CSPI01G00890 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G00890
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	Chr1: 534679 .. 536868 (-)
RNA-Seq Expression	CSPI01G00890
Synteny	CSPI01G00890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGAAAGAAGAAAGGCCATCTCTTTCTTCCCTGCTCCTTATCCTCAATTCCTCACCCCTCACCTCTTTGGGTGTTAAAGCCTTGTCCTCTAAAACCCTTCTTCTTCTTCTTCCTCTTCTATCTCTTCTATCTCTTCCTTTCGATTCAGTAATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCCGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTGAGCTTTAGTTACACTATTGCTGTCTGTTCTGTTTATGGATTTGGTTTAAGCTTTTAATCTGCTTGTGATTTGTAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGTAAGCTTCTGTAGACAAGATTCAGCCATATTTGAGTATCATGAATGAAACCTTATCTTCATTCTTGCTTTACAATGGAAGCATTTACTGCCAGTATATCTTTGCATTTAACCATTTCATTTTATTCTGAAGAGTTTAAATGGTCTGGTTTTCATGAATCTGAGGACTTGTTAGTGTAGGACTTAGCCATTAGGACGAAAGATGAATTTGTTCAATTTTCTTTCCGTGTGTAATTTTGAAATAAGTTATTTTTTAGTGTGTGGCTACCAGCTTTTAAAGCTTATTTTCTCTAGTCAATCCTTACATATCCATAGCTGTAATGATTGTTTGTTTGAATGTTTGATGATGAGATTGATTTTTCTATCTGGATAAGCTCTAGAGGCCATGTCCTTGTGTAGAATAGAGTATTTCCAATATATGTAATTGTTTGTTTTCTTTGTTTGAGATATCCCTTCACTTTTACTTGGTACTTTGTTTAAATTTTTCCATTCTCAGTTCTACCGAAAAATTTATGGGAATAAAATGTGCTTTTCTGGGTTTATAGGATTTATCTGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGTACAAAAACTTGAGTTTTCCTAATCACCTCATTGTCAAATTCAAATTGGTTTAACACTTCCTTCATGCCTCCAATAAGGAGAAGAGATTTACCAACTGCTTACAAAACATCTTGAAATTTGAAATGTGCAGAGTCTAGATGGAAGGGCAATCAGAGTAAATGTTGCTGAGGAAAGACCAAGGCGCAACTTCTGAGCCTAACCATGATGAATCCAAAAAAAAGCCCTTTTCTTCTTCTATTGTTCTATGTTCCTTTTTTTTCCTTTTTGTTTTCCCAGAAAGTATAGGTGAGTTTTGTAGTGCCATTGTTTAGCCACCTTATTACAGTGTAATTTTATTTCTTTTATGCTTCTAAAATTTCAAGTTTTCTATTATTTTGGATAATGTACGATTTCCAAGTTTCGTGCGATACCCTTCTTTAGTCCTTTTGATTTATCAATTAGAATTGTGTCAATGTTTTGATATGAATGGAGCAAATTGATTGAAA

mRNA sequence

TAAGAAAGAAGAAAGGCCATCTCTTTCTTCCCTGCTCCTTATCCTCAATTCCTCACCCCTCACCTCTTTGGGTGTTAAAGCCTTGTCCTCTAAAACCCTTCTTCTTCTTCTTCCTCTTCTATCTCTTCTATCTCTTCCTTTCGATTCAGTAATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCCGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGATTTATCTGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGATGGAAGGGCAATCAGAGTAAATGTTGCTGAGGAAAGACCAAGGCGCAACTTCTGAGCCTAACCATGATGAATCCAAAAAAAAGCCCTTTTCTTCTTCTATTGTTCTATGTTCCTTTTTTTTCCTTTTTGTTTTCCCAGAAAGTATAGGTGAGTTTTGTAGTGCCATTGTTTAGCCACCTTATTACAGTGTAATTTTATTTCTTTTATGCTTCTAAAATTTCAAGTTTTCTATTATTTTGGATAATGTACGATTTCCAAGTTTCGTGCGATACCCTTCTTTAGTCCTTTTGATTTATCAATTAGAATTGTGTCAATGTTTTGATATGAATGGAGCAAATTGATTGAAA

Coding sequence (CDS)

ATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCCGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGATTTATCTGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGATGGAAGGGCAATCAGAGTAAATGTTGCTGAGGAAAGACCAAGGCGCAACTTCTGA

Protein sequence

MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF*

Homology

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BLAST of CSPI01G00890 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-85
Identity = 191/347 (55.04%), Postives = 236/347 (68.01%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSL-------------------PSLFTGRPPHTFLSFPSK 60
           MASS  TS  KPL+  DS   ++                    SL TGR     ++ P  
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGR-----INLPLS 60

Query: 61  FIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPH 120
           F    LS  +      +  KK P +  VAQTSDWA+E    ++   ++  EN        
Sbjct: 61  FSRVSLSLKTK-----THLKKSPFVSFVAQTSDWAEEGGEGSV--AVEETENS------- 120

Query: 121 WENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPY 180
            E++++SE +    D        G E+E  GD  E    E+  + EP+E+AKLFVGNL Y
Sbjct: 121 LESQDVSEGDESEGDASEGDVSEGDESE--GDVSEGAVSERAEFPEPSEEAKLFVGNLAY 180

Query: 181 DIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGR 240
           D++S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AV+ FNRYDL+GR
Sbjct: 181 DVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 240

Query: 241 LLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDR 300
           LLTVNKAAPRGSR ER PR ++P FR+YVGNLPWDVDNGRLEQLFSEHGKVV+ARV+YDR
Sbjct: 241 LLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 300

Query: 301 DSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           ++GRSRGFGFVTM+D   +N+AI+ALDGQ+L+GRAIRVNVAEERP R
Sbjct: 301 ETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

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BLAST of CSPI01G00890 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.4e-82
Identity = 184/328 (56.10%), Postives = 221/328 (67.38%), Query Frame = 0


Query: 11  KPLSKP-----DSCFLSLPSLFTGRPPHTFLSFP---SKFIPFH-LSSSSSYSSGFSPSK 70
           KP+ KP     +SC +SLP LF         ++P   +   P   L  S +YS      K
Sbjct: 6   KPIIKPSSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSCTYSPCILSPK 65

Query: 71  KKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEG 130
           KK         S   +E++T+ +D +       G+E G  +  E   E        E  G
Sbjct: 66  KK------TSVSALQEEENTLILDGQ-------GQESGDLFNFEPSGEETEEEGFVEAVG 125

Query: 131 EDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIA 190
            D G   EV  DEEE+E      ++EP EDAKLFVGNLPYD+DSE LA LFE+AG VEIA
Sbjct: 126 -DAGESDEVEADEEEEE------FQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIA 185

Query: 191 EVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRP 250
           EVIYNR+TD+SRGFGFVTMSTVEEAEKAV+ +NRYD++GRLLTVNKAA RG R ER PR 
Sbjct: 186 EVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRT 245

Query: 251 FQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMN 310
           F+ ++RIYVGN+PW +D+ RLEQLFSEHGKVV ARV+YDR++GRSRGFGFVTMA E  M+
Sbjct: 246 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 305

Query: 311 DAIAALDGQSLDGRAIRVNVAEERPRRN 330
           DAIA LDGQSLDGR IRVNVAE+R RRN
Sbjct: 306 DAIANLDGQSLDGRTIRVNVAEDRSRRN 313

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BLAST of CSPI01G00890 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 3.8e-81
Identity = 174/313 (55.59%), Postives = 213/313 (68.05%), Query Frame = 0


Query: 17  DSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWA 76
           + C +SLP  FT     +   F S  +   +S SSS  +  S +K+    P+    S  +
Sbjct: 4   NGCLISLPPFFTTTKSISSYPFLSTQLK-PISLSSSLPTLLSLNKRTTQFPTF--VSVLS 63

Query: 77  QEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEE 136
           ++D+T+ +D                                  + E GG      G+  E
Sbjct: 64  EDDNTLVLD----------------------------------DQEQGGDFPSFVGEAGE 123

Query: 137 DEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFG 196
            EE     Y+EP+EDAKLFVGNLPYDIDSE LA LF++AG VEIAEVIYNRETDRSRGFG
Sbjct: 124 TEE-----YQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFG 183

Query: 197 FVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWD 256
           FVTMSTVEEA+KAV+ +++YDL+GRLLTVNKAAPRGSR ER PR FQPT+RIYVGN+PWD
Sbjct: 184 FVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWD 243

Query: 257 VDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRA 316
           +D+ RLEQ+FSEHGKVV ARV++DR+SGRSRGFGFVTM+ E  M++AIA LDGQ+LDGR 
Sbjct: 244 IDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRT 274

Query: 317 IRVNVAEERPRRN 330
           IRVN AEERPRRN
Sbjct: 304 IRVNAAEERPRRN 274

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BLAST of CSPI01G00890 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.0e-78
Identity = 168/263 (63.88%), Postives = 193/263 (73.38%), Query Frame = 0


Query: 69  VAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEGEDGGSEA 128
           VAQTS+W QE  T  +   L+ + +   EG   W                      GSE 
Sbjct: 2   VAQTSEWEQEGSTNAV---LEGESD--PEGAVSW----------------------GSET 61

Query: 129 EVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRE 188
           +V   +E   EG QG + EP E+AKLFVGNLPYD+DSEKLA +F+ AG VEIAEVIYNRE
Sbjct: 62  QV--SDEGGVEGGQG-FSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRE 121

Query: 189 TDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR-PFQPTFR 248
           TDRSRGFGFVTMSTVEEAEKAV+  N YD+ GR LTVNKAAPRGS  ER PR  F+P+ R
Sbjct: 122 TDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCR 181

Query: 249 IYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 308
           +YVGNLPWDVD  RLEQLFSEHGKVV ARV+ DR++GRSRGFGFVTM+ E+ +NDAIAAL
Sbjct: 182 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 233

Query: 309 DGQSLDGRAIRVNVAEERPRRNF 331
           DGQ+LDGRA+RVNVAEERPRR F
Sbjct: 242 DGQTLDGRAVRVNVAEERPRRAF 233

[Close]

BLAST of CSPI01G00890 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.6e-76
Identity = 165/288 (57.29%), Postives = 203/288 (70.49%), Query Frame = 0


Query: 45  FHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWEN 104
           F++SSS S+   FS S +  +L    ++         +T   +  N           W  
Sbjct: 30  FNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSN-----------WAE 89

Query: 105 EELSETESRISDWEGEGEDGGSEAEVGGDE---EEDEEGEQG-PYEEPNEDAKLFVGNLP 164
           EE             EGEDG     +GG     +E  E E G  + EP E+AKLFVGNLP
Sbjct: 90  EE-------------EGEDG----SIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLP 149

Query: 165 YDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSG 224
           YD+DS+ LAMLFE+AGTVEI+EVIYNR+TD+SRGFGFVTMSTVEEAEKAV+ FN ++++G
Sbjct: 150 YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNG 209

Query: 225 RLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYD 284
           R LTVN+AAPRGSR ER+PR +   FRIYVGNLPWDVD+GRLE+LFSEHGKVVDARV+ D
Sbjct: 210 RRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSD 269

Query: 285 RDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           R++GRSRGFGFV M++E  +N AIAALDGQ+L+GRAI+VNVAEER RR
Sbjct: 270 RETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of CSPI01G00890 vs. ExPASy TrEMBL
Match: A0A0A0LNS8 (Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1)

HSP 1 Score: 648.7 bits (1672), Expect = 1.3e-182
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS
Sbjct: 74  MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 133

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE
Sbjct: 134 KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 193

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 194 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 253

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR
Sbjct: 254 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 313

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 314 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 373

Query: 301 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           NDAIAALDGQSLDGRAIRVNVAEERPRRNF
Sbjct: 374 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 403

[Close]

BLAST of CSPI01G00890 vs. ExPASy TrEMBL
Match: A0A5D3BIH5 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00930 PE=4 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 1.1e-173
Identity = 314/330 (95.15%), Postives = 324/330 (98.18%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSS+SS F PS
Sbjct: 1   MASTSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKLDNDE+  EEGGPHWENEELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEE+EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 121 GEDGGSEAEVGGDEEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRG+RQER+PR
Sbjct: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQPR 240

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQP FRIYVGNLPWDVDN RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 241 PFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300

Query: 301 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           NDAIAALDGQSL+GRAIRVNVAEERPRRNF
Sbjct: 301 NDAIAALDGQSLEGRAIRVNVAEERPRRNF 330

[Close]

BLAST of CSPI01G00890 vs. ExPASy TrEMBL
Match: A0A5A7USX4 (Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00900 PE=4 SV=1)

HSP 1 Score: 606.3 bits (1562), Expect = 7.7e-170
Identity = 313/332 (94.28%), Postives = 322/332 (96.99%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATSLFK LSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSS+SS F PS
Sbjct: 1   MASTSATSLFKTLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDW--E 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKLDNDE+  EEGGPHWENEELSETESRISDW  E
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180
           GEGEDGGSEAEVGGDEEE EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV
Sbjct: 121 GEGEDGGSEAEVGGDEEE-EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180

Query: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQERE 240
           EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRG+RQER+
Sbjct: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQ 240

Query: 241 PRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300
           PRPFQP FRIYVGNLPWDVDN RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFVTMADET
Sbjct: 241 PRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300

Query: 301 GMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           GMNDAIAALDGQSL+GRAIRVNVAEERPRRNF
Sbjct: 301 GMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 331

[Close]

BLAST of CSPI01G00890 vs. ExPASy TrEMBL
Match: A0A6J1C316 (28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006981 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 6.5e-145
Identity = 281/338 (83.14%), Postives = 300/338 (88.76%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATS+ KPLSK DSC LSLPS+FT RPPH+FLSFPSK I FHL SSSS+SS FS S
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHL-SSSSHSSPFSLS 60

Query: 61  KKKPHLPS----VAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISD 120
           KKKPH  S    VAQTSDWAQEDDTITIDPKL  DE   +E GPHWEN+ELSETESRISD
Sbjct: 61  KKKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISD 120

Query: 121 WEGEGEDGGSEAEVGGDEE----EDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLF 180
           WEGE EDGGSEAE G D E    E+EE E+G YEEPNEDAKLFVGNLPYD+DS+KLAM+F
Sbjct: 121 WEGEAEDGGSEAE-GEDGEGGLLEEEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMIF 180

Query: 181 EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRG 240
            KAGTVEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRY+L GRLLTVNKAAPRG
Sbjct: 181 GKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPRG 240

Query: 241 SRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           +R ER PR FQ +FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARVLYDRD+GRSRGFGFV
Sbjct: 241 ARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGFV 300

Query: 301 TMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           TMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF
Sbjct: 301 TMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 336

[Close]

BLAST of CSPI01G00890 vs. ExPASy TrEMBL
Match: A0A6J1JFY1 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484771 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 7.2e-136
Identity = 270/339 (79.65%), Postives = 292/339 (86.14%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKF--IPFHLSSSSSYSSGFS 60
           MASSSATS+ KPLSK DSC LSLPSLFT RPPH+FLSFPSKF   PFHLSSS   SS FS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHC-SSLFS 60

Query: 61  PSKKKPHL----PSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRI 120
            SKKK HL     SVAQ+S+W QEDDTITIDPKL  DE+G  E GPHWEN+ELSE ESRI
Sbjct: 61  SSKKKTHLLSLVASVAQSSEWGQEDDTITIDPKLSGDEDG--EEGPHWENQELSENESRI 120

Query: 121 SDWEGEGE---DGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAML 180
           SDWEGEGE   DGGSE E GG  E  +E E+GP EEPNEDAKL+VGNL YD+DS+KLAML
Sbjct: 121 SDWEGEGEGEDDGGSEGEGGGVLELGDE-EEGPLEEPNEDAKLYVGNLSYDVDSQKLAML 180

Query: 181 FEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPR 240
           FEKAGTVEIAEVIY+R++DRSRGFGFVTMS+VEEAEKAVDTFNRY+  GR L VNKAA R
Sbjct: 181 FEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAAR 240

Query: 241 GSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGF 300
           GSR ER+PR FQP FRIYVGNL W+VD+ RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGF
Sbjct: 241 GSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGF 300

Query: 301 VTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           VTMADETGMNDAIAALDGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 301 VTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: XP_004138078.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8652388.1 hypothetical protein Csa_013384 [Cucumis sativus])

HSP 1 Score: 648.7 bits (1672), Expect = 2.8e-182
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS
Sbjct: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR
Sbjct: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300

Query: 301 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           NDAIAALDGQSLDGRAIRVNVAEERPRRNF
Sbjct: 301 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 330

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: TYJ98491.1 (28 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 619.0 bits (1595), Expect = 2.4e-173
Identity = 314/330 (95.15%), Postives = 324/330 (98.18%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSS+SS F PS
Sbjct: 1   MASTSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKLDNDE+  EEGGPHWENEELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEE+EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 121 GEDGGSEAEVGGDEEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRG+RQER+PR
Sbjct: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQPR 240

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQP FRIYVGNLPWDVDN RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 241 PFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300

Query: 301 NDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           NDAIAALDGQSL+GRAIRVNVAEERPRRNF
Sbjct: 301 NDAIAALDGQSLEGRAIRVNVAEERPRRNF 330

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: KAA0057807.1 (Ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 606.3 bits (1562), Expect = 1.6e-169
Identity = 313/332 (94.28%), Postives = 322/332 (96.99%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATSLFK LSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSS+SS F PS
Sbjct: 1   MASTSATSLFKTLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDW--E 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKLDNDE+  EEGGPHWENEELSETESRISDW  E
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180
           GEGEDGGSEAEVGGDEEE EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV
Sbjct: 121 GEGEDGGSEAEVGGDEEE-EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180

Query: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQERE 240
           EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRG+RQER+
Sbjct: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQ 240

Query: 241 PRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300
           PRPFQP FRIYVGNLPWDVDN RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFVTMADET
Sbjct: 241 PRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300

Query: 301 GMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           GMNDAIAALDGQSL+GRAIRVNVAEERPRRNF
Sbjct: 301 GMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 331

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: XP_038878997.1 (28 kDa ribonucleoprotein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 546.2 bits (1406), Expect = 1.9e-151
Identity = 290/333 (87.09%), Postives = 305/333 (91.59%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATS+ KPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPF+L  SSS++S FS S
Sbjct: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNL--SSSHTSLFSSS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKK HLPSVAQTSDWAQEDDTITIDPKL +DE    E GPHWEN+ELSETESRISDWEGE
Sbjct: 61  KKKTHLPSVAQTSDWAQEDDTITIDPKLGDDE--AAEEGPHWENQELSETESRISDWEGE 120

Query: 121 GE---DGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGT 180
            E   DGGSEAE  GDEEE      GPYEEPNEDAKLFVGNLPYD+DS+KLAMLFEKAGT
Sbjct: 121 AEGEDDGGSEAE--GDEEE------GPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGT 180

Query: 181 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQER 240
           VEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRGSR ER
Sbjct: 181 VEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPER 240

Query: 241 EPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADE 300
           +PR FQP FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARVLYDRDSGRSRGFGFVTMADE
Sbjct: 241 QPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADE 300

Query: 301 TGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           TGMNDAIAALDGQSL+GRAIRVNVAEERPRRNF
Sbjct: 301 TGMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 321

[Close]

BLAST of CSPI01G00890 vs. NCBI nr
Match: XP_022134798.1 (28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia])

HSP 1 Score: 523.5 bits (1347), Expect = 1.4e-144
Identity = 281/338 (83.14%), Postives = 300/338 (88.76%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATS+ KPLSK DSC LSLPS+FT RPPH+FLSFPSK I FHL SSSS+SS FS S
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHL-SSSSHSSPFSLS 60

Query: 61  KKKPHLPS----VAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISD 120
           KKKPH  S    VAQTSDWAQEDDTITIDPKL  DE   +E GPHWEN+ELSETESRISD
Sbjct: 61  KKKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISD 120

Query: 121 WEGEGEDGGSEAEVGGDEE----EDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLF 180
           WEGE EDGGSEAE G D E    E+EE E+G YEEPNEDAKLFVGNLPYD+DS+KLAM+F
Sbjct: 121 WEGEAEDGGSEAE-GEDGEGGLLEEEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMIF 180

Query: 181 EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRG 240
            KAGTVEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRY+L GRLLTVNKAAPRG
Sbjct: 181 GKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPRG 240

Query: 241 SRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           +R ER PR FQ +FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARVLYDRD+GRSRGFGFV
Sbjct: 241 ARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGFV 300

Query: 301 TMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 331
           TMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF
Sbjct: 301 TMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 336

[Close]

BLAST of CSPI01G00890 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 317.4 bits (812), Expect = 1.4e-86
Identity = 191/347 (55.04%), Postives = 236/347 (68.01%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSL-------------------PSLFTGRPPHTFLSFPSK 60
           MASS  TS  KPL+  DS   ++                    SL TGR     ++ P  
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGR-----INLPLS 60

Query: 61  FIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPH 120
           F    LS  +      +  KK P +  VAQTSDWA+E    ++   ++  EN        
Sbjct: 61  FSRVSLSLKTK-----THLKKSPFVSFVAQTSDWAEEGGEGSV--AVEETENS------- 120

Query: 121 WENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPY 180
            E++++SE +    D        G E+E  GD  E    E+  + EP+E+AKLFVGNL Y
Sbjct: 121 LESQDVSEGDESEGDASEGDVSEGDESE--GDVSEGAVSERAEFPEPSEEAKLFVGNLAY 180

Query: 181 DIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGR 240
           D++S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AV+ FNRYDL+GR
Sbjct: 181 DVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 240

Query: 241 LLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDR 300
           LLTVNKAAPRGSR ER PR ++P FR+YVGNLPWDVDNGRLEQLFSEHGKVV+ARV+YDR
Sbjct: 241 LLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 300

Query: 301 DSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           ++GRSRGFGFVTM+D   +N+AI+ALDGQ+L+GRAIRVNVAEERP R
Sbjct: 301 ETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]

BLAST of CSPI01G00890 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-77
Identity = 165/288 (57.29%), Postives = 203/288 (70.49%), Query Frame = 0


Query: 45  FHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWEN 104
           F++SSS S+   FS S +  +L    ++         +T   +  N           W  
Sbjct: 30  FNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSN-----------WAE 89

Query: 105 EELSETESRISDWEGEGEDGGSEAEVGGDE---EEDEEGEQG-PYEEPNEDAKLFVGNLP 164
           EE             EGEDG     +GG     +E  E E G  + EP E+AKLFVGNLP
Sbjct: 90  EE-------------EGEDG----SIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLP 149

Query: 165 YDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSG 224
           YD+DS+ LAMLFE+AGTVEI+EVIYNR+TD+SRGFGFVTMSTVEEAEKAV+ FN ++++G
Sbjct: 150 YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNG 209

Query: 225 RLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYD 284
           R LTVN+AAPRGSR ER+PR +   FRIYVGNLPWDVD+GRLE+LFSEHGKVVDARV+ D
Sbjct: 210 RRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSD 269

Query: 285 RDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           R++GRSRGFGFV M++E  +N AIAALDGQ+L+GRAI+VNVAEER RR
Sbjct: 270 RETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of CSPI01G00890 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 195.3 bits (495), Expect = 7.9e-50
Identity = 115/224 (51.34%), Postives = 140/224 (62.50%), Query Frame = 0


Query: 126 SEAEVGGDEEEDEEGEQGPYEEP--NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEV 185
           SE EV    EED   +  P +E   + D KLFVGNLP+++DS +LA LFE AG VE+ EV
Sbjct: 67  SEFEV----EEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV 126

Query: 186 IYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQ 245
           IY++ T RSRGFGFVTMS+V E E A   FN Y+L GR L VN   P   R++   R  +
Sbjct: 127 IYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPR 186

Query: 246 PTF-------------------RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSG 305
            +F                   R+YVGNL W VD+  LE LFSE GKVV+ARV+YDRDSG
Sbjct: 187 SSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSG 246

Query: 306 RSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRR 329
           RS+GFGFVT      + +AI +LDG  LDGR IRV+ AE RP R
Sbjct: 247 RSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286

[Close]

BLAST of CSPI01G00890 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 166.8 bits (421), Expect = 3.0e-41
Identity = 110/269 (40.89%), Postives = 136/269 (50.56%), Query Frame = 0


Query: 126 SEAEVGGDEEEDEEGEQGPYEEP--NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEV 185
           S+ EV  D+   +  +  P E    + D KLFVGNL +++DS +LA LFE AG VE+ EV
Sbjct: 71  SDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 130

Query: 186 IYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQE---REPR 245
           IY++ T RSRGFGFVTMST  E E A   FN Y+  GR L VN   P   R+E   R PR
Sbjct: 131 IYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190

Query: 246 P----------------------------------------------------------- 305
                                                                       
Sbjct: 191 SGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSG 250

Query: 306 --FQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETG 329
                  R+YVGNL W VD+  LE LF+E GKVV+ARV+YDRDSGRS+GFGFVT++    
Sbjct: 251 SGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQE 310

[Close]

BLAST of CSPI01G00890 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 166.8 bits (421), Expect = 3.0e-41
Identity = 110/269 (40.89%), Postives = 136/269 (50.56%), Query Frame = 0


Query: 126 SEAEVGGDEEEDEEGEQGPYEEP--NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEV 185
           S+ EV  D+   +  +  P E    + D KLFVGNL +++DS +LA LFE AG VE+ EV
Sbjct: 71  SDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 130

Query: 186 IYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQE---REPR 245
           IY++ T RSRGFGFVTMST  E E A   FN Y+  GR L VN   P   R+E   R PR
Sbjct: 131 IYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190

Query: 246 P----------------------------------------------------------- 305
                                                                       
Sbjct: 191 SGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSG 250

Query: 306 --FQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETG 329
                  R+YVGNL W VD+  LE LF+E GKVV+ARV+YDRDSGRS+GFGFVT++    
Sbjct: 251 SGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQE 310

The following BLAST results are available for this feature:

BLAST of CSPI01G00890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04836	1.9e-85	55.04	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
P19683	3.4e-82	56.10	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19682	3.8e-81	55.59	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P28644	1.0e-78	63.88	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
Q9FGS0	1.6e-76	57.29	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]

BLAST of CSPI01G00890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNS8	1.3e-182	100.00	Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1	[more]
A0A5D3BIH5	1.1e-173	95.15	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7USX4	7.7e-170	94.28	Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00...	[more]
A0A6J1C316	6.5e-145	83.14	28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1JFY1	7.2e-136	79.65	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CSPI01G00890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138078.1	2.8e-182	100.00	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8652388.1 hypothet...	[more]
TYJ98491.1	2.4e-173	95.15	28 kDa ribonucleoprotein [Cucumis melo var. makuwa]	[more]
KAA0057807.1	1.6e-169	94.28	Ribonucleoprotein [Cucumis melo var. makuwa]	[more]
XP_038878997.1	1.9e-151	87.09	28 kDa ribonucleoprotein, chloroplastic-like [Benincasa hispida]	[more]
XP_022134798.1	1.4e-144	83.14	28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia]	[more]

BLAST of CSPI01G00890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24770.1	1.4e-86	55.04	31-kDa RNA binding protein	[more]
AT5G50250.1	1.2e-77	57.29	chloroplast RNA-binding protein 31B	[more]
AT2G37220.1	7.9e-50	51.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	3.0e-41	40.89	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	3.0e-41	40.89	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 247..320 e-value: 1.0E-28 score: 111.4 coord: 153..226 e-value: 1.4E-25 score: 101.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 248..318 e-value: 8.1E-21 score: 73.6 coord: 154..223 e-value: 3.9E-20 score: 71.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 152..230 score: 18.54678
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 246..324 score: 20.201155
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 236..330 e-value: 9.6E-30 score: 105.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 84..235 e-value: 6.0E-29 score: 103.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..145
None	No IPR available	PANTHER	PTHR48025:SF8	RIBONUCLEOPROTEIN	coord: 1..329
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..329
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 153..230 e-value: 4.4326E-35 score: 120.796
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 247..323 e-value: 3.11995E-35 score: 121.181
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 240..328
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 147..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G00890.1	CSPI01G00890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding