Bhi12G001491 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G001491
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	DNA-directed RNA polymerase III subunit RPC9
Location	chr12: 54114667 .. 54116976 (-)
RNA-Seq Expression	Bhi12G001491
Synteny	Bhi12G001491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAAGCCCAAGTAAACACTTTCTTGACAAATTTTTGGTAATGGACGATTTCGGATCGACGAGGGTTTTAGTCGCCGTCGTCGAGTGGTTTTTGATTCCGGCCAAATCTTGAAGCTTCTTCTCCATGAAAATGTAAGTTCTTAATCCTTATTCTTCCTGTTATTTGTTTCAAAACTGTTCGAACTATTTGATTCCATGATTTCTGTTTAATATCGACGTCAAATTACTGTCGCTAACAATCTAGTCGGAAGTATTGTTTGCAGATTAGAAGCCAATGCAGGCCCTCTTACGAATTTTGAGGTTCTCGACTTTTTAAGATCAAAGGGGGCAGCGAAAGATCCCACTAGGGTTCTTGCGAAAGTAGCACCATCTGAATACAAGGTTATATATGTTTCTCCTCTTCTTTTGTGCTGGACGAGTTGATGTTGCAGGTTTTAATCGAATCATTTTTTTTCTTTATTTTAGGTTTATGATTATTTGAATCAAACTCCTGCTTGTAATCAATCGAGAGAAGCTATTCTTGAGTTTGTCGAGAGGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATTAATTGTCGGCCGATTGCCCCGGTTGAGTTATTTCCGGTAATTTCCCCCTTTCATGACAGTAGTTCTTCCCGTATGTTTGTAAATTTTTATATGAATATTATGCTATGTTTTGGTATGTATTCTCTGTTTTAAATTCATCTTACATTTTCCCATATGTGAATGAGGCCATTTCTTTTCATTGGTGTCTTAATTTTCTTTCTGAATAGTCTTTGTGTTAGGAGGTCAAGGAACTGTGAATGCCTTAGAATGTTTGGTGGACGGAGGAGATCCATAATATTTCAGCTATTTTAAAATGATACCTTTTAATGTGTTGGAAGAGAATTACGTAGTCTTTGTAGCCTTTCTTTTTTCTGTTGACAATACAAAAGCTTTAGATTCTCTGGCTATGAAGCACATTTGTCTAGTTATTAAGAACGTTGTGGAGTAGGTGTCAGGAATTGTAGTTAAAATTCAACTATAGTCATCTTCATCAGTTAATCTGTAGTTCTGTAAAGACTGACTTGGGGGTGGTCGGAAGGATTCCTGAATAGCATTCGGCTTTCTGGACAAAAGTTCTACTCGTGGGTTAAGTTGCTTCAGAAATAGTATAGTGAAGTGTTTTCTTTTTCCTTCCAAAACGATGGACCCCCGTGTATACTGCAAAATATAACTTAACCTTTGCAAGCTGCCCAAAAATTATTCTTGAAAATAGTTCTGTAGATGAAAGTAAAAAGTTCTTTCCGTCATACCTCAAAGGTACCTATAGCACTCTTATATTTTACTTATTTCTGACAATCTTACTAAATCTCAAACACATTTTTTTAGTTCTATAATTTTCTACTTGAACCTTGAACTTAAGACTTTATATCTCCCAACATTCCAGAACTCATGTCAACTAATACTGGGCCATTCTTGGGAGGCAATGTTGTTTTCCAAAATAGTTCCCATTCGAATTGTTGTCGGTGCTTTTACCATGGTCCTCTTTCTATGTTGGAAACTTGGGATGCTTTGTTTACGAGTTCATATAAGAATCTGATGGACGAAGAAAATGAATACATTAATTTGGATGAGTGGTTAAATTGAAATGTAGATTGATGGGGGGTCTATTCCTTTTGTTTCTAGATTATAGAGAGCTGTGAAGCTCGAATGGGAGATGATGGAGTTGATGGAGGAAGAATGCAAGAGCTTGTGACGATGGTGGAACAGGTGTTCCCTACACCTCAAAATGAACCAACATCCGAAGTAGCTCCAAAGGAAGGTAAAGAGGCCGAAACCATGGAGGAACAAGAAGTAGCTGGGGATGTCAATGACGAACCCATGGAAAAGACTTGAACCCAGTTCGAGAATTAAGTGATTGTTGGTAGATGTAAGATTAAATGAGCTGCCTGTAACTCAAACTATTCATAATGTGCAGACATGGGTTTCAGGTGAAAGATGAAACTGAGAGGGACAGTTCCCATAAATAGACTGTGAGAAATCAAAGTCAAAGAAAGCTTTTGAGTGCTAAACAATGAAAATAGTTGTGTTTCTTTTTATCACTATTCTTTTGTTTGTTAAATAAACCCTAATACTCTGTACATGGAAGAAGAAGCCGAGATTTTCGTTTCCCTAGGTTATTCCCATCTCCTCAAAGCAAACAGCAGAGGCAGCACATGCTCTCGACACTGAATTACTGACATTAACAATACATGCTCTCATAATTTTAGCGTCATATCATACTTAGATACTACCTTATGCATCAGGTCAGGC

mRNA sequence

CCGAAGCCCAAGTAAACACTTTCTTGACAAATTTTTGGTAATGGACGATTTCGGATCGACGAGGGTTTTAGTCGCCGTCGTCGAGTGGTTTTTGATTCCGGCCAAATCTTGAAGCTTCTTCTCCATGAAAATATTAGAAGCCAATGCAGGCCCTCTTACGAATTTTGAGGTTCTCGACTTTTTAAGATCAAAGGGGGCAGCGAAAGATCCCACTAGGGTTCTTGCGAAAGTAGCACCATCTGAATACAAGGTTTATGATTATTTGAATCAAACTCCTGCTTGTAATCAATCGAGAGAAGCTATTCTTGAGTTTGTCGAGAGGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATTAATTGTCGGCCGATTGCCCCGGTTGAGTTATTTCCGATTATAGAGAGCTGTGAAGCTCGAATGGGAGATGATGGAGTTGATGGAGGAAGAATGCAAGAGCTTGTGACGATGGTGGAACAGGTGTTCCCTACACCTCAAAATGAACCAACATCCGAAGTAGCTCCAAAGGAAGGTAAAGAGGCCGAAACCATGGAGGAACAAGAAGTAGCTGGGGATGTCAATGACGAACCCATGGAAAAGACTTGAACCCAGTTCGAGAATTAAGTGATTGTTGGTAGATGTAAGATTAAATGAGCTGCCTGTAACTCAAACTATTCATAATGTGCAGACATGGGTTTCAGGTGAAAGATGAAACTGAGAGGGACAGTTCCCATAAATAGACTGTGAGAAATCAAAGTCAAAGAAAGCTTTTGAGTGCTAAACAATGAAAATAGTTGTGTTTCTTTTTATCACTATTCTTTTGTTTGTTAAATAAACCCTAATACTCTGTACATGGAAGAAGAAGCCGAGATTTTCGTTTCCCTAGGTTATTCCCATCTCCTCAAAGCAAACAGCAGAGGCAGCACATGCTCTCGACACTGAATTACTGACATTAACAATACATGCTCTCATAATTTTAGCGTCATATCATACTTAGATACTACCTTATGCATCAGGTCAGGC

Coding sequence (CDS)

ATGAAAATATTAGAAGCCAATGCAGGCCCTCTTACGAATTTTGAGGTTCTCGACTTTTTAAGATCAAAGGGGGCAGCGAAAGATCCCACTAGGGTTCTTGCGAAAGTAGCACCATCTGAATACAAGGTTTATGATTATTTGAATCAAACTCCTGCTTGTAATCAATCGAGAGAAGCTATTCTTGAGTTTGTCGAGAGGTCCAAAGAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATTAATTGTCGGCCGATTGCCCCGGTTGAGTTATTTCCGATTATAGAGAGCTGTGAAGCTCGAATGGGAGATGATGGAGTTGATGGAGGAAGAATGCAAGAGCTTGTGACGATGGTGGAACAGGTGTTCCCTACACCTCAAAATGAACCAACATCCGAAGTAGCTCCAAAGGAAGGTAAAGAGGCCGAAACCATGGAGGAACAAGAAGTAGCTGGGGATGTCAATGACGAACCCATGGAAAAGACTTGA

Protein sequence

MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAILEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVEQVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT

Homology

[Close]

BLAST of Bhi12G001491 vs. TAIR 10
Match: AT5G62950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  Q+RE+I
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
            +F ++ K++ LAKAEILNIIN RP + VEL PIIE+    + D  +D   + ELV  + 
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIEN----LDDREIDTDGILELVKDLL 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAET 145
              PT         +PK+  E ET
Sbjct: 121 PPLPT-------TASPKDDDEEET 133

[Close]

BLAST of Bhi12G001491 vs. TAIR 10
Match: AT5G62950.3 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  Q+RE+I
Sbjct: 1   MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
            +F ++ K++ LAKAEILNIIN RP + VEL PIIE+    + D  +D   + ELV  + 
Sbjct: 61  NKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIEN----LDDREIDTDGILELVKDLL 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAET 145
              PT         +PK+  E ET
Sbjct: 121 PPLPT-------TASPKDDDEEET 133

[Close]

BLAST of Bhi12G001491 vs. TAIR 10
Match: AT5G62950.2 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-28
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
          MKI++ANAG LTNFEVLDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  Q+RE+I
Sbjct: 1  MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60

Query: 61 LEFVERSKEYDLAKAEILNIINCRPIAPVELFP 94
           +F ++ K++ LAKAEILNIIN RP + VEL P
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLP 93

[Close]

BLAST of Bhi12G001491 vs. TAIR 10
Match: AT3G28956.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-27
Identity = 72/146 (49.32%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 4   LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAILEF 63
           ++ANAG LTNFE+LDFL S+GA+KD TRV+A +A SEYKVYDYL +T A  Q+RE++ + 
Sbjct: 1   MKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKS 60

Query: 64  VERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVEQVF 123
            ++ K++ LAKAEILNIIN  P + VEL PIIE+ + R  D   DG     ++ +V+ + 
Sbjct: 61  ADKCKDFKLAKAEILNIINLWPSSIVELLPIIENLDDREID--TDG-----ILELVKDLL 120

Query: 124 PTPQNEPTSEVAPKEGKEAETMEEQE 150
           P     PT+E +PK+  E E  E  E
Sbjct: 121 PP---LPTAE-SPKDNDEEEETENGE 135

[Close]

BLAST of Bhi12G001491 vs. ExPASy Swiss-Prot
Match: A0JN61 (DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.1e-09
Identity = 33/114 (28.95%), Postives = 60/114 (52.63%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  +
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCKH 60

Query: 61  QSREAILEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVD 109
           QS E + EF+   K + L KAE L ++N RP+  VE+  ++E  E R+ ++ ++
Sbjct: 61  QSPEIVREFLTAMKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 114

[Close]

BLAST of Bhi12G001491 vs. ExPASy Swiss-Prot
Match: Q8VHM6 (DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Crcp PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKN 60

Query: 61  QSREAILEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQE 120
           QS   + EF+   K + L KAE L ++N RP+  VE+  ++E  E R+ ++     +++ 
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEE-----QIEA 120

Query: 121 LVTMVEQVFPT-PQNEPTSEVAPKEGKEAETMEEQEVA 152
           L+  V  + P  P++E +     K       MEE+E A
Sbjct: 121 LLHTVTSILPAGPEDEQS-----KSTSNDAAMEEEEPA 148

[Close]

BLAST of Bhi12G001491 vs. ExPASy Swiss-Prot
Match: Q60482 (DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-08
Identity = 47/157 (29.94%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPS---------EYKVYDYLNQTP 60
           M++ +AN+  L+N+EV   L      KD  R   K+  S          Y+   YL++TP
Sbjct: 1   MEVKDANSALLSNYEVFQLLTD---LKDQRRESGKMKHSAGQQNLNTITYETLKYLSKTP 60

Query: 61  ACNQSREAILEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGR 120
             +QS E + EF+   K + L KAE L ++N RP+  VE+  ++E  E R  ++     +
Sbjct: 61  CRHQSPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEETEERFTEE----EQ 120

Query: 121 MQELVTMVEQVFPTPQNEPTSEVAPKEGKEAETMEEQ 149
           ++ L+  V  + P    EP  E    +    E MEE+
Sbjct: 121 IEALLHTVTHILPA---EPEVE----QMASTEAMEEE 143

[Close]

BLAST of Bhi12G001491 vs. ExPASy Swiss-Prot
Match: O35427 (DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-08
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACN 60
           M++ +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  N
Sbjct: 1   MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRN 60

Query: 61  QSREAILEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQE 120
           QS   + EF+   K + L KAE L ++N RP+  VE+  ++E  E R+ ++     +++ 
Sbjct: 61  QSPAIVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEE-----QIEA 120

Query: 121 LVTMVEQVFPT-PQNEPTSEVAPKEGKEAETMEEQEVA 152
           L+  V  + P  P++E +     K       MEE+E A
Sbjct: 121 LLHTVTSILPAGPEDEQS-----KSTSNDVAMEEEEPA 148

[Close]

BLAST of Bhi12G001491 vs. ExPASy Swiss-Prot
Match: O75575 (DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-07
Identity = 42/157 (26.75%), Postives = 77/157 (49.04%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACN 60
           M++ +AN+  L+N+EV   L      R +      +     +    Y+   Y+++TP  +
Sbjct: 1   MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60

Query: 61  QSREAILEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQE 120
           QS E + EF+   K + L KAE L ++N RP+  VE+  ++E  E R+ ++     +++ 
Sbjct: 61  QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEE-----QIEA 120

Query: 121 LVTMVEQVFPTPQNEPTSEVAPKEGKEAETMEEQEVA 152
           L+  V  + P    EP +E   K       M+E++ A
Sbjct: 121 LLHTVTSILPA---EPEAE-QKKNTNSNVAMDEEDPA 148

[Close]

BLAST of Bhi12G001491 vs. NCBI nr
Match: XP_038875324.1 (uncharacterized protein LOC120067805 [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE
Sbjct: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
           QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT
Sbjct: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 162

[Close]

BLAST of Bhi12G001491 vs. NCBI nr
Match: XP_008449317.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo] >KAA0057449.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo var. makuwa] >TYK30148.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 124/162 (76.54%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQTPACNQ+REA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           + FVE+SKEYDLAKAEILNIIN RPI PVELFPIIE+C+ RMG++  +  RM+E+ +MVE
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATE--RMEEMGSMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
            VFPTPQ +PT E  P EG EAETMEEQE AGD  +EP++ T
Sbjct: 121 HVFPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of Bhi12G001491 vs. NCBI nr
Match: XP_004145392.1 (DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >XP_031736825.1 DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >KGN61665.1 hypothetical protein Csa_006033 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 125/162 (77.16%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQT ACNQ+REAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           + F E+SKEYDLAKAEILNIIN RP  PVELFP+IE+C+ARMG+   +  RM+E+  MVE
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATE--RMEEIGLMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
            VFPTPQNEPT EV PKEG EAE ME QE AGD ++EPM+ T
Sbjct: 121 HVFPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]

BLAST of Bhi12G001491 vs. NCBI nr
Match: XP_023548749.1 (uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 DNA-directed RNA polymerase III subunit RPC9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013528.1 DNA-directed RNA polymerase III subunit RPC9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.7e-61
Identity = 127/162 (78.40%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT ACNQ+REAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           +EFV++SK+YDLAKAE+LNI+N RPI PVE+FPIIE  + RMGDDG+     QEL  MVE
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGI-----QELTEMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
           QVFPTPQ EPTSE AP EGKEAETM EQE   D   EPME T
Sbjct: 121 QVFPTPQTEPTSEAAPMEGKEAETMAEQEEIVDAGQEPMETT 157

[Close]

BLAST of Bhi12G001491 vs. NCBI nr
Match: XP_023006759.1 (uncharacterized protein LOC111499396 [Cucurbita maxima] >XP_023006760.1 uncharacterized protein LOC111499396 [Cucurbita maxima])

HSP 1 Score: 244.6 bits (623), Expect = 5.9e-61
Identity = 127/162 (78.40%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT ACNQ+REAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           +EFV++SK+YDLAKAE+LNI+N RPI PVE+FPIIE  + RMGDDG+     QEL  MVE
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGI-----QELTEMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
           QVFPTPQ EPTSEVAP EGKEAETM EQ    D   EPME T
Sbjct: 121 QVFPTPQTEPTSEVAPMEGKEAETMAEQVEIVDAGQEPMETT 157

[Close]

BLAST of Bhi12G001491 vs. ExPASy TrEMBL
Match: A0A5A7UV88 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001320 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.8e-62
Identity = 124/162 (76.54%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQTPACNQ+REA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           + FVE+SKEYDLAKAEILNIIN RPI PVELFPIIE+C+ RMG++  +  RM+E+ +MVE
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATE--RMEEMGSMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
            VFPTPQ +PT E  P EG EAETMEEQE AGD  +EP++ T
Sbjct: 121 HVFPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of Bhi12G001491 vs. ExPASy TrEMBL
Match: A0A0A0LIC1 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis sativus OX=3659 GN=Csa_2G222080 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.8e-62
Identity = 125/162 (77.16%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQT ACNQ+REAI
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           + F E+SKEYDLAKAEILNIIN RP  PVELFP+IE+C+ARMG+   +  RM+E+  MVE
Sbjct: 61  INFAEKSKEYDLAKAEILNIINLRPTTPVELFPVIENCDARMGEGATE--RMEEIGLMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
            VFPTPQNEPT EV PKEG EAE ME QE AGD ++EPM+ T
Sbjct: 121 HVFPTPQNEPTFEVTPKEGNEAEAMEVQEGAGDADEEPMQTT 160

[Close]

BLAST of Bhi12G001491 vs. ExPASy TrEMBL
Match: A0A1S3BLS4 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo OX=3656 GN=LOC103491231 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.8e-62
Identity = 124/162 (76.54%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKV+DYLNQTPACNQ+REA+
Sbjct: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTPACNQTREAV 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           + FVE+SKEYDLAKAEILNIIN RPI PVELFPIIE+C+ RMG++  +  RM+E+ +MVE
Sbjct: 61  IAFVEKSKEYDLAKAEILNIINLRPITPVELFPIIENCDVRMGEEATE--RMEEMGSMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
            VFPTPQ +PT E  P EG EAETMEEQE AGD  +EP++ T
Sbjct: 121 HVFPTPQIQPTFEATPNEGNEAETMEEQEGAGDAVEEPIQTT 160

[Close]

BLAST of Bhi12G001491 vs. ExPASy TrEMBL
Match: A0A6J1L324 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC111499396 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.9e-61
Identity = 127/162 (78.40%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT ACNQ+REAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           +EFV++SK+YDLAKAE+LNI+N RPI PVE+FPIIE  + RMGDDG+     QEL  MVE
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGI-----QELTEMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
           QVFPTPQ EPTSEVAP EGKEAETM EQ    D   EPME T
Sbjct: 121 QVFPTPQTEPTSEVAPMEGKEAETMAEQVEIVDAGQEPMETT 157

[Close]

BLAST of Bhi12G001491 vs. ExPASy TrEMBL
Match: A0A6J1H2X6 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LOC111459926 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.7e-61
Identity = 126/162 (77.78%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPACNQSREAI 60
           MKILEANAG LTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQT ACNQ+REAI
Sbjct: 1   MKILEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAI 60

Query: 61  LEFVERSKEYDLAKAEILNIINCRPIAPVELFPIIESCEARMGDDGVDGGRMQELVTMVE 120
           +EFV++SK+YDLAKAE+LNI+N RPI PVE+FPIIE  + RMGDDG+     QEL  MVE
Sbjct: 61  IEFVDKSKKYDLAKAELLNILNLRPITPVEIFPIIEDSDVRMGDDGI-----QELTEMVE 120

Query: 121 QVFPTPQNEPTSEVAPKEGKEAETMEEQEVAGDVNDEPMEKT 163
           QVFPTPQ EPTSE  P EGKEAETM EQE   D   EPME T
Sbjct: 121 QVFPTPQTEPTSEAVPMEGKEAETMAEQEEIVDAGQEPMETT 157

The following BLAST results are available for this feature:

BLAST of Bhi12G001491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62950.1	2.3e-31	52.78	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.3	2.3e-31	52.78	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.2	1.9e-28	65.59	RNA polymerase II, Rpb4, core protein	[more]
AT3G28956.1	1.6e-27	49.32	RNA polymerase II, Rpb4, core protein	[more]

BLAST of Bhi12G001491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0JN61	7.1e-09	28.95	DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 ...	[more]
Q8VHM6	2.1e-08	27.85	DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Cr...	[more]
Q60482	2.7e-08	29.94	DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP...	[more]
O35427	2.7e-08	27.85	DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE...	[more]
O75575	1.0e-07	26.75	DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=...	[more]

BLAST of Bhi12G001491 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875324.1	1.5e-83	100.00	uncharacterized protein LOC120067805 [Benincasa hispida]	[more]
XP_008449317.1	1.2e-61	76.54	PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Cucumis melo] >KAA...	[more]
XP_004145392.1	1.2e-61	77.16	DNA-directed RNA polymerase III subunit rpc9 [Cucumis sativus] >XP_031736825.1 D...	[more]
XP_023548749.1	2.7e-61	78.40	uncharacterized protein LOC111807313 [Cucurbita pepo subsp. pepo] >KAG6574960.1 ...	[more]
XP_023006759.1	5.9e-61	78.40	uncharacterized protein LOC111499396 [Cucurbita maxima] >XP_023006760.1 uncharac...	[more]

BLAST of Bhi12G001491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV88	5.8e-62	76.54	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0LIC1	5.8e-62	77.16	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]
A0A1S3BLS4	5.8e-62	76.54	DNA-directed RNA polymerase III subunit RPC9 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1L324	2.9e-61	78.40	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H2X6	3.7e-61	77.78	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 1..126 e-value: 2.6E-17 score: 73.5
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 1..124 e-value: 3.2E-27 score: 97.0
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 11..108 e-value: 7.3E-18 score: 65.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..162
IPR038846	DNA-directed RNA polymerase III subunit RPC9	PANTHER	PTHR15561	CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN	coord: 1..146
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 4..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M001491	Bhi12M001491	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding