BhiUN533G12 (gene) Wax gourd (B227) v1

Overview
NameBhiUN533G12
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRibosomal protein S3
LocationContig533: 256457 .. 256864 (-)
RNA-Seq ExpressionBhiUN533G12
SyntenyBhiUN533G12
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCGACACGGAAAAGAAGACTTTCGAGAACAAATATTGGACCGGGAAAAAAAGGGGGATAAAGTCAAGTCTAAGCGCATATGGCACGAAAAGGAAATCATTTCGGTAAAACTTGATCTGAATCGTAGTTCAGATTCAAGTCGTTCAGTGAGGGCGACCGCGAAAGTCAGAATGGGTCAGGCTTTTCCTTCAGTTTTTCCTATATTGAAAATAAAAAAGCGTGGGAGGACATTGCGGATGTCCAGGACGGACCAGACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCGGGACCAGAGCAGTCGTGAAAGAAGCACACTGGGCGTGCTTCGACCGTGTCTCCGGCGAAGTTGAATGTAGATATCAATAG

mRNA sequence

ATGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCGACACGGAAAAGAAGACTTTCGAGAACAAATATTGGACCGGGAAAAAAAGGGGGATAAAGTCAAGTCTAAGCGCATATGGCACGAAAAGGAAATCATTTCGGTAAAACTTGATCTGAATCGTAGTTCAGATTCAAGTCGTTCAGTGAGGGCGACCGCGAAAGTCAGAATGGGTCAGGCTTTTCCTTCAGTTTTTCCTATATTGAAAATAAAAAAGCGTGGGAGGACATTGCGGATGTCCAGGACGGACCAGACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCGGGACCAGAGCAGTCGTGAAAGAAGCACACTGGGCGTGCTTCGACCGTGTCTCCGGCGAAGTTGAATGTAGATATCAATAG

Coding sequence (CDS)

ATGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCGACACGGAAAAGAAGACTTTCGAGAACAAATATTGGACCGGGAAAAAAAGGGGGATAAAGTCAAGTCTAAGCGCATATGGCACGAAAAGGAAATCATTTCGGTAAAACTTGATCTGAATCGTAGTTCAGATTCAAGTCGTTCAGTGAGGGCGACCGCGAAAGTCAGAATGGGTCAGGCTTTTCCTTCAGTTTTTCCTATATTGAAAATAAAAAAGCGTGGGAGGACATTGCGGATGTCCAGGACGGACCAGACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCGGGACCAGAGCAGTCGTGAAAGAAGCACACTGGGCGTGCTTCGACCGTGTCTCCGGCGAAGTTGAATGTAGATATCAATAG

Protein sequence

MKEGLVINLESLLRHGKEDFREQILDREKKGDKVKSKRIWHEKEIISVKLDLNRSSDSSRSVRATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARRPLEDTGTRAVVKEAHWACFDRVSGEVECRYQ
Homology
BLAST of BhiUN533G12 vs. NCBI nr
Match: BBB05353.1 (ORF142 protein [Turritis glabra])

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-12
Identity = 60/112 (53.57%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 5   LVINLESLLRHGKEDFREQILDREKKGDK-VKSKRIWHEKEIISVKLDLNRSSDSSR-SV 64
           LVINLES  +      R  I    KKG K +KSK +  +   ISV+L  NRSSDSSR S 
Sbjct: 33  LVINLESTRKLRLS--RTNIGPGRKKGQKSIKSKNMARKGNPISVRLGKNRSSDSSRFSE 92

Query: 65  RATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARRPLEDTGTRAV 115
                 RMG++FPSV+PI   KKRGRTL+MS TD TSSNARRPLE+T  +++
Sbjct: 93  GDRESHRMGKSFPSVYPIFS-KKRGRTLQMSGTDTTSSNARRPLENTRNQSM 141

BLAST of BhiUN533G12 vs. NCBI nr
Match: OAO89239.1 (hypothetical protein AXX17_ATUG02800 [Arabidopsis thaliana])

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-09
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 0

Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARR 105
           ISV+L  NRSSDSSR S       RMG++FPSV+PI   KKRGRTL+MS TD TSSNARR
Sbjct: 8   ISVRLGKNRSSDSSRFSEGDRESHRMGKSFPSVYPIFS-KKRGRTLQMSGTDTTSSNARR 67

Query: 106 PLEDTGTRAV 115
           PLE+T  +++
Sbjct: 68  PLENTRNQSM 76

BLAST of BhiUN533G12 vs. NCBI nr
Match: KAF8050114.1 (hypothetical protein N665_2042s0006 [Sinapis alba])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARR 105
           ISV+L  NRSSDSSR S       RMG++FPSV+PI   KKRGR L+MS TD TSSNARR
Sbjct: 8   ISVRLGKNRSSDSSRFSEGDRESHRMGKSFPSVYPIFS-KKRGRRLQMSGTDTTSSNARR 67

Query: 106 PLEDTGTRAV 115
           PLE+T  +++
Sbjct: 68  PLENTRNQSM 76

BLAST of BhiUN533G12 vs. NCBI nr
Match: KAF3774432.1 (Ribosomal protein S19 [Nymphaea thermarum])

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-08
Identity = 50/107 (46.73%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 29  KKGDKVKSKRIWHEK-EIISVKLDLNRSSDSSRSVRATAKVRMGQAFPSVFPILKIKKRG 88
           KKG+KVKSKR    K   ISV+LDLNRSSDSSR      +      + +       ++RG
Sbjct: 107 KKGEKVKSKRHMARKGNPISVRLDLNRSSDSSRFSEGDRESHRRVLYSN-------RRRG 166

Query: 89  RTLRMSRTDQTSSNARRPLEDTGTRAVVKEAHWACFDRVSGEVECRY 135
           RTL+MS TD TSSNARRP EDT   ++       C   + G VEC Y
Sbjct: 167 RTLQMSGTDTTSSNARRPQEDTRDLSMSAGVLRPC---LRGTVECFY 203

BLAST of BhiUN533G12 vs. NCBI nr
Match: YP_009242005.1 (ribosomal protein S3 [Oryza minuta] >AMQ23369.1 ribosomal protein S3 [Oryza minuta])

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQA-FPSVFPILKIKKRGRTLRMSRTDQTSSNAR 105
           ISV+LDLNRSSD SR S       RMG      +F     K+R RTL+MS TD TSSNAR
Sbjct: 8   ISVRLDLNRSSDPSRFSEGDRESHRMGSVRLFLIFVCPPKKRRERTLQMSGTDTTSSNAR 67

Query: 106 RPLEDTGTRAVVKEAHW--ACFDRVSG 129
           RP E+T  +++  + H   ACFDRVSG
Sbjct: 68  RPQEETRDQSMSSKTHTGRACFDRVSG 94

BLAST of BhiUN533G12 vs. ExPASy TrEMBL
Match: A0A5H2V7Y2 (ORF142 protein OS=Turritis glabra OX=63678 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.7e-12
Identity = 60/112 (53.57%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 5   LVINLESLLRHGKEDFREQILDREKKGDK-VKSKRIWHEKEIISVKLDLNRSSDSSR-SV 64
           LVINLES  +      R  I    KKG K +KSK +  +   ISV+L  NRSSDSSR S 
Sbjct: 33  LVINLESTRKLRLS--RTNIGPGRKKGQKSIKSKNMARKGNPISVRLGKNRSSDSSRFSE 92

Query: 65  RATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARRPLEDTGTRAV 115
                 RMG++FPSV+PI   KKRGRTL+MS TD TSSNARRPLE+T  +++
Sbjct: 93  GDRESHRMGKSFPSVYPIFS-KKRGRTLQMSGTDTTSSNARRPLENTRNQSM 141

BLAST of BhiUN533G12 vs. ExPASy TrEMBL
Match: A0A178U6G4 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_ATUG02800 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 0

Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARR 105
           ISV+L  NRSSDSSR S       RMG++FPSV+PI   KKRGRTL+MS TD TSSNARR
Sbjct: 8   ISVRLGKNRSSDSSRFSEGDRESHRMGKSFPSVYPIFS-KKRGRTLQMSGTDTTSSNARR 67

Query: 106 PLEDTGTRAV 115
           PLE+T  +++
Sbjct: 68  PLENTRNQSM 76

BLAST of BhiUN533G12 vs. ExPASy TrEMBL
Match: A0A141NB76 (Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.8e-08
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQA-FPSVFPILKIKKRGRTLRMSRTDQTSSNAR 105
           ISV+LDLNRSSD SR S       RMG      +F     K+R RTL+MS TD TSSNAR
Sbjct: 8   ISVRLDLNRSSDPSRFSEGDRESHRMGSVRLFLIFVCPPKKRRERTLQMSGTDTTSSNAR 67

Query: 106 RPLEDTGTRAVVKEAHW--ACFDRVSG 129
           RP E+T  +++  + H   ACFDRVSG
Sbjct: 68  RPQEETRDQSMSSKTHTGRACFDRVSG 94

BLAST of BhiUN533G12 vs. ExPASy TrEMBL
Match: A0A142D7W9 (Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.8e-08
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 46  ISVKLDLNRSSDSSR-SVRATAKVRMGQA-FPSVFPILKIKKRGRTLRMSRTDQTSSNAR 105
           ISV+LDLNRSSD SR S       RMG      +F     K+R RTL+MS TD TSSNAR
Sbjct: 8   ISVRLDLNRSSDPSRFSEGDRESHRMGSVRLFLIFVCPPKKRRERTLQMSGTDTTSSNAR 67

Query: 106 RPLEDTGTRAVVKEAHW--ACFDRVSG 129
           RP E+T  +++  + H   ACFDRVSG
Sbjct: 68  RPQEETRDQSMSSKTHTGRACFDRVSG 94

BLAST of BhiUN533G12 vs. ExPASy TrEMBL
Match: A0A2G2Z6K0 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_15680 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 46  ISVKLDLNRSSDSSRSVRATAKV-RMGQAFPSVFPILKIKKRGRTLRMSRTDQTSSNARR 105
           ISV+LDLNRSSDSS  + A  ++ RMGQ+F S  P L+ +K  RTL+M   D TSS ARR
Sbjct: 8   ISVRLDLNRSSDSSWYIEADHEIHRMGQSFSS--PRLEYQK--RTLQMPGADTTSSKARR 67

Query: 106 PLEDT 110
           P+EDT
Sbjct: 68  PMEDT 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
BBB05353.15.5e-1253.57ORF142 protein [Turritis glabra][more]
OAO89239.12.6e-0962.86hypothetical protein AXX17_ATUG02800 [Arabidopsis thaliana][more]
KAF8050114.11.3e-0861.43hypothetical protein N665_2042s0006 [Sinapis alba][more]
KAF3774432.16.3e-0846.73Ribosomal protein S19 [Nymphaea thermarum][more]
YP_009242005.11.4e-0752.87ribosomal protein S3 [Oryza minuta] >AMQ23369.1 ribosomal protein S3 [Oryza minu... [more]
Match NameE-valueIdentityDescription
A0A5H2V7Y22.7e-1253.57ORF142 protein OS=Turritis glabra OX=63678 PE=4 SV=1[more]
A0A178U6G41.2e-0962.86Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_ATUG02800 PE=4 ... [more]
A0A141NB766.8e-0852.87Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=3 SV=1[more]
A0A142D7W96.8e-0852.87Ribosomal protein S3 OS=Oryza minuta OX=63629 GN=rps3 PE=4 SV=1[more]
A0A2G2Z6K04.1e-0558.46Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_15680 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
BhiUN533M12BhiUN533M12mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0043229 intracellular organelle