDVVLDLSNM N+TIKLG GL QD DAIS  + GKL +SKP
Sbjct: 1   MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYW+ESS KRY+P  +D VLGIV+DSRADNF VDIKGP LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180
           E+G LLY+RVVK N GMNPEL+CT+ASGKAA FG L+DG+MFE STGLSRMLL+SP+ PV
Sbjct: 121 EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV 180

Query: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLHA 238
           +E+LGKKLSFE AVGLNGRVWVNA +P  +I+V+NAI+NSE+LSG QQRIMV+KL A
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLLA 237

[Close]

BLAST of CSPI01G01440 vs. TAIR 10
Match: AT2G25355.1 (PNAS-3 related )

HSP 1 Score: 348.6 bits (893), Expect = 4.1e-96
Identity = 169/230 (73.48%), Postives = 195/230 (84.78%), Query Frame = 0


Query: 6   SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWV 65
           S+S ++L+DQ VVPGDVVLDLSNM N+TIKLG GLRQD + ISV + GKLR+SKPNKYWV
Sbjct: 6   STSPTSLIDQTVVPGDVVLDLSNMTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWV 65

Query: 66  ESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGAL 125
           ESS KRYVP  ED VLGIV+D + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  L
Sbjct: 66  ESSHKRYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTL 125

Query: 126 LYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLG 185
           LY RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLSSP+CPVLE+LG
Sbjct: 126 LYTRVVKTNTGMNPELSCVDESGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALG 185

Query: 186 KKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKL 236
           KKLSFETA GLNGR WV+A +P  +I+V+NA++NSETLSG QQRIMV+KL
Sbjct: 186 KKLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKL 235

[Close]

BLAST of CSPI01G01440 vs. TAIR 10
Match: AT2G25355.2 (PNAS-3 related )

HSP 1 Score: 317.0 bits (811), Expect = 1.3e-86
Identity = 152/207 (73.43%), Postives = 174/207 (84.06%), Query Frame = 0


Query: 29  MANETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSR 88
           M N+TIKLG GLRQD + ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIV+D +
Sbjct: 1   MTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCK 60

Query: 89  ADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASG 148
            +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D SG
Sbjct: 61  GENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESG 120

Query: 149 KAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVLESLGKKLSFETAVGLNGRVWVNADSPS 208
           KAAGFG LKDG+MFE STGLSRMLLSSP+CPVLE+LGKKLSFETA GLNGR WV+A +P 
Sbjct: 121 KAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKLSFETAFGLNGRCWVHAAAPR 180

Query: 209 TIIVVSNAILNSETLSGVQQRIMVDKL 236
            +I+V+NA++NSETLSG QQRIMV+KL
Sbjct: 181 IVIIVANALMNSETLSGTQQRIMVEKL 207

The following BLAST results are available for this feature:

BLAST of CSPI01G01440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7KWX9	2.2e-46	45.41	Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN...	[more]
Q8IPX7	6.9e-40	38.46	Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1...	[more]
Q3T0E1	9.3e-37	34.51	Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1	[more]
Q7TQK4	1.6e-36	39.51	Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3	[more]
Q9NQT5	6.1e-36	37.12	Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3	[more]

BLAST of CSPI01G01440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP58	5.2e-131	99.59	Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 P...	[more]
A0A5D3BFK9	2.2e-129	97.94	Ribosomal RNA-processing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CNB3	2.2e-129	97.94	Ribosomal RNA-processing protein 40 OS=Cucumis melo OX=3656 GN=LOC103502403 PE=3...	[more]
A0A6J1E1A1	1.5e-125	95.06	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11142988...	[more]
A0A6J1JLH7	3.6e-124	93.83	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 ...	[more]

BLAST of CSPI01G01440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138110.1	1.1e-130	99.59	putative exosome complex component rrp40 isoform X1 [Cucumis sativus]	[more]
XP_008464560.1	4.5e-129	97.94	PREDICTED: putative exosome complex component rrp40 [Cucumis melo] >KAA0057849.1...	[more]
XP_038878675.1	1.4e-125	95.47	putative exosome complex component rrp40 [Benincasa hispida]	[more]
KAG6589448.1	1.8e-125	95.47	Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7023129.1	1.8e-125	95.47	putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of CSPI01G01440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32175.1	1.4e-96	73.84	PNAS-3 related	[more]
AT2G25355.1	4.1e-96	73.48	PNAS-3 related	[more]
AT2G25355.2	1.3e-86	73.43	PNAS-3 related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 155..206 e-value: 5.1E-18 score: 66.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 158..202
None	No IPR available	GENE3D	2.40.50.140		coord: 78..154 e-value: 8.7E-25 score: 88.2
None	No IPR available	GENE3D	2.40.50.100		coord: 7..73 e-value: 1.6E-14 score: 55.8
None	No IPR available	PANTHER	PTHR21321:SF1	EXOSOME COMPLEX COMPONENT RRP40	coord: 11..202
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 9..70
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 159..202 e-value: 1.9E-15 score: 57.0
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 11..202
IPR037319	Rrp40, S1 domain	CDD	cd05790	S1_Rrp40	coord: 71..156 e-value: 7.42522E-39 score: 126.99
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 70..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G01440.1	CSPI01G01440.1	mRNA
CSPI01G01440.2	CSPI01G01440.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071034	CUT catabolic process
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding