Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATGATGAAACTATTCTAGAGTTTAACCTGCGTCTTCTAGACATTTCCAATGAATCTTTTTTTCTCGGAGAGAAAATTTTAGAGGAGAAGCTGGTTCAAAAAGTTTTACGCTCCTTACCTAAAAGATTTTATATGAAGGACATAGCTATTGAAGAGACCCATGATATTACCAACATAAAACCTGATGAATTATTTGGATCCCTTCAAATATTTGAAATGTCCCTTGAAGGTCAATCTAAGAAGAAATCTAAGGGGATTGTACTACAATCCTCAATGAGCAATGAAAGTTCTAAGAGCAAGAACAAAAAAACTGATGAAAATCTAGCTGAATCATTTTTTCTTATGGCAAAGAAGTTTAGCAAAGCTCTTAGACGATGGGACAAACATTTACTATCCCGTGGAAACAATGTGTCCTCCCATGTCAAGGACATTAGTAACATCACCAATAACTTTGATCCAAAGCTCTCGATAGTTCCTACAAAAAGGATAGAAAGTGACGAAGGAACCAACAATAGTCAAGGTGTCAAAGGGAAAAATTTTAGATGTCGAGAATGTGAAGGGCTTGGATACTTTCAAAGTGAATGCCCAAACTTTATGA
mRNA sequence
ATGATTGATGATGAAACTATTCTAGAGTTTAACCTGCGTCTTCTAGACATTTCCAATGAATCTTTTTTTCTCGGAGAGAAAATTTTAGAGGAGAAGCTGGTTCAAAAAGTTTTACGCTCCTTACCTAAAAGATTTTATATGAAGGACATAGCTATTGAAGAGACCCATGATATTACCAACATAAAACCTGATGAATTATTTGGATCCCTTCAAATATTTGAAATGTCCCTTGAAGGTCAATCTAAGAAGAAATCTAAGGGGATTGTACTACAATCCTCAATGAGCAATGAAAGTTCTAAGAGCAAGAACAAAAAAACTGATGAAAATCTAGCTGAATCATTTTTTCTTATGGCAAAGAAGTTTAGCAAAGCTCTTAGACGATGGGACAAACATTTACTATCCCGTGGAAACAATGTGTCCTCCCATGTCAAGGACATTAGTAACATCACCAATAACTTTGATCCAAAGCTCTCGATAGTTCCTACAAAAAGGATAGAAATCAAGGTGTCAAAGGGAAAAATTTTAGATGTCGAGAATGTGAAGGGCTTGGATACTTTCAAAGTGAATGCCCAAACTTTATGA
Coding sequence (CDS)
ATGATTGATGATGAAACTATTCTAGAGTTTAACCTGCGTCTTCTAGACATTTCCAATGAATCTTTTTTTCTCGGAGAGAAAATTTTAGAGGAGAAGCTGGTTCAAAAAGTTTTACGCTCCTTACCTAAAAGATTTTATATGAAGGACATAGCTATTGAAGAGACCCATGATATTACCAACATAAAACCTGATGAATTATTTGGATCCCTTCAAATATTTGAAATGTCCCTTGAAGGTCAATCTAAGAAGAAATCTAAGGGGATTGTACTACAATCCTCAATGAGCAATGAAAGTTCTAAGAGCAAGAACAAAAAAACTGATGAAAATCTAGCTGAATCATTTTTTCTTATGGCAAAGAAGTTTAGCAAAGCTCTTAGACGATGGGACAAACATTTACTATCCCGTGGAAACAATGTGTCCTCCCATGTCAAGGACATTAGTAACATCACCAATAACTTTGATCCAAAGCTCTCGATAGTTCCTACAAAAAGGATAGAAATCAAGGTGTCAAAGGGAAAAATTTTAGATGTCGAGAATGTGAAGGGCTTGGATACTTTCAAAGTGAATGCCCAAACTTTATGA
Protein sequence
MIDDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITNIKPDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKKFSKALRRWDKHLLSRGNNVSSHVKDISNITNNFDPKLSIVPTKRIEIKVSKGKILDVENVKGLDTFKVNAQTL
Homology
BLAST of Bhi12G001439 vs. NCBI nr
Match:
KAA0032992.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21974.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 131.3 bits (329), Expect = 8.7e-27
Identity = 81/191 (42.41%), Postives = 123/191 (64.40%), Query Frame = 0
Query: 3 DDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITNIK 62
+DET+ E+N R+L+I+NES LGEKI + K+V+KVLRSLP++F MK AIEE HDIT +K
Sbjct: 92 EDETVSEYNERVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKITAIEEAHDITKLK 151
Query: 63 PDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKKFS 122
DELFGSL FEM++ + KK KG+ +S +E++ +++ K +EN+ ES L+ K+FS
Sbjct: 152 LDELFGSLLTFEMTISHKENKKGKGVAFKSIYEDETTVNQSDK-EENVKESIDLLIKQFS 211
Query: 123 KALRRWDKHLLSRGNNVSSHV----KDISNITNNFDPKLSIVPTKRIEIKVSKGKILDVE 182
+ ++ K+L + G+N + + KD N T F+ + + K + + LDVE
Sbjct: 212 NVVEKF-KNLNTTGSNAQNLINYQRKDGKNNTRRFNENSNRRSSDYGRKKGANEEFLDVE 271
Query: 183 NVKGLDTFKVN 190
NV LD ++N
Sbjct: 272 NVMELDIIRLN 280
BLAST of Bhi12G001439 vs. NCBI nr
Match:
KAA0046523.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK28735.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25
Identity = 79/193 (40.93%), Postives = 124/193 (64.25%), Query Frame = 0
Query: 1 MIDDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITN 60
M +DE++LE+N R+L+I+NES LGEK + K+V+KVLRSLP++F MK IEE +DIT
Sbjct: 72 MFEDESVLEYNERVLEIANESLLLGEKNSDSKIVRKVLRSLPRKFDMKATTIEEAYDITK 131
Query: 61 IKPDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKK 120
+K DELFGSL FEM++ + KK KGI +S +E++ +++ K +EN+ ES L+ K+
Sbjct: 132 LKLDELFGSLLTFEMAISHRENKKGKGIAFKSIYEDETTVNQSDK-EENMNESIDLLIKQ 191
Query: 121 FSKALRRWDKHLLSRGNNVSSHV----KDISNITNNFDPKLSIVPTKRIEIKVSKGKILD 180
FS ++++ K+L + G+N + + KD N F+ + + K +K + LD
Sbjct: 192 FSNVVKKF-KNLNTTGSNAQNLINYQRKDGENNKRRFNENSNRRNSDYRRKKRAKEEFLD 251
Query: 181 VENVKGLDTFKVN 190
VENV+ L ++N
Sbjct: 252 VENVRELAIIRLN 262
BLAST of Bhi12G001439 vs. NCBI nr
Match:
TYK22561.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 121.7 bits (304), Expect = 6.9e-24
Identity = 76/187 (40.64%), Postives = 116/187 (62.03%), Query Frame = 0
Query: 1 MIDDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITN 60
M DDE++L++N R+L+I+NES LGEKILE K+VQKVLRSLP +F MK AIEETHDIT
Sbjct: 98 MSDDESVLDYNERILEITNESLLLGEKILESKIVQKVLRSLPGKFDMKVTAIEETHDITK 157
Query: 61 IKPDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKK 120
+K DELFGSL FEM++ + KK K + +S +E S + ++ ES L+ K+
Sbjct: 158 LKLDELFGSLLTFEMAISHRENKKGKDVAFKSIYEDE-SMGDQVDDETHMNESIALLTKQ 217
Query: 121 FSKALRRWDKHLLSRGNNVSSHV----KDISNITNNFDPKLSIVPTKRIEIKVSKGKILD 180
FSK ++++ K+L + G++ + KD N T F+ + + + K +G++
Sbjct: 218 FSKMVKKF-KNLNTTGSSAQNPTNYRRKDGENYTRRFNEVSNRRESDYSKKKEGEGRVFR 277
Query: 181 VENVKGL 184
+ +G+
Sbjct: 278 CKECRGI 282
BLAST of Bhi12G001439 vs. NCBI nr
Match:
KAA0025370.1 (putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 119.8 bits (299), Expect = 2.6e-23
Identity = 78/196 (39.80%), Postives = 122/196 (62.24%), Query Frame = 0
Query: 1 MIDDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITN 60
M DE++ E+N R+L+I+NES LGE I K++QKVL SLP++FYMK AIEE HDIT
Sbjct: 76 MSKDESVSEYNERVLEIANESLLLGETIPNSKIMQKVLLSLPRKFYMKVTAIEEAHDITT 135
Query: 61 IKPDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKK 120
+K D+LFGSL +F+M++ + KK K I +S+ E++ + + T+ N+ ES L+ K+
Sbjct: 136 LKLDKLFGSLLMFKMAIFDRENKKGKRITFKSTYEEEATVN-HSDTEANMDESKTLLTKQ 195
Query: 121 FSKALRRWDKHLLSRGNNVSS----HVKDISNITNNFDPKLSIVPTKRIEIKVSKGKILD 180
FSK +RR+ K++ + G N + K+ N T ++ + + + + K +G+ D
Sbjct: 196 FSKVVRRF-KNMNTIGLNAQTSNQYRRKNGENTTRRYNEESNRRGSDYGKKKEGEGRFSD 255
Query: 181 VENVKGLDTFKVNAQT 193
VENV+ L +NA T
Sbjct: 256 VENVRELAITSMNAFT 269
BLAST of Bhi12G001439 vs. NCBI nr
Match:
PNX73473.1 (gag-protease polyprotein, partial [Trifolium pratense])
HSP 1 Score: 119.8 bits (299), Expect = 2.6e-23
Identity = 75/156 (48.08%), Postives = 105/156 (67.31%), Query Frame = 0
Query: 1 MIDDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITN 60
M +DETILEFN RL DI+N SF L EK+ EEKLV+K+LRSLPKRF MK AIEE D++
Sbjct: 83 MDEDETILEFNARLRDIANTSFSLNEKMSEEKLVRKILRSLPKRFDMKVTAIEEAQDLST 142
Query: 61 IKPDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKK 120
+K DEL GSLQ FEM++ + +KK+K I +S E+ K D NL+E+ L+ KK
Sbjct: 143 MKVDELIGSLQTFEMAIGDRPEKKNKSIAF---VSEENHK------DNNLSEAIALIEKK 202
Query: 121 FSKALRR----WDKHLLSRGNNVSSHVKDISNITNN 153
F+K+L + W ++ + N +S +KD+S+ ++N
Sbjct: 203 FNKSLDKLQTEWRTNVPDKKFN-NSRIKDVSDKSSN 228
BLAST of Bhi12G001439 vs. ExPASy TrEMBL
Match:
A0A5D3DEG1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00030 PE=4 SV=1)
HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 81/191 (42.41%), Postives = 123/191 (64.40%), Query Frame = 0
Query: 3 DDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITNIK 62
+DET+ E+N R+L+I+NES LGEKI + K+V+KVLRSLP++F MK AIEE HDIT +K
Sbjct: 92 EDETVSEYNERVLEIANESLLLGEKIPDSKIVRKVLRSLPRKFDMKITAIEEAHDITKLK 151
Query: 63 PDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKKFS 122
DELFGSL FEM++ + KK KG+ +S +E++ +++ K +EN+ ES L+ K+FS
Sbjct: 152 LDELFGSLLTFEMTISHKENKKGKGVAFKSIYEDETTVNQSDK-EENVKESIDLLIKQFS 211
Query: 123 KALRRWDKHLLSRGNNVSSHV----KDISNITNNFDPKLSIVPTKRIEIKVSKGKILDVE 182
+ ++ K+L + G+N + + KD N T F+ + + K + + LDVE
Sbjct: 212 NVVEKF-KNLNTTGSNAQNLINYQRKDGKNNTRRFNENSNRRSSDYGRKKGANEEFLDVE 271
Query: 183 NVKGLDTFKVN 190
NV LD ++N
Sbjct: 272 NVMELDIIRLN 280
BLAST of Bhi12G001439 vs. ExPASy TrEMBL
Match:
A0A5D3DZH5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00610 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 79/193 (40.93%), Postives = 124/193 (64.25%), Query Frame = 0
Query: 1 MIDDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITN 60
M +DE++LE+N R+L+I+NES LGEK + K+V+KVLRSLP++F MK IEE +DIT
Sbjct: 72 MFEDESVLEYNERVLEIANESLLLGEKNSDSKIVRKVLRSLPRKFDMKATTIEEAYDITK 131
Query: 61 IKPDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKK 120
+K DELFGSL FEM++ + KK KGI +S +E++ +++ K +EN+ ES L+ K+
Sbjct: 132 LKLDELFGSLLTFEMAISHRENKKGKGIAFKSIYEDETTVNQSDK-EENMNESIDLLIKQ 191
Query: 121 FSKALRRWDKHLLSRGNNVSSHV----KDISNITNNFDPKLSIVPTKRIEIKVSKGKILD 180
FS ++++ K+L + G+N + + KD N F+ + + K +K + LD
Sbjct: 192 FSNVVKKF-KNLNTTGSNAQNLINYQRKDGENNKRRFNENSNRRNSDYRRKKRAKEEFLD 251
Query: 181 VENVKGLDTFKVN 190
VENV+ L ++N
Sbjct: 252 VENVRELAIIRLN 262
BLAST of Bhi12G001439 vs. ExPASy TrEMBL
Match:
A0A5D3DFT6 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold584G00160 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 3.3e-24
Identity = 76/187 (40.64%), Postives = 116/187 (62.03%), Query Frame = 0
Query: 1 MIDDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITN 60
M DDE++L++N R+L+I+NES LGEKILE K+VQKVLRSLP +F MK AIEETHDIT
Sbjct: 98 MSDDESVLDYNERILEITNESLLLGEKILESKIVQKVLRSLPGKFDMKVTAIEETHDITK 157
Query: 61 IKPDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKK 120
+K DELFGSL FEM++ + KK K + +S +E S + ++ ES L+ K+
Sbjct: 158 LKLDELFGSLLTFEMAISHRENKKGKDVAFKSIYEDE-SMGDQVDDETHMNESIALLTKQ 217
Query: 121 FSKALRRWDKHLLSRGNNVSSHV----KDISNITNNFDPKLSIVPTKRIEIKVSKGKILD 180
FSK ++++ K+L + G++ + KD N T F+ + + + K +G++
Sbjct: 218 FSKMVKKF-KNLNTTGSSAQNPTNYRRKDGENYTRRFNEVSNRRESDYSKKKEGEGRVFR 277
Query: 181 VENVKGL 184
+ +G+
Sbjct: 278 CKECRGI 282
BLAST of Bhi12G001439 vs. ExPASy TrEMBL
Match:
A0A2K3L4M7 (Gag-protease polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g029375 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 75/156 (48.08%), Postives = 105/156 (67.31%), Query Frame = 0
Query: 1 MIDDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITN 60
M +DETILEFN RL DI+N SF L EK+ EEKLV+K+LRSLPKRF MK AIEE D++
Sbjct: 83 MDEDETILEFNARLRDIANTSFSLNEKMSEEKLVRKILRSLPKRFDMKVTAIEEAQDLST 142
Query: 61 IKPDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKK 120
+K DEL GSLQ FEM++ + +KK+K I +S E+ K D NL+E+ L+ KK
Sbjct: 143 MKVDELIGSLQTFEMAIGDRPEKKNKSIAF---VSEENHK------DNNLSEAIALIEKK 202
Query: 121 FSKALRR----WDKHLLSRGNNVSSHVKDISNITNN 153
F+K+L + W ++ + N +S +KD+S+ ++N
Sbjct: 203 FNKSLDKLQTEWRTNVPDKKFN-NSRIKDVSDKSSN 228
BLAST of Bhi12G001439 vs. ExPASy TrEMBL
Match:
A0A5A7SGU2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00540 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 78/196 (39.80%), Postives = 122/196 (62.24%), Query Frame = 0
Query: 1 MIDDETILEFNLRLLDISNESFFLGEKILEEKLVQKVLRSLPKRFYMKDIAIEETHDITN 60
M DE++ E+N R+L+I+NES LGE I K++QKVL SLP++FYMK AIEE HDIT
Sbjct: 76 MSKDESVSEYNERVLEIANESLLLGETIPNSKIMQKVLLSLPRKFYMKVTAIEEAHDITT 135
Query: 61 IKPDELFGSLQIFEMSLEGQSKKKSKGIVLQSSMSNESSKSKNKKTDENLAESFFLMAKK 120
+K D+LFGSL +F+M++ + KK K I +S+ E++ + + T+ N+ ES L+ K+
Sbjct: 136 LKLDKLFGSLLMFKMAIFDRENKKGKRITFKSTYEEEATVN-HSDTEANMDESKTLLTKQ 195
Query: 121 FSKALRRWDKHLLSRGNNVSS----HVKDISNITNNFDPKLSIVPTKRIEIKVSKGKILD 180
FSK +RR+ K++ + G N + K+ N T ++ + + + + K +G+ D
Sbjct: 196 FSKVVRRF-KNMNTIGLNAQTSNQYRRKNGENTTRRYNEESNRRGSDYGKKKEGEGRFSD 255
Query: 181 VENVKGLDTFKVNAQT 193
VENV+ L +NA T
Sbjct: 256 VENVRELAITSMNAFT 269
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0032992.1 | 8.7e-27 | 42.41 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21974.1 gag-pol polyprotein [... | [more] |
| KAA0046523.1 | 2.1e-25 | 40.93 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK28735.1 gag-pol polyprotein [... | [more] |
| TYK22561.1 | 6.9e-24 | 40.64 | gag-proteinase polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0025370.1 | 2.6e-23 | 39.80 | putative mitochondrial protein [Cucumis melo var. makuwa] | [more] |
| PNX73473.1 | 2.6e-23 | 48.08 | gag-protease polyprotein, partial [Trifolium pratense] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DEG1 | 4.2e-27 | 42.41 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G... | [more] |
| A0A5D3DZH5 | 1.0e-25 | 40.93 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G... | [more] |
| A0A5D3DFT6 | 3.3e-24 | 40.64 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
| A0A2K3L4M7 | 1.3e-23 | 48.08 | Gag-protease polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g0293... | [more] |
| A0A5A7SGU2 | 1.3e-23 | 39.80 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
