BhiUN297G7 (gene) Wax gourd (B227) v1

Overview


Name	BhiUN297G7
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotransposable element Tf2
Location	Contig297: 115678 .. 116139 (+)
RNA-Seq Expression	BhiUN297G7
Synteny	BhiUN297G7

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCTCCATTCTCAATTTAGATTCACACTATACTTTCAAATTCCGTGGATCTTTTGTTGGAATTTCCAACTAGGACCATATGGAAACTTCAAAGCCCTAAGCAAGACATTAAGAATCAAATGGTGGGAAAAGTATGATTACACCCACCTAAAAGCGTCAAAGTTAAAGGATTGGTTCAAAGCCAATGTTCATCTACAGGACTTATCTCGCCAAGAAGATGAACAATTCACTTTGACCAAGAATTCAATTATGAGTTCTCTAGTTGGAGCAAGATCACATGCTGATTTTACTTCAGTACTTAATACAGTTGTTAGGCAATTATCAGACCCTGACGAAACTCAAGAAGATGCAAATTCTTCTGCATATGTGAACAATGAAGTCGAAGATGACGAAGATGACTATGACCCCTTCGCAGATTACGACATCAATGACCCGTTTTTAGACTCACAATCAAATTAA

mRNA sequence

ATGTGTCTCCATTCTCAATTTAGATTCACACTATACTTTCAAATTCCGTGGATCTTTTGTTGGAATTTCCAACTAGGACCATATGGAAACTTCAAAGCCCTAAGCAAGACATTAAGAATCAAATGGTGGGAAAAGTATGATTACACCCACCTAAAAGCGTCAAAGTTAAAGGATTGGTTCAAAGCCAATGTTCATCTACAGGACTTATCTCGCCAAGAAGATGAACAATTCACTTTGACCAAGAATTCAATTATGAGTTCTCTAGTTGGAGCAAGATCACATGCTGATTTTACTTCAGTACTTAATACAGTTGTTAGGCAATTATCAGACCCTGACGAAACTCAAGAAGATGCAAATTCTTCTGCATATGTGAACAATGAAGTCGAAGATGACGAAGATGACTATGACCCCTTCGCAGATTACGACATCAATGACCCGTTTTTAGACTCACAATCAAATTAA

Coding sequence (CDS)

ATGTGTCTCCATTCTCAATTTAGATTCACACTATACTTTCAAATTCCGTGGATCTTTTGTTGGAATTTCCAACTAGGACCATATGGAAACTTCAAAGCCCTAAGCAAGACATTAAGAATCAAATGGTGGGAAAAGTATGATTACACCCACCTAAAAGCGTCAAAGTTAAAGGATTGGTTCAAAGCCAATGTTCATCTACAGGACTTATCTCGCCAAGAAGATGAACAATTCACTTTGACCAAGAATTCAATTATGAGTTCTCTAGTTGGAGCAAGATCACATGCTGATTTTACTTCAGTACTTAATACAGTTGTTAGGCAATTATCAGACCCTGACGAAACTCAAGAAGATGCAAATTCTTCTGCATATGTGAACAATGAAGTCGAAGATGACGAAGATGACTATGACCCCTTCGCAGATTACGACATCAATGACCCGTTTTTAGACTCACAATCAAATTAA

Protein sequence

MCLHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKANVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSAYVNNEVEDDEDDYDPFADYDINDPFLDSQSN

Homology

[Close]

BLAST of BhiUN297G7 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 6.6e-46
Identity = 95/149 (63.76%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+LRIKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VNN    D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVNNA---DDFDYDPYEGLDINDPFLDTQ 417

[Close]

BLAST of BhiUN297G7 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 8.7e-46
Identity = 95/149 (63.76%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+LRIKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VNN    D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVNNV---DDFDYDPYEGLDINDPFLDTQ 417

[Close]

BLAST of BhiUN297G7 vs. NCBI nr
Match: KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-45
Identity = 95/149 (63.76%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+LRIKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VNN    D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVNNV---DDLDYDPYEGLDINDPFLDTQ 417

[Close]

BLAST of BhiUN297G7 vs. NCBI nr
Match: KAA0032923.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 2.1e-44
Identity = 93/149 (62.42%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+L IKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VN   + D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVN---DVDDLDYDPYVGLDINDPFLDTQ 417

[Close]

BLAST of BhiUN297G7 vs. NCBI nr
Match: TYK28077.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.8e-44
Identity = 93/149 (62.42%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+L IKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VN   + D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVN---DVDDLDYDPYEGLDINDPFLDTQ 417

[Close]

BLAST of BhiUN297G7 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.2e-46
Identity = 95/149 (63.76%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+LRIKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VNN    D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVNNA---DDFDYDPYEGLDINDPFLDTQ 417

[Close]

BLAST of BhiUN297G7 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 4.2e-46
Identity = 95/149 (63.76%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+LRIKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VNN    D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVNNV---DDFDYDPYEGLDINDPFLDTQ 417

[Close]

BLAST of BhiUN297G7 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.5e-46
Identity = 95/149 (63.76%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+LRIKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VNN    D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVNNV---DDLDYDPYEGLDINDPFLDTQ 417

[Close]

BLAST of BhiUN297G7 vs. ExPASy TrEMBL
Match: A0A5A7SR64 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.0e-44
Identity = 93/149 (62.42%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+L IKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VN   + D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVN---DVDDLDYDPYVGLDINDPFLDTQ 417

[Close]

BLAST of BhiUN297G7 vs. ExPASy TrEMBL
Match: A0A5D3DW87 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.4e-44
Identity = 93/149 (62.42%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 3   LHSQFRFTLYFQIPWIFCWNFQLGPYGNFKALSKTLRIKWWEKYDYTHLKASKLKDWFKA 62
           L   FRF LYFQIPWIFCWNFQLGP GNFKALSK+L IKWWEK++Y+HL+ +K+KDWFKA
Sbjct: 272 LSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKA 331

Query: 63  NVHLQDLSRQEDEQFTLTKNSIMSSLVGARSHADFTSVLNTVVRQLSDPDETQEDANSSA 122
           N+HLQD++RQEDE F LTKN++MS+L GA +  +F SV+N VV  LSD ++   +  S A
Sbjct: 332 NIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPA 391

Query: 123 YVNNEVEDDEDDYDPFADYDINDPFLDSQ 152
            VN   + D+ DYDP+   DINDPFLD+Q
Sbjct: 392 SVN---DVDDLDYDPYEGLDINDPFLDTQ 417

The following BLAST results are available for this feature:

BLAST of BhiUN297G7 vs.


Match Name	E-value	Identity	Description

BLAST of BhiUN297G7 vs.


Match Name	E-value	Identity	Description

BLAST of BhiUN297G7 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063832.1	6.6e-46	63.76	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0056777.1	8.7e-46	63.76	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
KAA0068172.1	1.1e-45	63.76	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0032923.1	2.1e-44	62.42	polyprotein [Cucumis melo var. makuwa]	[more]
TYK28077.1	2.8e-44	62.42	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of BhiUN297G7 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6D1	3.2e-46	63.76	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVN1	4.2e-46	63.76	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VIK9	5.5e-46	63.76	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SR64	1.0e-44	62.42	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE...	[more]
A0A5D3DW87	1.4e-44	62.42	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN297M7	BhiUN297M7	mRNA