Bhi12G002113 (gene) Wax gourd (B227) v1

Overview
NameBhi12G002113
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUPF0481 protein At3g47200-like
Locationchr12: 75077006 .. 75077305 (-)
RNA-Seq ExpressionBhi12G002113
SyntenyBhi12G002113
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGAAGCAGCCACTTCTGCCCATCAGACTTAAGAAGTATAATGTGGTAATTCAGGTCAAGGACAATCTTGATAAATTTCACGATTCAGCTACGGTGGATGAGGGCGGATTATCAGGAGGAAACACCCAACCTTCGATCTACAAAATATCAGAATTCATGAGAAAAATTCAAGAAAAAGCTTTCGAGCCACAGTTGTATCGTTTGGGCCATATCACCATGGGAAACAGCATTTGGTTTCAATGGAACAGGAAAAACAGAAAGCGTTTCTCCGTTTTAAAGATAAAAAAAATCTGA

mRNA sequence

ATGGAAGAGAAGCAGCCACTTCTGCCCATCAGACTTAAGAAGTATAATGTGGTAATTCAGGTCAAGGACAATCTTGATAAATTTCACGATTCAGCTACGGTGGATGAGGGCGGATTATCAGGAGGAAACACCCAACCTTCGATCTACAAAATATCAGAATTCATGAGAAAAATTCAAGAAAAAGCTTTCGAGCCACAGTTGTATCGTTTGGGCCATATCACCATGGGAAACAGCATTTGGTTTCAATGGAACAGGAAAAACAGAAAGCGTTTCTCCGTTTTAAAGATAAAAAAAATCTGA

Coding sequence (CDS)

ATGGAAGAGAAGCAGCCACTTCTGCCCATCAGACTTAAGAAGTATAATGTGGTAATTCAGGTCAAGGACAATCTTGATAAATTTCACGATTCAGCTACGGTGGATGAGGGCGGATTATCAGGAGGAAACACCCAACCTTCGATCTACAAAATATCAGAATTCATGAGAAAAATTCAAGAAAAAGCTTTCGAGCCACAGTTGTATCGTTTGGGCCATATCACCATGGGAAACAGCATTTGGTTTCAATGGAACAGGAAAAACAGAAAGCGTTTCTCCGTTTTAAAGATAAAAAAAATCTGA

Protein sequence

MEEKQPLLPIRLKKYNVVIQVKDNLDKFHDSATVDEGGLSGGNTQPSIYKISEFMRKIQEKAFEPQLYRLGHITMGNSIWFQWNRKNRKRFSVLKIKKI
Homology
BLAST of Bhi12G002113 vs. NCBI nr
Match: XP_038875622.1 (UPF0481 protein At3g47200-like [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 54/97 (55.67%), Postives = 61/97 (62.89%), Query Frame = 0

Query: 3  EKQPLLPIRL--------KKYNVVIQVKDNLDKFHDSATVDEGGLSGGNTQPSIYKISEF 62
          E+QPLLPIR         KK +VVIQVK+NL+K  DSA VDE G  G +TQPSIYKI EF
Sbjct: 2  EEQPLLPIRHIRNDNQVGKKDDVVIQVKNNLNKLLDSAAVDEMGPLGESTQPSIYKIPEF 61

Query: 63 MRKIQEKAFEPQLYRLGHITMGNSIWFQWNRKNRKRF 92
          MRKIQ KAFEPQL  LG    G         + +K F
Sbjct: 62 MRKIQAKAFEPQLVSLGPYHHGKEHLVSMEEEKQKAF 98

BLAST of Bhi12G002113 vs. NCBI nr
Match: KGN46402.1 (hypothetical protein Csa_004940 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-06
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 1  MEEKQPLLP----------IRLKKYNVVIQVKDNLDK-FHDSATVDEGGLSGGNTQPSIY 60
          +EE+Q LLP          + + K +VVIQVK+NL+K   +   VDE G SG   +PSIY
Sbjct: 4  VEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIY 63

Query: 61 KISEFMRKIQEKAFEPQLYRLG 72
          KI +FM+ IQ  A++PQL   G
Sbjct: 64 KIPKFMKDIQPNAYKPQLVLFG 85

BLAST of Bhi12G002113 vs. NCBI nr
Match: XP_022148888.1 (UPF0481 protein At3g47200-like [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 0

Query: 3  EKQPLLPIRLKKYN----VVIQVKDNLDK-FHDSATVDEGGLSGGNTQPSIYKISEFMRK 62
          E+ P +PIR+ K N    VVI+V++NL++   D+  V+  GL       SIYKI  FMR+
Sbjct: 2  ERPPSMPIRIIKDNNESAVVIRVRENLNQLLLDTPAVEAEGL-------SIYKIPHFMRQ 61

Query: 63 IQEKA-FEPQLYRLGHITMGNSIWFQWNRKNRKRF 92
          +Q KA FEPQL   G    G S  F+   + RK F
Sbjct: 62 VQPKALFEPQLVSFGPYHHGESHLFRMELEKRKAF 89

BLAST of Bhi12G002113 vs. ExPASy TrEMBL
Match: A0A0A0KDE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G090770 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 1  MEEKQPLLP----------IRLKKYNVVIQVKDNLDK-FHDSATVDEGGLSGGNTQPSIY 60
          +EE+Q LLP          + + K +VVIQVK+NL+K   +   VDE G SG   +PSIY
Sbjct: 4  VEEEQTLLPMYRRNEHKDQLPMNKKDVVIQVKNNLEKQLTELVLVDEFGSSGKTIKPSIY 63

Query: 61 KISEFMRKIQEKAFEPQLYRLG 72
          KI +FM+ IQ  A++PQL   G
Sbjct: 64 KIPKFMKDIQPNAYKPQLVLFG 85

BLAST of Bhi12G002113 vs. ExPASy TrEMBL
Match: A0A6J1D5C0 (UPF0481 protein At3g47200-like OS=Momordica charantia OX=3673 GN=LOC111017450 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 0

Query: 3  EKQPLLPIRLKKYN----VVIQVKDNLDK-FHDSATVDEGGLSGGNTQPSIYKISEFMRK 62
          E+ P +PIR+ K N    VVI+V++NL++   D+  V+  GL       SIYKI  FMR+
Sbjct: 2  ERPPSMPIRIIKDNNESAVVIRVRENLNQLLLDTPAVEAEGL-------SIYKIPHFMRQ 61

Query: 63 IQEKA-FEPQLYRLGHITMGNSIWFQWNRKNRKRF 92
          +Q KA FEPQL   G    G S  F+   + RK F
Sbjct: 62 VQPKALFEPQLVSFGPYHHGESHLFRMELEKRKAF 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038875622.11.1e-1455.67UPF0481 protein At3g47200-like [Benincasa hispida][more]
KGN46402.15.7e-0645.12hypothetical protein Csa_004940 [Cucumis sativus][more]
XP_022148888.12.4e-0442.11UPF0481 protein At3g47200-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0A0KDE12.8e-0645.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G090770 PE=4 SV=1[more]
A0A6J1D5C01.2e-0442.11UPF0481 protein At3g47200-like OS=Momordica charantia OX=3673 GN=LOC111017450 PE... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M002113Bhi12M002113mRNA