Bhi12G002177 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G002177
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr12: 77054663 .. 77055442 (+)
RNA-Seq Expression	Bhi12G002177
Synteny	Bhi12G002177

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCATCACCCGCTCACCGCCGTCAATTTACGGAGCGGAAAAATGGAGAAAAACCAGAAGCCAAAAGGCTTCATTAGGCGACTATATCGAGCCGCAAGATCCGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCGTCGACGGCCGCTACATCGCTAAATATCGACGGCGGTGGTGGCGACTCTTTTGCGTTGTCGAGCGAGATGAAATCTGCAAGTAATCCGATAAGATCCGTGGCGGCGGTGCAGAAGCAGGCTTCGTCGGCGCACGGCGGATTTCGCGACGGAATCGGTGAAATGCGAGGAGCGAACAGTGGTTATGGCGGTGGCGACGAGAATGTGGACGTAAAGGCGGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATAGATCGAAAACTGTACTGAGCATTTTTCTTTTTTTTTTTTTTAAGGGTGCTTGTTAACTATTTTATTTTTAAAAATTAAACCTATAAATTCTACATCACTCTACTAATTTTTATAATTTATTTTTTATATTTTAGTAGTATTTTCACCATCAAAGCCAAAGTTTAAAAATTAAAAAAATAATAATAATTTTTAAAAATTTTGGTTTGTTTTATAGCTAAAAATTTTAACATCTGCGTAGGAAATATAAAAACCATAGGAATAAAATTGTGAGGACACAAGCAAAATTTTTAAAATTTAAAAATAAAAAATCAAATATTAATGAACGAAGCCATTTTTTTTAAACCCCAATTTTTCAATTTTGTACAAGTAGGACATAAA

mRNA sequence

CTCCATCACCCGCTCACCGCCGTCAATTTACGGAGCGGAAAAATGGAGAAAAACCAGAAGCCAAAAGGCTTCATTAGGCGACTATATCGAGCCGCAAGATCCGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCGTCGACGGCCGCTACATCGCTAAATATCGACGGCGGTGGTGGCGACTCTTTTGCGTTGTCGAGCGAGATGAAATCTGCAAGTAATCCGATAAGATCCGTGGCGGCGGTGCAGAAGCAGGCTTCGTCGGCGCACGGCGGATTTCGCGACGGAATCGGTGAAATGCGAGGAGCGAACAGTGGTTATGGCGGTGGCGACGAGAATGTGGACGTAAAGGCGGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATAGATCGAAAACTGTACTGAGCATTTTTCTTTTTTTTTTTTTTAAGGGTGCTTGTTAACTATTTTATTTTTAAAAATTAAACCTATAAATTCTACATCACTCTACTAATTTTTATAATTTATTTTTTATATTTTAGTAGTATTTTCACCATCAAAGCCAAAGTTTAAAAATTAAAAAAATAATAATAATTTTTAAAAATTTTGGTTTGTTTTATAGCTAAAAATTTTAACATCTGCGTAGGAAATATAAAAACCATAGGAATAAAATTGTGAGGACACAAGCAAAATTTTTAAAATTTAAAAATAAAAAATCAAATATTAATGAACGAAGCCATTTTTTTTAAACCCCAATTTTTCAATTTTGTACAAGTAGGACATAAA

Coding sequence (CDS)

CTCCATCACCCGCTCACCGCCGTCAATTTACGGAGCGGAAAAATGGAGAAAAACCAGAAGCCAAAAGGCTTCATTAGGCGACTATATCGAGCCGCAAGATCCGCCGGCAAGGCCAAAGTGAAGCAAAGCAACCCGTCGACGGCCGCTACATCGCTAAATATCGACGGCGGTGGTGGCGACTCTTTTGCGTTGTCGAGCGAGATGAAATCTGCAAGTAATCCGATAAGATCCGTGGCGGCGGTGCAGAAGCAGGCTTCGTCGGCGCACGGCGGATTTCGCGACGGAATCGGTGAAATGCGAGGAGCGAACAGTGGTTATGGCGGTGGCGACGAGAATGTGGACGTAAAGGCGGCGACGTACATTTTGTTGGTAAGAGAGCGTTTGAAGATGGAGAGGTCCATAGATCGAAAACTGTACTGA

Protein sequence

LHHPLTAVNLRSGKMEKNQKPKGFIRRLYRAARSAGKAKVKQSNPSTAATSLNIDGGGGDSFALSSEMKSASNPIRSVAAVQKQASSAHGGFRDGIGEMRGANSGYGGGDENVDVKAATYILLVRERLKMERSIDRKLY

Homology

[Close]

BLAST of Bhi12G002177 vs. NCBI nr
Match: KAA0039815.1 (hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK24682.1 hypothetical protein E5676_scaffold266G002320 [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-33
Identity = 92/127 (72.44%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 15  MEKNQKPKGFIRRLYRAARSAGKAKVKQSNPSTAATSLNIDGGGGDSFALSSEMKSASNP 74
           MEKNQK KGFIRRLYRAARSAGKAKVKQ+NP T +TS N  G G DSFA SSE +SASNP
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTPSTSPN-SGDGSDSFANSSETESASNP 60

Query: 75  IRSVAA--VQKQASSAHGGFRDGIGEMRGANSGYGGGDENVDVKAATYILLVRERLKMER 134
            RSVAA  VQKQASSAHG +            GYGGGDENVDVKAATYILLV+ERLKMER
Sbjct: 61  NRSVAAATVQKQASSAHGAY-----------GGYGGGDENVDVKAATYILLVKERLKMER 115

Query: 135 SIDRKLY 140
           S+DR+++
Sbjct: 121 SMDRRVF 115

[Close]

BLAST of Bhi12G002177 vs. NCBI nr
Match: KGN46459.1 (hypothetical protein Csa_005040 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 3.2e-31
Identity = 90/126 (71.43%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 15  MEKNQKPKGFIRRLYRAARSAGKAKVKQSNPSTAATSLNIDGGGGDSFALSSEMKSASNP 74
           ME  QK KGFIRRLYRAARSAGKAKVKQSNP T +TS N  G G D FA SSE KSASNP
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPN-SGDGDDPFANSSETKSASNP 60

Query: 75  IRSVAA--VQKQASSAHGGFRDGIGEMRGANSGYGGGDENVDVKAATYILLVRERLKMER 134
            R VAA  VQKQASS H           GA  GYGGGDENVDVKAATYILLV+ERLKMER
Sbjct: 61  NRPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMER 115

Query: 135 SIDRKL 139
           S+DR++
Sbjct: 121 SMDRRV 115

[Close]

BLAST of Bhi12G002177 vs. NCBI nr
Match: KAG6592959.1 (hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-22
Identity = 77/117 (65.81%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 25  IRRLYRAARSAGKAKV--KQSNP--STAATSLNIDGGGGDSFALSSEMKSASNPIRSVAA 84
           +RRLYRAARSAGKAK   KQSNP  S    +  +  GG   F   SEM+S S P +S AA
Sbjct: 1   MRRLYRAARSAGKAKAKGKQSNPPASMDFATETVGSGGCGRFWERSEMRSESYPNKSAAA 60

Query: 85  V---QKQASSAHGGFRDGIGEMRGANSGYGGGDENVDVKAATYILLVRERLKMERSI 135
               QKQASSAHGGFRDG GEMRG   GY GGDENVDVKA TYIL VRERLKMERS+
Sbjct: 61  PRAGQKQASSAHGGFRDGNGEMRGTYGGY-GGDENVDVKATTYILWVRERLKMERSM 116

[Close]

BLAST of Bhi12G002177 vs. ExPASy TrEMBL
Match: A0A5A7TED2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002320 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.7e-34
Identity = 92/127 (72.44%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 15  MEKNQKPKGFIRRLYRAARSAGKAKVKQSNPSTAATSLNIDGGGGDSFALSSEMKSASNP 74
           MEKNQK KGFIRRLYRAARSAGKAKVKQ+NP T +TS N  G G DSFA SSE +SASNP
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTPSTSPN-SGDGSDSFANSSETESASNP 60

Query: 75  IRSVAA--VQKQASSAHGGFRDGIGEMRGANSGYGGGDENVDVKAATYILLVRERLKMER 134
            RSVAA  VQKQASSAHG +            GYGGGDENVDVKAATYILLV+ERLKMER
Sbjct: 61  NRSVAAATVQKQASSAHGAY-----------GGYGGGDENVDVKAATYILLVKERLKMER 115

Query: 135 SIDRKLY 140
           S+DR+++
Sbjct: 121 SMDRRVF 115

[Close]

BLAST of Bhi12G002177 vs. ExPASy TrEMBL
Match: A0A0A0KCA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-31
Identity = 90/126 (71.43%), Postives = 95/126 (75.40%), Query Frame = 0


Query: 15  MEKNQKPKGFIRRLYRAARSAGKAKVKQSNPSTAATSLNIDGGGGDSFALSSEMKSASNP 74
           ME  QK KGFIRRLYRAARSAGKAKVKQSNP T +TS N  G G D FA SSE KSASNP
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTPSTSPN-SGDGDDPFANSSETKSASNP 60

Query: 75  IRSVAA--VQKQASSAHGGFRDGIGEMRGANSGYGGGDENVDVKAATYILLVRERLKMER 134
            R VAA  VQKQASS H           GA  GYGGGDENVDVKAATYILLV+ERLKMER
Sbjct: 61  NRPVAATTVQKQASSTH----------HGAYGGYGGGDENVDVKAATYILLVKERLKMER 115

Query: 135 SIDRKL 139
           S+DR++
Sbjct: 121 SMDRRV 115

The following BLAST results are available for this feature:

BLAST of Bhi12G002177 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G002177 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G002177 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039815.1	1.2e-33	72.44	hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK2468...	[more]
KGN46459.1	3.2e-31	71.43	hypothetical protein Csa_005040 [Cucumis sativus]	[more]
KAG6592959.1	2.7e-22	65.81	hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Bhi12G002177 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TED2	5.7e-34	72.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KCA4	1.6e-31	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..57
None	No IPR available	PANTHER	PTHR36030	FAMILY NOT NAMED	coord: 15..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M002177	Bhi12M002177	mRNA