Bhi12G001100 (gene) Wax gourd (B227) v1

Overview
NameBhi12G001100
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionZinc finger CCCH domain protein
Locationchr12: 38797295 .. 38800112 (-)
RNA-Seq ExpressionBhi12G001100
SyntenyBhi12G001100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTCTCATCTTTATTCGAATAAAACAGAGGCTGCGGCAATTCGTAGAGGTTGTTTATCAAATCCAAGAAATTGATATACAGTAAACAGAATGGGGGCAGAAGGAGCAACGGAACAAGAGAAGTGCGCATCTCATAATCCAAGGACGGTTCCGATCACGGAAGCTCAGTTCCTATCCTGGAAGCGGCAGAAGGTACTTCCCTTCTTCTTCATCAATCTCTCTTAGGTTTCGATTAGGGTTTCTTTTGATCGCTGCTCTTTGATGTGCCATTGCTTTGCTTGAGTTCTTTAAGGTGCCAATTAATTGTATTTCCGTGCCATAGCCTGTAAAATTAGAGAATTTAGGGTTTCGTGGAACGACTTTTGGGGATTTGAAAACCTCTAGGATTCATTCAATTTAGAGAGGTACCTAGGAATTGTTTTCTCTGTTGTTTGTAGAAAGGGTCTCAATTTTTCTCAATTTTGCTTACACCCAATTCGGCTTAAGTTTTGGAAAAGCTTTTTTATTATTTATTTATTTATTTATTTTATTTTTTGGAGAATAAACAACTTAACGGGCAACAAACCTGAACGTACGAGATTACATCACTAAGACACGAACAACTTAAGAACCTAATTTTCCGCTCGGAGTTTGAAGAATGAAAAAGGAGTTTGTAGAATGGAAGATTCTTGCTCCTCAAAAGCTTTATGGGCACTAGAGCGACATTGCATTTTGGTTGCTGCAAACATGAGAAAACGAGACAATTCTCATTTCACTATCTAGAGCCTTTGCCTCATCAATAAAGAAAGGGACTTCATAAATGTCGACCGCTTCATCATTCAACAACTTAAGGACCTCCAGACTATCAGATTCAATTAGAATATTCGATGGATTAATTGAGGAAAAGGAATTGGGTAATGAGAAAGGAAAGGTTTGTCTGTATAAATATAAAATTACTCAGATAGTCCTAGAGTCCTGGCCTTCTATGAGGGACTAGGATTATTTTGTTTTGTTTCCTAAATAAGAAACCAGCTTTATGGCCTACAAAAAAAGTTGCTTCTATAAAAAGGAGCAAAGTAGAAAAGAAGAAAGAAAATAATAATAATAATAATAAAACAAGATTACTAGAGATTGCTTCAACTATTAAGAATAAAAAATAGGATAGTTACAGAGTACCAGAATACCTAGAAGGACATTGAAATTTGCTGCATTCAAAATCTCTTCCCAAGATTCTTTTTAAACGCTGAAAGGTTCTCTTGTTTCTCTCTAGCCATAGATTTCACAATGTAATGAAGAATCTTGCCTGCCAGTGCCAAATAATAAATCTTTTTTACTAAAGGAGGAATTTACCAATACCACCTCCATGGCCCTTCAACCTCTGGGAGGCACATTGGCTCCAAACATATTCAAGAATTTGCTCCATAGTGTCAATGTAAAGTGGCAACTTCAAATCACATGAATGAGAGCCTCTGTAGATCCCTTTCACACATCACATGCCATGATGCAACTCACCACTGTCATCGGGACATAAAACCATGGATGAAGATCTTTGAATGAAGTTAGAGTGTTTAACCTTCCCAAAGAAACCAATGAAGCAAAGAACTTAATCTTCTCTGGATTTTTCCAGATCAGGGAGAAGAAAGAGGAGACAGGAGGAGGATTGGATTCAGACACTAAATGGGCAAGAAGAGACTTCCTAGAGAACGCTCCTGAAGGCTCAAGAATCCATTTGAAGTTCGGGATAGGCAAACCCCTTGTCGAAACAAAAAGGAGATTAGCCAAATCTTCAGATTCATGATCATTAAAGGATCTTCTTAAATGAAAAATCATAATCTTTATGGAGGGTAGAAGTAGAATGTAGACGAACTATAATTGAGAGGATTAAAACAGAATTGACAAGCACTTCATTTCCAAGGATAAAGAAGTGGGGAAGAACAACTTGGGAAGAATTATTTCCGATCGTGAAGTCCTCCGGGAAACAAATACGAGTCCCATTTTCCATGGAAATTTTGATGAAATTGTTAAAGAAGGGGATTAGTGAAAATACCTGCAATACGTAAGTAGCTATCTTTAAATTTGGTGGCTATTAATGTTCTAAATCACATGTTTCAACAATTGATTGTCAGTGACGTGAACTACAGGCTCGGTTTTGTTGGAGTTAACTGACCACTGGAAGGAACCTAAACCGTTCCACCTGTCTTTTATGAGACGATTTGTGTGTCAGTGAAGTAACTGAGTTGTTGATGTTTGACATCTATCACCAGCCACCTCCTCTTATTTGCAGGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAGCGTGCAGAAGATATAGCCTCGGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCCTGCACCAACCATGGGTTTTTGACAATACTCAATATTGAGGTTGGTGGTTTAAGATGGAAATATTGTGGTGCTAGTTTTTGTGGTCTCTTGAGAAATTGGCTTTATACTTTAAAATGCTACCTTGTATTGTATTAGATATTCATCATTCATACGAGTTAGTAGTTCTTCCGCTCAAAAAAATTCCTCTCTTTGGTTATGGTAGCCATATATGAATCTGTTTAGGTTTCATCGCATGGTAAAAGTTGTACAATTGGACCAATTGGTTCTAGAAAATGATGCATCCAATTTACGCTGATTTGCCCTATGCTGTTGGGCTAAAATGACTTCATAATATGCATTTGTCTTCTCCAGTCTACAAATCATGCGTAAATAAATGTTATGTTTCCTTTCTAAATAGGTCCTACATGATGAAAGATTTCATTAGGGCATCAAAATCATGTAGTGTCCATGGTTTTGG

mRNA sequence

GTTTTCTCATCTTTATTCGAATAAAACAGAGGCTGCGGCAATTCGTAGAGGTTGTTTATCAAATCCAAGAAATTGATATACAGTAAACAGAATGGGGGCAGAAGGAGCAACGGAACAAGAGAAGTGCGCATCTCATAATCCAAGGACGGTTCCGATCACGGAAGCTCAGTTCCTATCCTGGAAGCGGCAGAAGGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAGCGTGCAGAAGATATAGCCTCGGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCCTGCACCAACCATGGGTTTTTGACAATACTCAATATTGAGGTTGGTGGTTTAAGATGGAAATATTGTGGTGCTAGTTTTTGTGGTCTCTTGAGAAATTGGCTTTATACTTTAAAATGCTACCTTGTATTGTATTAGATATTCATCATTCATACGAGTTAGTAGTTCTTCCGCTCAAAAAAATTCCTCTCTTTGGTTATGGTAGCCATATATGAATCTGTTTAGGTTTCATCGCATGGTAAAAGTTGTACAATTGGACCAATTGGTTCTAGAAAATGATGCATCCAATTTACGCTGATTTGCCCTATGCTGTTGGGCTAAAATGACTTCATAATATGCATTTGTCTTCTCCAGTCTACAAATCATGCGTAAATAAATGTTATGTTTCCTTTCTAAATAGGTCCTACATGATGAAAGATTTCATTAGGGCATCAAAATCATGTAGTGTCCATGGTTTTGG

Coding sequence (CDS)

ATGGGGGCAGAAGGAGCAACGGAACAAGAGAAGTGCGCATCTCATAATCCAAGGACGGTTCCGATCACGGAAGCTCAGTTCCTATCCTGGAAGCGGCAGAAGGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCAAGGAAGCGTGCAGAAGATATAGCCTCGGGAGCGGTGCAAATGAATGGGCGAGAGCTTTTCCTGCACCAACCATGGGTTTTTGACAATACTCAATATTGA

Protein sequence

MGAEGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNTQY
Homology
BLAST of Bhi12G001100 vs. TAIR 10
Match: AT1G22140.1 (unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-18
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0

Query: 17 PRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQMNGRELFLHQPWVFDNT 76
          P  + I++ QFL+WKRQKDAE  AK+ E ARKR EDIASG V MNGRELFLH+PWVFD+T
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELFLHEPWVFDDT 70

Query: 77 QY 79
           +
Sbjct: 71 HH 72

BLAST of Bhi12G001100 vs. TAIR 10
Match: AT1G22140.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 4.3e-07
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 17 PRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASG 57
          P  + I++ QFL+WKRQKDAE  AK+ E ARKR EDIASG
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASG 50

BLAST of Bhi12G001100 vs. NCBI nr
Match: XP_038906768.1 (zinc finger CCCH domain-containing protein 15 homolog [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 9.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MGAEGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQM 60
          MGAEGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQM
Sbjct: 1  MGAEGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQM 60

Query: 61 NGRELFLHQPWVFDNTQY 79
          NGRELFLHQPWVFDNTQY
Sbjct: 61 NGRELFLHQPWVFDNTQY 78

BLAST of Bhi12G001100 vs. NCBI nr
Match: XP_022141384.1 (zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1  MGAE---GATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGA 60
          MGAE    A E+EK  SHNPRT PITEAQFLSWKRQKDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 79
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

BLAST of Bhi12G001100 vs. NCBI nr
Match: XP_022939418.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_023549915.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6579014.1 hypothetical protein SDJN03_23462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MGA-EGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQ 60
          MGA E A EQEK AS NPRT+PITE QFLSWKRQKDAEASAKRDETARKRA+DIASGAVQ
Sbjct: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 79
          MNGRELFLHQPWVFDN+QY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

BLAST of Bhi12G001100 vs. NCBI nr
Match: XP_022992866.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima])

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-29
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0

Query: 4  EGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQMNGR 63
          E A EQEK AS NPRT+PITE QFLSWKRQKDAEASAKRDETARKRA+DIASGAVQMNGR
Sbjct: 5  EAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQMNGR 64

Query: 64 ELFLHQPWVFDNTQY 79
          ELFLHQPWVFDN+QY
Sbjct: 65 ELFLHQPWVFDNSQY 79

BLAST of Bhi12G001100 vs. NCBI nr
Match: XP_022990599.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023545022.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6602051.1 hypothetical protein SDJN03_07284, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032745.1 hypothetical protein SDJN02_06795 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 70/79 (88.61%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 1  MGA-EGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQ 60
          MGA E A EQEK ASH+P   PITEAQFLSWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 79
          MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79

BLAST of Bhi12G001100 vs. ExPASy TrEMBL
Match: A0A6J1CIH3 (zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=3673 GN=LOC111011797 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.2e-30
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0

Query: 1  MGAE---GATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGA 60
          MGAE    A E+EK  SHNPRT PITEAQFLSWKRQKDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 79
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

BLAST of Bhi12G001100 vs. ExPASy TrEMBL
Match: A0A6J1FLL2 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445336 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.2e-30
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0

Query: 1  MGA-EGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQ 60
          MGA E A EQEK AS NPRT+PITE QFLSWKRQKDAEASAKRDETARKRA+DIASGAVQ
Sbjct: 1  MGAEEAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 79
          MNGRELFLHQPWVFDN+QY
Sbjct: 61 MNGRELFLHQPWVFDNSQY 79

BLAST of Bhi12G001100 vs. ExPASy TrEMBL
Match: A0A6J1JUQ1 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=3661 GN=LOC111489071 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.8e-29
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0

Query: 4  EGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQMNGR 63
          E A EQEK AS NPRT+PITE QFLSWKRQKDAEASAKRDETARKRA+DIASGAVQMNGR
Sbjct: 5  EAAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGAVQMNGR 64

Query: 64 ELFLHQPWVFDNTQY 79
          ELFLHQPWVFDN+QY
Sbjct: 65 ELFLHQPWVFDNSQY 79

BLAST of Bhi12G001100 vs. ExPASy TrEMBL
Match: A0A6J1JSG7 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=3661 GN=LOC111487435 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.3e-29
Identity = 70/79 (88.61%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 1  MGA-EGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQ 60
          MGA E A EQEK ASH+P   PITEAQFLSWKR KDAEASAKRDETARKRAEDIASGAVQ
Sbjct: 1  MGAEEAAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGAVQ 60

Query: 61 MNGRELFLHQPWVFDNTQY 79
          MNGRELFLHQPWVFDNTQY
Sbjct: 61 MNGRELFLHQPWVFDNTQY 79

BLAST of Bhi12G001100 vs. ExPASy TrEMBL
Match: A0A1S3CCP9 (zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499290 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.9e-29
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0

Query: 4  EGATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGAVQMNGR 63
          E A EQEK + +NPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIA GAVQMNGR
Sbjct: 5  EAAMEQEKLSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGAVQMNGR 64

Query: 64 ELFLHQPWVFDNTQY 79
          ELFLHQPWVFDN+QY
Sbjct: 65 ELFLHQPWVFDNSQY 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G22140.11.9e-1867.74unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bac... [more]
AT1G22140.24.3e-0765.00unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038906768.19.2e-36100.00zinc finger CCCH domain-containing protein 15 homolog [Benincasa hispida][more]
XP_022141384.11.7e-2987.65zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia][more]
XP_022939418.11.7e-2988.61zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_0... [more]
XP_022992866.13.8e-2989.33zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima][more]
XP_022990599.11.1e-2888.61zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023... [more]
Match NameE-valueIdentityDescription
A0A6J1CIH38.2e-3087.65zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=... [more]
A0A6J1FLL28.2e-3088.61zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3... [more]
A0A6J1JUQ11.8e-2989.33zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=366... [more]
A0A6J1JSG75.3e-2988.61zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=366... [more]
A0A1S3CCP96.9e-2989.33zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032378ZC3H15/TMA46 family, C-terminalPFAMPF16543DFRP_Ccoord: 18..74
e-value: 4.5E-8
score: 33.5
NoneNo IPR availableGENE3D6.20.400.10coord: 4..70
e-value: 4.2E-6
score: 28.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR12681:SF10OS03G0385301 PROTEINcoord: 1..78
NoneNo IPR availablePANTHERPTHR12681ZINC FINGER-CONTAINING PROTEIN P48ZNFcoord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001100Bhi12M001100mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
cellular_component GO:0005829 cytosol