BhiUN297G12 (gene) Wax gourd (B227) v1

Overview


Name	BhiUN297G12
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Reverse transcriptase domain-containing protein
Location	Contig297: 233910 .. 234362 (+)
RNA-Seq Expression	BhiUN297G12
Synteny	BhiUN297G12

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCACAACCCAACCAGACCCTCAAACACCTCTACCCCCACCGAACCTCCTGCCCAAAGAGAACCCAATCACGAATACCTAGCATGGACTTACCACGATTAAGGCCTCATCACTCTTATCAACGTCATCCTATCCATTTCTGTTTTCTCCCATGTAACCTCGGTATCCACCGATCGGGAACTCTGGCTATCTTTCGAAAAGCGTTATTCTTTCAAAACCCGTGCGAATATTTTAGAGCTTCGTTTAGAACTCTACAATGCAAAAAATCAACTACAGAATCCATCGAGCAATACACATGGCGTGTCAAGGATATCGTTGATCAACTAGTTGCGACCTTGGTTACCGTTGATGATGAAGAGACGGTCCTCCACATTCTAAATGGCTTGCCATCTGATTATAGCTCATTCTGCACCTCTCTTCAAACTCGCAATACACAAGAGTACATTTGA

mRNA sequence

ATGGATTCACAACCCAACCAGACCCTCAAACACCTCTACCCCCACCGAACCTCCTGCCCAAAGAGAACCCAATCACGAATACCTAGCATGGACTTACCACGATTAAGGCCTCATCACTCTTATCAACGTCATCCTATCCATTTCTGTTTTCTCCCATGTAACCTCGGTATCCACCGATCGGGAACTCTGGCTATCTTTCGAAAAGCGTTATTCTTTCAAAACCCGTGCGAATATTTTAGAGCTTCGTTTAGAACTCTACAATGCAAAAAATCAACTACAGAATCCATCGAGCAATACACATGGCGTGTCAAGGATATCGTTGATCAACTAGTTGCGACCTTGGTTACCGTTGATGATGAAGAGACGGTCCTCCACATTCTAAATGGCTTGCCATCTGATTATAGCTCATTCTGCACCTCTCTTCAAACTCGCAATACACAAGAGTACATTTGA

Coding sequence (CDS)

ATGGATTCACAACCCAACCAGACCCTCAAACACCTCTACCCCCACCGAACCTCCTGCCCAAAGAGAACCCAATCACGAATACCTAGCATGGACTTACCACGATTAAGGCCTCATCACTCTTATCAACGTCATCCTATCCATTTCTGTTTTCTCCCATGTAACCTCGGTATCCACCGATCGGGAACTCTGGCTATCTTTCGAAAAGCGTTATTCTTTCAAAACCCGTGCGAATATTTTAGAGCTTCGTTTAGAACTCTACAATGCAAAAAATCAACTACAGAATCCATCGAGCAATACACATGGCGTGTCAAGGATATCGTTGATCAACTAGTTGCGACCTTGGTTACCGTTGATGATGAAGAGACGGTCCTCCACATTCTAAATGGCTTGCCATCTGATTATAGCTCATTCTGCACCTCTCTTCAAACTCGCAATACACAAGAGTACATTTGA

Protein sequence

MDSQPNQTLKHLYPHRTSCPKRTQSRIPSMDLPRLRPHHSYQRHPIHFCFLPCNLGIHRSGTLAIFRKALFFQNPCEYFRASFRTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVDDEETVLHILNGLPSDYSSFCTSLQTRNTQEYI

Homology

[Close]

BLAST of BhiUN297G12 vs. NCBI nr
Match: TYK18951.1 (uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-10
Identity = 35/79 (44.30%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 67  RKALFFQNPCEYFRASFRTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVDDEETVLHI 126
           +K +FFQ+P +Y R     L  KK+ +E+IEQYT R+K +VD+L    V++++EE ++H 
Sbjct: 5   KKEIFFQHPSQYPRPQICPLHHKKNPSETIEQYTSRIKVLVDKLATASVSLEEEEILVHT 64

Query: 127 LNGLPSDYSSFCTSLQTRN 146
           LNGLP+ +++F TS++TR+
Sbjct: 65  LNGLPAAFNTFRTSIRTRS 83

[Close]

BLAST of BhiUN297G12 vs. NCBI nr
Match: KAA0046247.1 (uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-10
Identity = 35/79 (44.30%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 67  RKALFFQNPCEYFRASFRTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVDDEETVLHI 126
           +K +FFQ+P +Y R     L  KK+ +E+IEQYT R+K +VD+L    V++++EE ++H 
Sbjct: 5   KKEIFFQHPSQYPRPQICPLHHKKNPSETIEQYTSRIKVLVDKLATASVSLEEEEILVHT 64

Query: 127 LNGLPSDYSSFCTSLQTRN 146
           LNGLP+ +++F TS++TR+
Sbjct: 65  LNGLPAAFNTFRTSIRTRS 83

[Close]

BLAST of BhiUN297G12 vs. NCBI nr
Match: XP_016902697.1 (PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 62  TLAIFRKALFFQNPCEYFRASF---RTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVD 121
           TL I  K  F      Y  A F    +L  KK+ +ESI+QYT R+K +VD+L A  V+++
Sbjct: 15  TLTIRAKWSFLLFDLGYLYAIFVNVSSLYHKKNPSESIDQYTSRIKALVDKLDAASVSLE 74

Query: 122 DEETVLHILNGLPSDYSSFCTSLQTRN 146
           DEE ++H LNGLP+ +++F TS++TRN
Sbjct: 75  DEEILVHTLNGLPAAFNAFRTSIRTRN 101

[Close]

BLAST of BhiUN297G12 vs. NCBI nr
Match: TYK06402.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-07
Identity = 33/71 (46.48%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 75  PCEYFRASFRTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVDDEETVLHILNGLPSDY 134
           PC   R++  T+  KK+ +ESI++YT R+K +VD+L AT V+++DEE ++H LNGL + +
Sbjct: 21  PCPRCRSALYTI--KKTPSESIDKYTSRIKALVDKLAATSVSLEDEEILVHTLNGLLAAF 80

Query: 135 SSFCTSLQTRN 146
           ++F TS++TRN
Sbjct: 81  NAFRTSIRTRN 89

[Close]

BLAST of BhiUN297G12 vs. NCBI nr
Match: KAA0050146.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-07
Identity = 33/71 (46.48%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 75  PCEYFRASFRTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVDDEETVLHILNGLPSDY 134
           PC   R++  T+  KK+ +ESI++YT R+K +VD+L AT V+++DEE ++H LNGL + +
Sbjct: 21  PCPRCRSALYTI--KKTPSESIDKYTSRIKALVDKLAATSVSLEDEEILVHTLNGLLAAF 80

Query: 135 SSFCTSLQTRN 146
           ++F TS++TRN
Sbjct: 81  NAFRTSIRTRN 89

[Close]

BLAST of BhiUN297G12 vs. ExPASy TrEMBL
Match: A0A5A7TWG5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00450 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-10
Identity = 35/79 (44.30%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 67  RKALFFQNPCEYFRASFRTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVDDEETVLHI 126
           +K +FFQ+P +Y R     L  KK+ +E+IEQYT R+K +VD+L    V++++EE ++H 
Sbjct: 5   KKEIFFQHPSQYPRPQICPLHHKKNPSETIEQYTSRIKVLVDKLATASVSLEEEEILVHT 64

Query: 127 LNGLPSDYSSFCTSLQTRN 146
           LNGLP+ +++F TS++TR+
Sbjct: 65  LNGLPAAFNTFRTSIRTRS 83

[Close]

BLAST of BhiUN297G12 vs. ExPASy TrEMBL
Match: A0A5D3D5X6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00380 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-10
Identity = 35/79 (44.30%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 67  RKALFFQNPCEYFRASFRTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVDDEETVLHI 126
           +K +FFQ+P +Y R     L  KK+ +E+IEQYT R+K +VD+L    V++++EE ++H 
Sbjct: 5   KKEIFFQHPSQYPRPQICPLHHKKNPSETIEQYTSRIKVLVDKLATASVSLEEEEILVHT 64

Query: 127 LNGLPSDYSSFCTSLQTRN 146
           LNGLP+ +++F TS++TR+
Sbjct: 65  LNGLPAAFNTFRTSIRTRS 83

[Close]

BLAST of BhiUN297G12 vs. ExPASy TrEMBL
Match: A0A1S4E394 (uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 62  TLAIFRKALFFQNPCEYFRASF---RTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVD 121
           TL I  K  F      Y  A F    +L  KK+ +ESI+QYT R+K +VD+L A  V+++
Sbjct: 15  TLTIRAKWSFLLFDLGYLYAIFVNVSSLYHKKNPSESIDQYTSRIKALVDKLDAASVSLE 74

Query: 122 DEETVLHILNGLPSDYSSFCTSLQTRN 146
           DEE ++H LNGLP+ +++F TS++TRN
Sbjct: 75  DEEILVHTLNGLPAAFNAFRTSIRTRN 101

[Close]

BLAST of BhiUN297G12 vs. ExPASy TrEMBL
Match: A0A5A7U7J4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001750 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.6e-08
Identity = 33/71 (46.48%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 75  PCEYFRASFRTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVDDEETVLHILNGLPSDY 134
           PC   R++  T+  KK+ +ESI++YT R+K +VD+L AT V+++DEE ++H LNGL + +
Sbjct: 21  PCPRCRSALYTI--KKTPSESIDKYTSRIKALVDKLAATSVSLEDEEILVHTLNGLLAAF 80

Query: 135 SSFCTSLQTRN 146
           ++F TS++TRN
Sbjct: 81  NAFRTSIRTRN 89

[Close]

BLAST of BhiUN297G12 vs. ExPASy TrEMBL
Match: A0A5D3C579 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001010 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.6e-08
Identity = 33/71 (46.48%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 75  PCEYFRASFRTLQCKKSTTESIEQYTWRVKDIVDQLVATLVTVDDEETVLHILNGLPSDY 134
           PC   R++  T+  KK+ +ESI++YT R+K +VD+L AT V+++DEE ++H LNGL + +
Sbjct: 21  PCPRCRSALYTI--KKTPSESIDKYTSRIKALVDKLAATSVSLEDEEILVHTLNGLLAAF 80

Query: 135 SSFCTSLQTRN 146
           ++F TS++TRN
Sbjct: 81  NAFRTSIRTRN 89

The following BLAST results are available for this feature:

BLAST of BhiUN297G12 vs.


Match Name	E-value	Identity	Description

BLAST of BhiUN297G12 vs.


Match Name	E-value	Identity	Description

BLAST of BhiUN297G12 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18951.1	3.4e-10	44.30	uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]	[more]
KAA0046247.1	3.4e-10	44.30	uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa]	[more]
XP_016902697.1	1.2e-07	44.83	PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]	[more]
TYK06402.1	1.6e-07	46.48	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0050146.1	1.6e-07	46.48	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of BhiUN297G12 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWG5	1.6e-10	44.30	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3D5X6	1.6e-10	44.30	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4E394	5.8e-08	44.83	uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=...	[more]
A0A5A7U7J4	7.6e-08	46.48	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3C579	7.6e-08	46.48	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 87..146 e-value: 1.9E-9 score: 37.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN297M12	BhiUN297M12	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding